View Redoxidase 10225

Entry information : BaDyPrx04

Entry ID	10225
Creation	2012-01-31 (Christophe Dunand)
Last sequence changes	2012-01-31 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2012-03-01 (Catherine Mathe)

Peroxidase information: BaDyPrx04

Name

BaDyPrx04

Class

DyP-type peroxidase D [Orthogroup: DyPrxD001]

Taxonomy

Eukaryota Fungi Basidiomycota Agaricomycetes Meruliaceae Bjerkandera

Organism

Bjerkandera adusta [TaxId: 5331 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	BaDyPrx04 start..stop	S start..stop
BaDyPrx06	803	0	2..480	21..499
BaDyPrx01	707	0	1..480	20..498
BaDyPrx02	691	0	3..478	19..494
BaDyPrx03	666	0	1..478	20..497

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '10225' 'complement(join(105128..105320,105377..105443,105499..106071,106124..106238,106288..106621,106677..106779,106845..106885,106943..106956))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	106943..106956	12	N° 2	106845..106885	39	N° 3	106677..106779	101	N° 4	106288..106621	332
N° 5	106124..106238	113	N° 6	105499..106071	571	N° 7	105377..105443	65	N° 8	105128..105320	191
complement(join(105128..105320,105377..105443,105499..106071,106124..106238,1062 88..106621,106677..106779,106845..106885,106943..106956))

Literature and cross-references BaDyPrx04

DNA ref.	JGI genome: scaffold_20 (106956..105128)
Cluster/Prediction ref.	JGI gene: 184870

Protein sequence: BaDyPrx04

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	479 (329)
PWM (Da):	51431.19 (34485.0)
PI (pH):	6.75 (5.30)	Peptide Signal:	cut: 28 range:28-356

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MSVASATQKLSRTAPLLGAFPGQAALPTLSQFLGIKSKDDTFLPLENIQCDILVGMKKQKERFIFFHINDAAQFKAALKAFVPASITSTATLIAPAVQQPLAFVNIAFSCTGLRALGIND
NLADAQFASGMFSDAKNLGDDIGQWQAPFTGTEIHGVFLIGTDQEEFLDQSSGDISSCFGASIAQLKVMSGSARPGDQAGHEHFGYLDGISQPAVTGWAVNVLPGQAVVPTGVIITGRLG
DSHSRPAWAIDGSFMAFRHLQQKVPEFNAYTHAHAIRANGGGLLTKEQGAEYLGARMIGRWKSGAPLDLSPLHDNPALGADPTRNNLFNYASALVEESKCPFSAHIRKSNPRLDLPVLEV
INHAVRSSIPYGPETSSAELESGVSSHDRGLLFVEYQSVIDKGFRFQQRIWCNDPLFPPGKPNIPGLDPIIGQGHPRTTRGLDPLAPHKTYTLPDFVVPKGGEYFFMPSISALTSTIAE*

Retrieve as FASTA

Remarks

Complete sequence from genomic (7 introns). Very short first exon confirmed with ESTs

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGAGCGTTGCATCGTTCGTCACGTCTGTCTTTGCCTTTGTATACATCTAAACCTATGTTCCTGCTCCTAGTGTGCTACCCAAAAGCTATCGCGCACTGCGCCCCTCCTCGGCGGTATGT
CATACGTTTGGTCCAGTCGGTCGTTTGTGCAGTTGCAACTCTGATCCTGTATCGTGCAGCGCGTTCCCTGGGCAGGCCGCGTTGCCCACCCTATCGCAATTTCTGGGCATTAAGTCCAAG
GACGACACCTTTCTGCCGCTGGAGAATATTCAATGCGATATTCTGTATGTCCTATCTTTCTTACGCGGTTGCATGGGGCTAACTTTGGCGGCCGCCAAGGGGGTCGGGATGAAGAAACAG
AAGGAACGCTTCATCTTCTTCCATATCAACGACGCGGCCCAGTTCAAAGCTGCACTGAAGGCCTTCGTCCCAGCAAGCATCACATCTACGGCAACGCTGATTGCTCCTGCCGTACAGCAA
CCACTCGCCTTCGTGAACATTGCGTTCTCGTGCACGGGGCTTCGCGCTCTCGGTATCAACGACAACCTTGCTGACGCGCAGTTCGCCTCCGGGATGTTTTCAGATGCTAAGAACCTCGGG
GATGACATCGGTCAGTGGCAAGCACCGTTCACTGGCACAGAGATACACGGCGTCTTCTTGATTGGAACCGACCAAGTAAGTACCGCGGGACTTAGTAATGAGAATTGAACTCACCGTTGG
GTAGGAGAAGAGTTTCTGGATCAGTCTTCAGGTGATATCAGCTCGTGTTTCGGAGCCTCTATCGCCCAATTGAAGGTTATGAGTGGGTCTGCACGGCCTGGAGACCAGGCAGGACATGAA
CGTTAGTCGTCATTAATCGTCTCCGACGTGCTGGTATCTAACATTGCGGGCAGACACTTCGGCTACCTCGATGGCATATCTCAGCCAGCGGTTACGGGCTGGGCGGTGAACGTCCTTCCA
GGTCAAGCAGTCGTACCGACGGGTGTCATCATCACAGGCCGTCTTGGTGACTCTCACTCCCGCCCAGCATGGGCCATCGACGGGAGTTTCATGGCCTTCCGACACTTGCAGCAGAAGGTG
CCCGAGTTCAACGCCTACACGCACGCGCACGCAATTCGGGCGAACGGTGGAGGACTCCTCACGAAGGAGCAAGGTGCAGAGTACCTCGGTGCCCGTATGATTGGCCGCTGGAAGAGCGGT
GCCCCACTGGACCTTTCACCCCTCCACGACAACCCAGCTCTTGGCGCGGACCCCACGAGGAACAACCTCTTCAACTACGCGAGCGCGTTGGTGGAAGAATCGAAGTGCCCTTTCAGCGCG
CATATCAGGAAATCCAACCCACGCCTGGACTTGCCTGTCCTGGAGGTCATCAACCACGCCGTGAGGTCCAGCATTCCTTACGGCCCAGAAACGTCCAGCGCGGAGCTTGAGTCAGGAGTG
AGCTCCCATGATCGCGGCCTCCTATTCGGTATGTTTATGATTCAGCGAACACGCCAATATTGTTGGTTAAATGTCTGCTTCAGTTTTGAGTACCAGTCCGTCATCGACAAGGGGTTCCGG
TTCCAACAGAGGATCTGGTGCAACGATCCACTGTCAGTCCCTTCTTACTGTATTGCACCCCTCCTTGCCGCTGATGATACGCCTGTAGGTGTTCCCTCCCGGTAAGCCGAACATCCCCGG
TCTCGACCCTATTATCGGTCAAGGACATCCGCGCACCACGCGTGGTCTCGATCCCTTGGCCCCGCACAAGACGTACACACTCCCGGATTTCGTGGTCCCGAAGGGTGGCGAATACTTCTT
CATGCCGTCTATTTCTGCGCTCACTTCCACTATCGCCGAGTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGAGCGTTGCATCTGCTACCCAAAAGCTATCGCGCACTGCGCCCCTCCTCGGCGCGTTCCCTGGGCAGGCCGCGTTGCCCACCCTATCGCAATTTCTGGGCATTAAGTCCAAGGACGAC
ACCTTTCTGCCGCTGGAGAATATTCAATGCGATATTCTGGTCGGGATGAAGAAACAGAAGGAACGCTTCATCTTCTTCCATATCAACGACGCGGCCCAGTTCAAAGCTGCACTGAAGGCC
TTCGTCCCAGCAAGCATCACATCTACGGCAACGCTGATTGCTCCTGCCGTACAGCAACCACTCGCCTTCGTGAACATTGCGTTCTCGTGCACGGGGCTTCGCGCTCTCGGTATCAACGAC
AACCTTGCTGACGCGCAGTTCGCCTCCGGGATGTTTTCAGATGCTAAGAACCTCGGGGATGACATCGGTCAGTGGCAAGCACCGTTCACTGGCACAGAGATACACGGCGTCTTCTTGATT
GGAACCGACCAAGAAGAGTTTCTGGATCAGTCTTCAGGTGATATCAGCTCGTGTTTCGGAGCCTCTATCGCCCAATTGAAGGTTATGAGTGGGTCTGCACGGCCTGGAGACCAGGCAGGA
CATGAACACTTCGGCTACCTCGATGGCATATCTCAGCCAGCGGTTACGGGCTGGGCGGTGAACGTCCTTCCAGGTCAAGCAGTCGTACCGACGGGTGTCATCATCACAGGCCGTCTTGGT
GACTCTCACTCCCGCCCAGCATGGGCCATCGACGGGAGTTTCATGGCCTTCCGACACTTGCAGCAGAAGGTGCCCGAGTTCAACGCCTACACGCACGCGCACGCAATTCGGGCGAACGGT
GGAGGACTCCTCACGAAGGAGCAAGGTGCAGAGTACCTCGGTGCCCGTATGATTGGCCGCTGGAAGAGCGGTGCCCCACTGGACCTTTCACCCCTCCACGACAACCCAGCTCTTGGCGCG
GACCCCACGAGGAACAACCTCTTCAACTACGCGAGCGCGTTGGTGGAAGAATCGAAGTGCCCTTTCAGCGCGCATATCAGGAAATCCAACCCACGCCTGGACTTGCCTGTCCTGGAGGTC
ATCAACCACGCCGTGAGGTCCAGCATTCCTTACGGCCCAGAAACGTCCAGCGCGGAGCTTGAGTCAGGAGTGAGCTCCCATGATCGCGGCCTCCTATTCGTTGAGTACCAGTCCGTCATC
GACAAGGGGTTCCGGTTCCAACAGAGGATCTGGTGCAACGATCCACTGTTCCCTCCCGGTAAGCCGAACATCCCCGGTCTCGACCCTATTATCGGTCAAGGACATCCGCGCACCACGCGT
GGTCTCGATCCCTTGGCCCCGCACAAGACGTACACACTCCCGGATTTCGTGGTCCCGAAGGGTGGCGAATACTTCTTCATGCCGTCTATTTCTGCGCTCACTTCCACTATCGCCGAGTGA

Retrieve as FASTA