Sequence Properties
first value : protein
second value (mature protein) |
Length (aa):  |
324 (301) |
| PWM (Da): |
34587.13 (32149.0) |
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| PI (pH): |
4.92 (5.03) |
Peptide Signal: |
cut: 24 range:24-324 |
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Sequence
Send to BLAST
Send to Peroxiscan
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| *.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MDLELSRVLA LLAYCCLMGT GNAQLRFGFY GQTCPSAEPI VRSVVRNAVI SNPTMAAVLL RLHFHDCxxx GCDGSILIEN GRSAERNAFG HQGVGGFEVI EEAKKHLEVT CPGVVSCADI
VALAARDAVA MANGPDYEVP TGRRDGRVSN VSLAEDMPDV GNSIQQLKSK FFQKGLxEKD LVLLSAAHTI GTTACFFMTD RLYNFMPGGG SDPSINPDFL PELKSMCPQN GDVNVRMPID
HGSEQTFDDQ ILRNIRSGWA VLESDAKLND DPVTRSVIES YxGLFNPIFG PSFEADFVES MVKMGQIGVK TRVKWRDQAG LQIF
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Retrieve as FASTA
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| Remarks |
Complete sequence from NGS. GEIR is missing but present in another frame |
DNA ►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGATCTAG AGCTCTCACG GGTTCTTGCA CTRCTCGCTT ATTGTTGCTT GATGGGAACG GGTAATGCGC AGCTCAGATT CGGTTTCTAC GGCCAAACCT GCCCTTCTGC CGAGCCCATC
GTGAGATCCG TCGTTCGAAA TGCGGTCATC TCCAACCCCA CCATGGCCGC CGTCTTGCTT CGCCTTCACT TCCATGACTG CTTnnnnnnn nnnnCTCTCT CGCTCAATAT GCTCTGCTTT
CCTCATATCA TGACTAGTAA TGCTTCAAAA GTTGAAAGAT TCTTGATAGA TAAATGCTCT TGAATAAGAC CCTTTTATCT AGGAATGAGA CTGTTAAGGT CGATCTTGTG ATTTTGATGC
TATGTATCTT TTAGGGATGT GATGGTTCAA TTCTTATAGA GAACGGGCGA AGTGCGGAGA GGAATGCGTT CGGGCACCAA GGGGTGGGCG GATTTGAGGT GATCGAGGAA GCCAAGAAGC
ACCTCGAGGT CACTTGCCCC GGTGTCGTCT CGTGCGCCGA CATTGTTGCC TTAGCGGCTA GAGATGCTGT CGCAATGGTT CGCCTCTCTT TTATTTGTGT TCTCTTGATT TGCACATATA
TATTAGTTGT CTGTTTAGGA TGATCATATA TGGATGTACC ATGAGTCAAT TATCTAGCAT GCCTAGGATG GATTTTTCGT GTACTCGTGA ATCAGTATCA TGATTGAATA TGAATTCCGA
ATAGAATGAT GCGYGAAATT AGTACAATGG CCGGATAATT GTTACAAACT GAATTTATGA AGTGACATGA CAAATTGACA ACACACTTAT ATTAATGTGT GTGAAGGCAA ATGGGCCTGA
TTATGAGGTT CCGACGGGGC GCCGGGATGG GAGGGTGTCA AATGTGTCGC TGGCCGAGGA CATGCCGGAC GTCGGCAACT CCATCCAACA GCTCAAGTCC AAGTTCTTCC AGAAAGGCCT
CWCCGAAAAG GACCTCGTCC TCCTAAGCGG TACAGCCCCT CTCTCTCTCT CTACCnnnnn nnnnnnnnnn nTACCCATGC TGATATGATG AGCTGATGTT GGTTTGGAAG CCTAAAAAAC
ATGAAAAAGG TGTCATCAAT CGTCATGTTG GAGCATCAAA ATTAGAATTT CGTTTGGCTG GTTTTAGGTG GGTAAGAAAC AGATTATTCT ACTCACATTC TCAACTRCAT ACAATGACAC
ATCCTTCAAC GATGACTCTT TGTAATTAGG CTTGTAATCC AATTTCACAA TTCTTAAAAT CGTCCAAGAC TACAAGGATT GGGAAAAATT ACGAAAAATG TTAGGAATAT RTTGTACAAA
TACCAAATCA ATCATAAACT TTTCAATTTG GTCAATTTAA TCRTAAACCT TTTAAGCATA TGTCAATATT CCATCCAAAT TTGGCTAGAT CTTATTGATA TAGACGCCAA AGGTCCTACG
TGACACAGTT GACGCTAACA TGTACAATTA TTTTGCATTT TTAATTTTTT TTCTTTTTTT TTTCTTTTCT TTTCTTTTTG TTTCTTTCTC TTTCTTACGG CCTCGnnnnn nnnnnnnnnn
nnAATCCAAA ACACTGCAAA AATCATCTAT GTTAGTGCCA GTTGTGGCAT ATAAGGCAAA TGTCATTTAT RTTAGTAATT TCCAACCAAA ATTGGCCGGA ATGACTAAAT TAACAAATTG
TCCAAAGGTT TATTACTATG TTGACTAAAT TGAAAAGTTT AAGACTAGAT TGACATCCAC ATATTTTTTG GTAATTATCT TATAGTAAAT TAATATTAGA GATGAGCGGT TTTAAGCTCC
ATACAAGTTC CACTTGAAAC CTAGAATTTG GAACATATCC ATTTAAATAG ATTTCTCATT TTCTAGAACT TAAAATCTAT CATGGGGACT TTGGAACCTA GAACCCATCT TATCAYAGAT
TCTAAAGTTA GTTCCAAGAT CTACATAAGT TTCACCTTTA TTATTAATAG GATAATTGCA ATAAATTATC ACTTTTAATA ATCGTCAATT GTTGCCACAA TCTATCAATC ATAATTTATA
TTTGGATACA CGAAAAATAT GAAATATTAT AAAGTAAATG TTTTAATCAT AAAATAGAAG CTCAGACTAG TGATCCCAGA TTATACATTC ATAATCAAAT GCCATAGAAT ACTACAAGAT
CGTGCAAAAA CATAGCCAAG AAAAACATAG AAATTCATTT TGGATTCCAA GTTTTGGGTT TTGGGTTTTG GGTTTAAGGT TCAAAGTTTC ATTAACCTAG AATTTAGGAC CTACTCATCG
AAACATAATT TTCAATTTTT GAAACCTGAA ACTACCCTGC ATACCTTGAA ATCTAGAACT TAACATGTTn nTACCATTGG TTCAGTTCTT AGATTTTAGG TTCTACCCCA AAACCATATC
TATCCCTAAT TGATATAATG GCCGTGTTAT GTGGTCTCTC TTGCTTCCAT ATATCATCAA AAATTTCTTT CCTTAAGCTA AGYATGTACT TAYAACTTCA TTTTTTTTAA ATATAAATAT
TTTTAATATA ATTTTAAAAG TTCATATAGT GTTATATGTG AATATTTTTT TAGGTATTCG GTATTAAATA TCGAATCCTA AAGAATAAAG AGATAGTAAC AATGGCAAYG GCTTGAACTC
CACATTGATT TCTCCTGAAC CATGAACCAA CTTGAGATTA TTCAAGTAAA CCTAAGCTGA CTTCGTTTAT TGAATGAAAC AGGGTCGCTT GTTTTAAGTG TCTAATAGGA CTGATTAATT
AAGAAAACAA ATTTGTGAAT CTCTGATATT CACTTCCAAT TTTCATGTTG CAGCCGCGCA TACCATCGGA ACCACnGCAT GCTTCTTCAT GACGGACCGT CTGTACAACT TCATGCCCGG
CGGCGGATCG GACCCTTCGA TCAACCCCGA CTTCTTGCCG GAGCTAAAGT CAATGTGCCC GCAGAACGGC GACGTGAATG TGCGGATGCC AATCGATCAC GGCAGCGAGC AGACATTCGA
CGACCAGATC CTCCGGAACA TCAGGAGYGG ATGGGCCGTT TTGGAGTCGG ACGCGAAGCT AAATGACGAC CCGGTGACGC GGAGCGTGAT CGAATCTTAC RTGGGTCTCT TCAACCCGAT
CTTCGGGCCT TCCTTCGAAG CGGATTTCGT CGAATCAATG GTAAAAATGG GTCAGATCGG TGTCAAGACG AGGGTCAAAT GGAGAGATCA GGCGGGTTTG CAGATCTTTT AA
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Retrieve as FASTA
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CDS►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGATCTAG AGCTCTCACG GGTTCTTGCA CTCCTCGCTT ATTGTTGCTT GATGGGAACG GGTAATGCGC AGCTCAGATT CGGTTTCTAC GGCCAAACCT GCCCTTCTGC CGAGCCCATC
GTGAGATCCG TCGTTCGAAA TGCGGTCATC TCCAACCCCA CCATGGCCGC CGTCTTGCTT CGCCTTCACT TCCATGACTG CTTnnnnnnn nnGGATGTGA TGGTTCAATT CTTATAGAGA
ACGGGCGAAG TGCGGAGAGG AATGCGTTCG GGCACCAAGG GGTGGGCGGA TTTGAGGTGA TCGAGGAAGC CAAGAAGCAC CTCGAGGTCA CTTGCCCCGG TGTCGTCTCG TGCGCCGACA
TTGTTGCCTT AGCGGCTAGA GATGCTGTCG CAATGGCAAA TGGGCCTGAT TATGAGGTTC CGACGGGGCG CCGGGATGGG AGGGTGTCAA ATGTGTCGCT GGCCGAGGAC ATGCCGGACG
TCGGCAACTC CATCCAACAG CTCAAGTCCA AGTTCTTCCA GAAAGGCCTC CCCGAAAAGG ACCTCGTCCT CCTAAGCGCC GCGCATACCA TCGGAACCAC CGCATGCTTC TTCATGACGG
ACCGTCTGTA CAACTTCATG CCCGGCGGCG GATCGGACCC TTCGATCAAC CCCGACTTCT TGCCGGAGCT AAAGTCAATG TGCCCGCAGA ACGGCGACGT GAATGTGCGG ATGCCAATCG
ATCACGGCAG CGAGCAGACA TTCGACGACC AGATCCTCCG GAACATCAGG AGCGGATGGG CCGTTTTGGA GTCGGACGCG AAGCTAAATG ACGACCCGGT GACGCGGAGC GTGATCGAAT
CTTACCTGGG TCTCTTCAAC CCGATCTTCG GGCCTTCCTT CGAAGCGGAT TTCGTCGAAT CAATGGTAAA AATGGGTCAG ATCGGTGTCA AGACGAGGGT CAAATGGAGA GATCAGGCGG
GTTTGCAGAT CTTTTAA
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Retrieve as FASTA
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