View Redoxidase 11113

Entry information : TmelGPx01

Entry ID	11113
Creation	2012-06-05 (Christophe Dunand)
Last sequence changes	2012-06-05 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2012-06-05 (Christophe Dunand)

Peroxidase information: TmelGPx01

Name

TmelGPx01

Class

Fungi-Bacteria glutathione peroxidase [Orthogroup: Gpx3001]

Taxonomy

Eukaryota Fungi Ascomycota Pezizomycetes Tuberaceae Tuber

Organism

Tuber melanosporum [TaxId: 39416 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	TmelGPx01 start..stop	S start..stop
ScocGPx01	191	2.45e-63	6..151	13..172
AoliGPx01	177	5.26e-58	1..157	1..173
CfulgGPx01	176	8.56e-57	2..150	56..216
AgoGPx	171	8.89e-55	3..148	26..185

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	800031..800147	115	N° 2	799821..799881	59	N° 3	799755..799791	35	N° 4	799561..799635	73
N° 5	799460..799504	43	N° 6	799382..799395	12	N° 7	799198..799325	126
complement(join(799198..799325,799382..799395,799460..799504,799561..799635,7997 55..799791,799821..799881,800031..800147))

Literature and cross-references TmelGPx01

Protein ref.	UniProtKB: D5GB16
DNA ref.	JGI genome: scaffold_19 (800147..799198)

Protein sequence: TmelGPx01

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	158 (296)
PWM (Da):	17757.39 (30632.1)
PI (pH):	9.9 (5.31)	Peptide Signal:	cut: 21 range:21-316

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MSSATTFYDLEPLDSRNQPYTFNQLKGKVVLIVNVASKYQYEGLEKLYEKYKDQGLEVLGARDRRGDPRCKRVNYGVKFPVLAKIDVNGGDASPVYKWLKDEKAGLLGIKLIKWNEKFLVSREGKVVDRYASTTKPDSLASAIEKELNKGTPPKAEL

Retrieve as FASTA

Remarks

Complete sequence from genomic (6 introns).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGTCTTCCGCTACCACTTTCTATGATCTTGAGCCCCTTGACTCTAGAAATCAACCCTATACCTTCAACCAGTTGAAAGGGAAGGTGGTTCTCATTGTCAATGTTGCTAGCAAGTACGTT
ACCCCCCTAACCTACTCCCCTCAGTCTCCGATAAAATTCCCCTTGTCGCTGACGACGACCGCATAGGTGCGGATTCACTCCCGTAAGTTCATTGAACTAAGATTTTCCTATTTGTCAGAT
GGTCAAGTTTACTCATCGGATAATAGCACAATACGAGGGCCTTGAGAAACTTTACGAGAAGTACAAAGACCAGGGGCTCGAAGTGCTTGGTTTCCCGTGTAACCAGTTCGGTGGCCAGGA

GAGCCAGGGACAGACGAGGAGATCCAAGATGTAAGAGGTTCCCTAACACTTCCAGATTGAAAACGACGACTTACTTACCCGTTACAGTTCTGCATGTAGGTTTTTTGTTATATCCTCTTT
GTCTTCACCTTAGCCTAGTGCTAACGGTGATTGAAGGGGGTCAATTACGGCGTTAAGTTCCCTGTTCTCGCCAAGATCGACGTCAACGGGGGTGATGCTTCTCCGGTCTACAAGTACTGC
CCTCAACCTCCTTGATAGGGGCCTTTCATGAGCTAATGATATGGTATAGATATGGCTCAAAGATGAGAAGGCGGGCCTTTTGGGAATAAAGCTCATGTAAGTCTCCCAGCCATATTGAGC
TCTGCCTTCTAGGTTCATCAACTAATAACTCCGCATTTAGAAAAAATGGAACTATGGTAAGAAATTACTGACACTTTGTGCGAGTATCCGATAATGTCTAATGCTTGTGCAGAGAGAAAT
TCCTCGTTTCCAGGGAAGGAAAGGTGGTTGACCGCTATGCCTCCACTACGAAGCCCGACTCGTTGGCCTCTGCTATCGAGAAGGAGCTCAATAAGGGCACTCCCCCGAAAGCTGAATTGT
AG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGTCTTCCGCTACCACTTTCTATGATCTTGAGCCCCTTGACTCTAGAAATCAACCCTATACCTTCAACCAGTTGAAAGGGAAGGTGGTTCTCATTGTCAATGTTGCTAGCAAGTACCAA
TACGAGGGCCTTGAGAAACTTTACGAGAAGTACAAAGACCAGGGGCTCGAAGTGCTTGGAGCCAGGGACAGACGAGGAGATCCAAGATGTAAGAGGGTCAATTACGGCGTTAAGTTCCCT
GTTCTCGCCAAGATCGACGTCAACGGGGGTGATGCTTCTCCGGTCTACAAATGGCTCAAAGATGAGAAGGCGGGCCTTTTGGGAATAAAGCTCATAAAATGGAACTATGAGAAATTCCTC
GTTTCCAGGGAAGGAAAGGTGGTTGACCGCTATGCCTCCACTACGAAGCCCGACTCGTTGGCCTCTGCTATCGAGAAGGAGCTCAATAAGGGCACTCCCCCGAAAGCTGAATTGTAG

Retrieve as FASTA