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Entry information : Tps2CysPrx (ycf42)
Entry ID 11140
Creation 2012-06-08 (Catherine Mathe)
Last sequence changes 2012-06-11 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-06-11 (Christophe Dunand)
Peroxidase information: Tps2CysPrx (ycf42)
Name (synonym) Tps2CysPrx (ycf42)
Class Typical 2-Cysteine peroxiredoxin    [Orthogroup: 2CysPrx001]
Taxonomy Eukaryota Bacillariophyta Coscinodiscophyceae Thalassiosiraceae Thalassiosira
Organism Thalassiosira pseudonana    [TaxId: 35128 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value Tps2CysPrx
start..stop		 S start..stop
Toc2CysPrx 378 7.06e-136 1..212 1..212
Osin2CysPrx 332 1.16e-117 1..211 1..203
Ptr2CysPrx 308 3.5e-108 1..212 1..204
Sacu2CysPrx 263 4.11e-91 1..173 1..173
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 20287..20922 634  
join(20287..20922)


exon

Literature and cross-references Tps2CysPrx (ycf42)
Literature Oudot-Le Secq,M.P., Grimwood,J., Shapiro,H., Armbrust,E.V., Bowler,C. and Green,B.R. Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage. Mol. Genet. Genomics 277 (4), 427-439 (2007)
Protein ref. GenPept:   YP_874512.1
DNA ref. GenBank:   NC_008589.1 (20287..20922)
EST ref. GenBank:   FC481185.1
Protein sequence: Tps2CysPrx (ycf42)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   211
PWM (Da):   %s   24137.95 Transmb domain:   %s   i7-26o
PI (pH):   %s   10.05
Sequence
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Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MVTFPQIGKR APNFVTVGVF KKRLGRIRLS DYRGKKYVLL FFYPANFTPV SPTELINLSD RISEFRKLST QILAVSIDSP FSHLQSLLLS RKEGGLANLN YPLISDLSQT ITKDYKVLTE 
EGLGLPGVFI IDKEGIIQYY TVNNLLCSRS VNELLRILES IQYVKKNPGQ ACPENWHPSS LIGRQQYDQI LYSHPLKSKL YFRDLYSSKK N* 

Retrieve as FASTA  
Remarks Complete sequence coded on chloroplastic genome (no intron) and 3 ESTs .
DNA ►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGTCACTT TTCCTCAAAT TGGAAAACGC GCTCCTAATT TTGTAACTGT TGGGGTTTTT AAAAAAAGAT TAGGTCGAAT TCGTCTTTCG GATTATCGTG GTAAAAAATA TGTATTACTT  TTTTTTTACC CTGCGAATTT TACACCGGTA TCACCTACAG AATTAATAAA TTTAAGTGAT CGTATATCTG AATTCCGTAA ATTATCCACT CAAATTTTAG CAGTTTCAAT TGATAGTCCT  TTTTCTCATC TTCAATCATT ATTATTAAGT CGAAAAGAAG GAGGATTAGC AAATTTAAAT TACCCTTTAA TTTCAGATTT AAGTCAAACT ATTACAAAGG ATTATAAGGT TTTAACAGAA  GAAGGATTAG GTTTGCCAGG CGTATTCATT ATTGACAAAG AAGGAATAAT TCAATATTAT ACTGTTAACA ATTTATTATG TAGTCGGAGT GTAAATGAAT TACTTCGTAT TCTTGAATCA  ATCCAATATG TGAAAAAAAA TCCAGGACAA GCTTGTCCTG AAAACTGGCA CCCTTCTTCC CTTATTGGGC GTCAACAATA TGATCAAATT CTTTATTCAC ATCCTCTAAA GTCTAAACTT 
TATTTTAGAG ATTTATACTC TTCTAAAAAA AATTAA 

Retrieve as FASTA  
CDS►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGTCACTT TTCCTCAAAT TGGAAAACGC GCTCCTAATT TTGTAACTGT TGGGGTTTTT AAAAAAAGAT TAGGTCGAAT TCGTCTTTCG GATTATCGTG GTAAAAAATA TGTATTACTT  TTTTTTTACC CTGCGAATTT TACACCGGTA TCACCTACAG AATTAATAAA TTTAAGTGAT CGTATATCTG AATTCCGTAA ATTATCCACT CAAATTTTAG CAGTTTCAAT TGATAGTCCT  TTTTCTCATC TTCAATCATT ATTATTAAGT CGAAAAGAAG GAGGATTAGC AAATTTAAAT TACCCTTTAA TTTCAGATTT AAGTCAAACT ATTACAAAGG ATTATAAGGT TTTAACAGAA  GAAGGATTAG GTTTGCCAGG CGTATTCATT ATTGACAAAG AAGGAATAAT TCAATATTAT ACTGTTAACA ATTTATTATG TAGTCGGAGT GTAAATGAAT TACTTCGTAT TCTTGAATCA  ATCCAATATG TGAAAAAAAA TCCAGGACAA GCTTGTCCTG AAAACTGGCA CCCTTCTTCC CTTATTGGGC GTCAACAATA TGATCAAATT CTTTATTCAC ATCCTCTAAA GTCTAAACTT 
TATTTTAGAG ATTTATACTC TTCTAAAAAA AATTAA 

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
AATTAAAAAT TTTGTGTAAC TAATTTAAAA TGGTCACTTT TCCTCAAATT GGAAAACGCG CTCCTAATTT TGTAACTGTT GGGGTTTTTA AAAAAAGATT AGGTCGAATT CGTCTTTCGG  ATTATCGTGG TAAAAAATAT GTATTACTTT TTTTTTACCC TGCGAATTTT ACACCGGTAT CACCTACAGA ATTAATAAAT TTAAGTGATC GTATATCTGA ATTCCGTAAA TTATCCACTC  AAATTTTAGC AGTTTCAATT GATAGTCCTT TTTCTCATCT TCAATCATTA TTATTAAGTC GAAAAGAAGG AGGATTAGCA AATTTAAATT ACCCTTTAAT TTCAGATTTA AGTCAAACTA  TTACAAAGGA TTATAAGGTT TTAACAGAAG AAGGATTAGG TTTGCCAGGC GTATTCATTA TTGACAAAGA AGGAATAATT CAATATTATA CTGTTAACAA TTTATTATGT AGTCGGAGTG  TAAATGAATT ACTTCGTATT CTTGAATCAA TCCAATATGT GAAAAAAAAT CCAGGACAAG CTTGTCCTGA AAACTGGCAC CCTTCTTCCC TTATTGGGCG TCAACAATAT GATCAAATTC  TTTATTCACA TCCTCTAAAG TCTAAACTTT ATTTTAGAGA TTTATACTCT TCTAAAAAAA ATTAAAATTT TATGCCTAAA TTAAAAACTC GAAAAGCAGC CTTAAAACGC TATAAAAAAA  CAGGTGCAGG TAATTTTTTA CGTCGCCACG CGTATAAAGG CCATCTTTTA ATGAAAAAAT CAAATGCTCA AAAACGAAAA CTATCACAAA GAGTTTGTGT ATCTTCTGGT GATAGTAAAC  CTATTAAATT AATGTTACCT TATTAAAAAT AAACAATGGT AAGAGTTAAA CGAGGAAATG TTGCCCGTAA ACGTCGGAAG AAAATTTTAC AACTTGCCAA AGGTTACAGA GGTGCGCACT  CTCGTCTTTT TAGAGTTGCT AACCAACAAG TAATGAAAGC TTTACGTTAT TCATATGTAG GAAGAAAACA AAAAAAACGT GTTTTCCGAA AATTATGGAT TAGTAGAATA AATGCATCTT 
CAAGAGAAAA AGGCGTTACA TATAGTACTT TAATCAATTC TTTTTAAAAA TCAAAAA 

Retrieve as FASTA