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Entry information : BnaCcP04
Entry ID 11108
Creation 2012-06-04 (Christophe Dunand)
Last sequence changes 2012-06-04 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-06-04 (Christophe Dunand)
Peroxidase information: BnaCcP04
Name BnaCcP04
Class Cytochrome C peroxidase    [Orthogroup: CcP004]
Taxonomy Eukaryota Bigelowiella
Organism Bigelowiella natans    [TaxId: 227086 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BnaCcP04
start..stop		 S start..stop
BplCcP02 349 1.35e-122 13..262 19..269
ChrospCcP05 337 7.09e-118 7..257 7..254
CspCcP07 335 6.59e-117 10..259 19..265
CcurCcP03 327 6.94e-114 6..259 9..259
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 642423..642467 43 N° 2 642553..642664 110 N° 3 642886..642912 25 N° 4 643275..643328 52
N° 5 643497..643531 33 N° 6 643658..643695 36 N° 7 643877..643918 40 N° 8 644098..644116 17
N° 9 644249..644295 45 N° 10 644580..644656 75 N° 11 645093..645126 32 N° 12 645276..645351 74
N° 13 645737..645823 85 N° 14 645963..646009 45 N° 15 646089..646146 56  
join(642423..642467,642553..642664,642886..642912,643275..643328,643497..643531, 643658..643695,643877..643918,644098..644116,644249..644295,644580..644656,64509 3..645126,645276..645351,645737..645823,645963..646009,646089..646146)


exon

Literature and cross-references BnaCcP04
DNA ref. JGI genome:   scaffold_43 (642423..646146)
Cluster/Prediction ref. JGI gene:   92621
Protein sequence: BnaCcP04
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   265 (320)
PWM (Da):   %s   29033.64 (35049.0)  
PI (pH):   %s   7.93 (9.90) Peptide Signal:   %s   cut: 24 range:24-343
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MDTDHKRLYGEIARVGPTLVRLAWHSSGTYDKMSRTGGSGLGTIRFKDELAHGANAGLNTAVEWLEPIHAKYNGGISYADLYTLAGITAIETLGGPQIGWRAGRVDAMDPSAVTPDGRLP
AADKGSPQDTAEHLRSIFGRMGFNDQEIVALAGAHALGRGHVNYSGYDGPWTFTPTRFNNAYFDLLLRLEWVPQTTNAGNKQFTDAKTKTLMMLPSDLVLIQDSSFRKFTEMYAGDNAKF
LKDFSKAFQKLEELGTSNLRSVKLS*

Retrieve as FASTA  
Remarks Complete sequence from genomic (14 introns)
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATACAGACCATAAACGATTATACGGCGAGATTGCGAGAGTATAGTAAGCAGCCGTGCAAATTGTGTTTTGGAAGTAAAACCTAGTTCCAAGCGCACTTTTGGTTGCTGCATCTGTG
TGTGTTGTTTAGGGTCCAACGCTTGTTCGACTTGCATGGCATAGTAGCGGCACATATGATAAGATGAGTAGGACGGGTGGAAGCGGATTGGGAACGATTCGATTTAAGGATGAGCTTGCA
CATGTGGTTGGTTCGTTGATAAGGAGGCTTTATAGTAGTAGCCCTTTGGTATGATGATGATGATGATGATGATGATGATCATGATGATACACCATGGGTGAGAAACTGTATTCGAGTCAG
CAAAGTCATCCCACGCCGATATACTCGAGCAGCAGCCATCGTCATGTGCTTAACGAAAATAGCCTGAATTTTCCTTTATCATTCACTCCTTTTTCTGAAACAACTAGGTGCAAATGCAGG
CCTAAACACAGCAGAGGTGAGTTCCGTCCGTGCACTACGCACGGCGTGTTCGTTGTATGGCTTCTTCGTGGCCTACCTACCTGCCAGAAATTGAAAATCGCAATGTGTCCTTAATCATGA
TGATGATGATGAATGCCACATTACGAAGTAGCTGCTAATGCTACTGCTGCTGCTGTCTAGATAGATAGACGTGCTACTACTGCTACTACTACTACTACTATTTCCACTACAACTACTACA
CAGTTGACGCCTCCTCCTTATTGCTGACCTATCGATCATTGTATGTGTACTGGTTATCTTACACAAGTCACAGTATAATCAACATTATGATATCGTCATCATCGTCATCGTTCTGATCAT
CATCATTGTCGTGGTCAGTCGAATGGTTGGAGCCTATTCATGCCAAGTACAATGGTGGGATTAGCTATGCAGAGGTGGTTATCATCATCATCATCATTATCATCATTATCATCATCAAAG
TTAGCATAAATAGCTTGTACCAATGAATATAAGTTTCACTTCGTTGTGCCTTATCATCACCCTCCCTACTACCACCACCACGACTACTACTACGACTACTGCTACCATCATCTTGATTGC
AGATCTATACACTCTTGCTGGTATCACTGCAATCGAGAGGTAGTGCTTCTTGGTGCCATCGTCTTGTCCTCCTCGTTGTCGTTGTAACCGACTGATGATAAATAAAATACCAGTGGTCGT
ACTAATACTACATGTCATTGTTGCTGTTTATCGCGTACAATGTAGACGCTAGGAGGACCACAAATTGGGTGGAGAGCTGGAAGAGGTAGTAATACATGGATGATGATGAAGAAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAGCAAGATCATCATATGCTTTGAATACTTGCATCGATTTCATATTGGGGAGGGACGGTGGTGGTGTATCGTGTCTGTTTGCATGTGTTTGATGGAGATGT
TGGCGGCAATAATGTATGTTGTATAGAGTCGATGCAATGGACCCTTCAGCTGTCACTCCGGATGGACGCGGTGAAGATCGATAAATACGACTGATAATGATGGTGGTGATGATGATATCG
AAACGATGGATTTATGATGATAACGAGAAAAAGCTATGCTGGGATTCTTGTGCTAATTCTGACATATCTGTTTATCGATCATATCGTCGTCTTACTCGGTGCTGCTGCTGGAAACACATA
AATGTAAAGCCTTCCAGCTGCGGACAAGAGGTAAGATAGAAGAAGGCGAATATCACATTTTCTTCTCATTTTCCACACACACACACACATATGAATAGTCAATACGACGCCAAGGGTAGT
TAATTAAATGACGTGAGGCTGGCTTCTACCTAATACTCACAGGGAAGTCCTCAAGACACTGCAGAGCACTTAAGATCGATTTTCGGAAGAGGTATTTATCTATTGCTGCCTCCTATGTTA
TGATAATGTCGTATTCGTGGTGGTGGTTTTTCCTTATTGTCATTCGTTAATGATTACTTCATTCCATCCTCTGCCTTATAAGCGCTTTTGTCTTTATTTTCACATATCATATCGTTATGA
CGGCATCGACGCATACGTTACTACGATAAAATAAGTTCTATAAGTACCATCATCATCATCATCATCATCATCATCACTATCACCATCCTACTAGCATCGTCATCTCTTCATCATCCATTT
TTACACAATACTCAGAATGGGATTTAACGATCAAGAAATTGTGGCCTTAGCTGGCGCTCATGCACTGGGACGGGGTCACGTAAACTACTCAGAGGTTAATGCATATATATATATATATAT
ATATATATATATAATATAACAAAGGGTGATGATACCACCCTCTATATTATAGCAAATATTAGAAGTAGCACCATCAAAATCGTTCCTAGCGGTGCATGCACTCACATGGAGCGATACTAC
ATTGAAAGTCGTCAATATTTTTCTTGCATCTATCGTGGTTATATGCTTATATTGTGTCGGAACGATACTACTACAAATTCCTAATATACTCATGTCGATGATACAATTTATGATGATGAT
GATGATGATGATGATGATGATGATGATGATAACGATGACGACGACGTATTTAAACACGTACTATCACGACGTGAGTTCCTTTCTCTTCTTCTTTCCTTCTTACTGATATGATGATGATAC
TGCTGCTGTGACTGTTGTTCGCCCCCCCCCCCCCTTTTCACCACGCGTAGGTTATGATGGGCCTTGGACATTCACTCCTACCAGAGGTTAGATGGGGTGAGGGGGTGATGCATGGAAGGA
TGATGGTATCAGAATGATGCATCATGATAATATGATTAAAAATCGTCATTAGCCATAACACAGCGGGTAGTGTTATGTCCACAATTTATCGTCATCGTAACGACGTTTTTGGTAGGTTCA
ACAATGCATACTTTGATCTGCTACTACGGCTTGAATGGGTGCCTCAAACAACGAATGCAGGGAACAAGCAGAGGTAGTAGAGTAGGCAAATCAACAATGGCCATACAATAACATGAATGG
GGTCCTCGCAATAAATATGCTAGCTGCGAGCTCAAACTATAGCTGAAGAAGTAGAAATATGATGATAATATTCATTATGAGGAAGAAGCATGTGGAGACTGTTGGTAGCACTCGAAACAC
CATCACCGCCAATATCTTTTTCTTCCTCCTCCTCATCGTCGGCGTCGTCATTATCATGATTGCCATCAAGTGCTGTACATCTTAACGATGCTGTACCTAGCTAGTCTATTTGTGAAGGTA
GTTACCATGTATCTTTTAAACCTCCAATGCTTTTACAACTCGTCGTCGTCGTGTTCTTCTCCCTCTTCCTCTGCCTCTTCTCTTTCCATTCTGTGCAGTTTACTGATGCGAAAACCAAGA
CACTAATGATGCTACCATCGGACTTGGTTTTGATTCAAGATTCTAGCTTTAGGAAATTCACTGAGAGGTGTGTGTGCATTCATGTGCAAAGACAGCGGAAACCGATTTGCAACGTATAGA
CCAATTTCATTATTATTACAGCAAGCGCATTTAATTTCCCATAAGTTTCAGGAACTCAAATATAGTTGTGAAATGATGTTCTTCAGATGTACGCAGGAGACAATGCGAAGTTTCTGAAAG
ATTTCTCCAAAGCGCGTAGGCCACCTTTTGAGAATTTGTAGATCGTCCACGCAACCCTAATGCTTCAATATTGTTACATCTTATCAACATTTAGGTTTCAGAAACTTGAGGAGCTTGGAA
CATCTAATTTAAGATCTGTGAAGCTCTCCTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATACAGACCATAAACGATTATACGGCGAGATTGCGAGAGTAGGTCCAACGCTTGTTCGACTTGCATGGCATAGTAGCGGCACATATGATAAGATGAGTAGGACGGGTGGAAGCGGA
TTGGGAACGATTCGATTTAAGGATGAGCTTGCACATGGTGCAAATGCAGGCCTAAACACAGCAGTCGAATGGTTGGAGCCTATTCATGCCAAGTACAATGGTGGGATTAGCTATGCAGAT
CTATACACTCTTGCTGGTATCACTGCAATCGAGACGCTAGGAGGACCACAAATTGGGTGGAGAGCTGGAAGAGTCGATGCAATGGACCCTTCAGCTGTCACTCCGGATGGACGCCTTCCA
GCTGCGGACAAGGGAAGTCCTCAAGACACTGCAGAGCACTTAAGATCGATTTTCGGAAGAATGGGATTTAACGATCAAGAAATTGTGGCCTTAGCTGGCGCTCATGCACTGGGACGGGGT
CACGTAAACTACTCAGGTTATGATGGGCCTTGGACATTCACTCCTACCAGGTTCAACAATGCATACTTTGATCTGCTACTACGGCTTGAATGGGTGCCTCAAACAACGAATGCAGGGAAC
AAGCAGTTTACTGATGCGAAAACCAAGACACTAATGATGCTACCATCGGACTTGGTTTTGATTCAAGATTCTAGCTTTAGGAAATTCACTGAGATGTACGCAGGAGACAATGCGAAGTTT
CTGAAAGATTTCTCCAAAGCGTTTCAGAAACTTGAGGAGCTTGGAACATCTAATTTAAGATCTGTGAAGCTCTCCTAG

Retrieve as FASTA