View Redoxidase 10095

Entry information : RgraGPx01

Entry ID	10095
Creation	2012-01-05 (Passaia GisÃ¨le)
Last sequence changes	2012-01-05 (Passaia GisÃ¨le)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2013-08-20 (Catherine Mathe (Scipio))

Peroxidase information: RgraGPx01

Name

RgraGPx01

Class

Fungi-Bacteria glutathione peroxidase [Orthogroup: Gpx3004]

Taxonomy

Eukaryota Fungi Basidiomycota Rhodotorula

Organism

Rhodotorula graminis [TaxId: 29898 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	RgraGPx01 start..stop	S start..stop
SrosGPx01	238	1.5e-81	1..157	31..193
CputGPx01	188	4.92e-61	1..158	105..269
AbauGPx	184	9.65e-61	5..157	2..161
TcamGPx	182	3.55e-60	5..155	2..159

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1214923..1214991	67	N° 2	1215136..1215179	42	N° 3	1215421..1215440	18	N° 4	1215515..1215582	66
N° 5	1215643..1215831	187	N° 6	1215905..1215988	82
join(1214923..1214991,1215136..1215179,1215421..1215440,1215515..1215582,1215643 ..1215831,1215905..1215988)

Literature and cross-references RgraGPx01

DNA ref.	JGI genome: scaffold_4 (1214923..1215988)

Protein sequence: RgraGPx01

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	157
PWM (Da):	17503.02
PI (pH):	8.42

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MSSAASFYELEAEKPKGDKIKFEDYKGKAVLIVNTATKFTGLEELYQKYKDQGLVVLGFPSDQFGHQNPEDDEGTESFCQRNHGVSFPLLKKSDVNGPATNPVFQFLKPRAKGLLGERIN
WNFSKFLISKNGEVLHRYAPTTKPDAIAKDIEKALAA*

Retrieve as FASTA

Remarks

Complete sequence from genomic (5 introns) No EST. Strain="WP1"

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGTCGTCCGCCGCCTCCTTCTACGAGCTCGAGGCTGAGAAGCCCAAGGGCGACAAGATCAAGTTCGAGAGGTGAGTCGCACGGTTGCTCCTCGGCGGGAGAAGTGCTGGACCCGAGCAA
GGGGAGCCGCCGCGAGGAGACGAGGATGGCGGCTCCCTCTTCTTCGTCGGTCGAGCCGCGATGTGCAAGTACTGACTCGCTCTCGCGACCTGCAGGACTACAAGGGCAAGGCCGTCTTGA
TCGTCAACACCGCCACCAAAAGTGAGCCTTCTGATCCACCTCCTCTTCCGCCTCGTCGCTTCCTCCCGTCCGTCTTCCTTCCCTCGCGGTCCCTGACACCTTATATTCTACGACAATCGA
TGCGGCTTCACATTTCATTGAGTATTTAGTCTCTCCGTCGTCCGACGAGCCGGTAGGAGCGCGAGCGCTTCTCGGCCGTCGTGCGACCTCTTTCCAGCCTCGTCGACAGCTACTGATACC
CGCCTTCTTCCTTCCCGCGCAGGTTCACCGGGCTCGAGGAGCGCGTGAGTCTCACCGTCACTGTGCCTGACTGGGTCGCGATTTGACCTCGTCCCCCTCCTTCCCCTCGTCCCTGCAGTC
TACCAGAAGTACAAGGACCAGGGTCTCGTCGTCCTCGGCTTCCCCTCGGACCAGTTCGGCCACCAGAGGTGCGCTCCCCTCTCCCTGACTCTCGTCGACGTCGTGCCTGACGTGCCCTCG
TCGCGCAGAACCCCGAGGACGACGAGGGCACCGAGAGCTTCTGCCAGCGCAACCACGGCGTGTCCTTCCCGCTCCTCAAGAAGTCGGACGTGAACGGGCCGGCGACCAACCCCGTCTTCC
AGTTTCTCAAGCCTCGCGCCAAGGGTCTCCTCGGTGAGCGTATCAACTGGAACTTTTCAAAGTTTCTCATCTCAAAGAGGTACGCCGGCCCTCCTCTCGTCGTTCCCGACCAGACACTCC
TCAGGCGGTTCTTGACGAGCTCCCGCCCGCAGAACGGCGAGGTCCTCCACCGCTACGCGCCAACGACCAAGCCCGACGCCATCGCGAAGGACATCGAGAAAGCGCTCGCCGCCTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGTCGTCCGCCGCCTCCTTCTACGAGCTCGAGGCTGAGAAGCCCAAGGGCGACAAGATCAAGTTCGAGGACTACAAGGGCAAGGCCGTCTTGATCGTCAACACCGCCACCAAGTTCACC
GGGCTCGAGGAGCTCTACCAGAAGTACAAGGACCAGGGTCTCGTCGTCCTCGGCTTCCCCTCGGACCAGTTCGGCCACCAGAACCCCGAGGACGACGAGGGCACCGAGAGCTTCTGCCAG
CGCAACCACGGCGTGTCCTTCCCGCTCCTCAAGAAGTCGGACGTGAACGGGCCGGCGACCAACCCCGTCTTCCAGTTTCTCAAGCCTCGCGCCAAGGGTCTCCTCGGTGAGCGTATCAAC
TGGAACTTTTCAAAGTTTCTCATCTCAAAGAACGGCGAGGTCCTCCACCGCTACGCGCCAACGACCAAGCCCGACGCCATCGCGAAGGACATCGAGAAAGCGCTCGCCGCCTGA

Retrieve as FASTA