Phylogenetic Study
Launch Pipeline
Start by selecting the sequences of interest from a Multicriteria search.
The selected sequences will be aligned with MAFFT in order to generate the phylogenetic tree with PhyML
.
In parallel, the detection of introns will be done thanks to CIWOG followed by
GECA that will generate the gene structures.
Finally, these results will be combined together and visualized with Archaeopteryx
.
Limitations
This pipeline is limitted to a 100 sequences.
This Pipeline runs PhyML and
GECA in order to generate a phylogenetic
tree with gene structure information that will be visualized by Archaeopteryx
.
Launch Pipeline
Start by selecting the sequences of interest from a Multicriteria search.
The selected sequences will be aligned with MAFFT in order to generate the phylogenetic tree with PhyML
![External Link External Link](/assets/images/ExternLk.png)
Finally, these results will be combined together and visualized with Archaeopteryx
![External Link External Link](/assets/images/ExternLk.png)
Limitations
This pipeline is limitted to a 100 sequences.
Input Sequences are extracted from the Redoxibase from a Mutricriteria search |
![](/assets/images/images_geca/down_arrow_double_perox2.png)
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![](/assets/images/images_geca/double_down_arrow_perox3.png)
Visualization Archaeopteryx ![]() Mode: Applet. Output: XML. |