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Entry information : CroPrx28(CRO_T032926 / cra_locus_664_iso_2_len_1288_ver_3)
Entry ID 11286
Creation 2012-08-22 (Christophe Dunand)
Last sequence changes 2012-08-22 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2020-04-10 (Christophe Dunand)
Peroxidase information: CroPrx28(CRO_T032926 / cra_locus_664_iso_2_len_1288_ver_3)
Name CroPrx28(CRO_T032926 / cra_locus_664_iso_2_len_1288_ver_3)
Class Class III peroxidase    [Orthogroup: Prx002]
Taxonomy Eukaryota Viridiplantae Streptophyta Apocynaceae Catharanthus
Organism Catharanthus roseus    [TaxId: 4058 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CroPrx28
start..stop		 S start..stop
NtPrx41-1A 542 0 11..336 6..329
LePrx14 541 0 11..336 6..328
StPrx15 534 0 22..336 17..328
NtPrx41-1B 532 0 12..336 5..329
Literature and cross-references CroPrx28(CRO_T032926 / cra_locus_664_iso_2_len_1288_ver_3)
Protein sequence: CroPrx28(CRO_T032926 / cra_locus_664_iso_2_len_1288_ver_3)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   336 (311)
PWM (Da):   %s   36928.33 (34218.8) Transmb domain:   %s   i2-24o
PI (pH):   %s   8.38 (8.38) Peptide Signal:   %s   cut: 26 range:26-336
Sequence
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*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAAFFPLALA LLFVFLSVLF NPSLSQSHYR PSQLSTNYYQ KNCPRFEQIM EDTTTNKQIN SPTTAAGTLR LFFHDCFVSG CDASVLISST PFNKAERDAD INLSLPGDGF DVVVRAKTAL  ELACPGVVSC ADILAVATRN LVVMAGGPFY PVKLGRKDGL VSRASTVEGN LPRPTMSMDE IIKIFQSRGF SIQEMVALSG AHTIGFSHCK EFSTNIYNYS KTVQSDPSYN PRFASALKNA 
CADFQKNPSL SVFNDVMSPS KFDNMYYQNL PRGMGLLSSD RALISDPRTR SYAELYGRDQ NAFFTAFAQA MQKLGEFGVA TGRRGEIRHR CDAFNH 

Retrieve as FASTA  
Remarks Complete sequence from genomic and EST. Incorrect prediction (Only exons 3 and 4 precicted).
DNA ►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCGGCCT TTTTTCCTTT AGCTTTGGCA TTGTTGTTTG TTTTCTTATC AGTACTATTC AACCCTTCAC TTTCACAGTC CCATTACCGT CCTTCTCAGC TCAGTACTAA CTATTACCAG  AAAAACTGCC CGAGATTTGA ACAGATCATG GAAGATACCA CCACCAATAA ACAGATCAAC TCCCCTACCA CCGCCGCCGG TACTCTCCGC CTCTTCTTCC ACGACTGCTT CGTCAGCGGC  TGCGACGCTT CCGTTCTCAT TTCCTCCACT CCTTTCAATA AAGCCGAGCG TGATGCCGAC ATCAACCTCT CCCTTCCCGG CGATGGATTC GACGTTGTTG TCCGTGCCAA AACTGCTCTT  GAGCTAGCCT GTCCCGGAGT TGTCTCCTGT GCCGATATAT TAGCCGTAGC TACCCGGAAT CTCGTCGTTA TGGCCGGCGG ACCTTTTTAC CCCGTGAAAT TAGGTCGGAA AGATGGTTTA  GTGTCCAGAG CTTCTACCGT AGAAGGAAAT CTTCCCCGAC CGACGATGTC GATGGATGAA ATCATCAAAA TCTTCCAGTC GAGAGGCTTT TCGATTCAGG AAATGGTCGC ATTGTCCGGC  GCACACACAA TCGGATTCTC ACACTGCAAA GAATTCAGCA CAAACATTTA CAATTACAGC AAAACCGTCC AAAGTGATCC TTCTTACAAC CCCAGGTTCG CTTCAGCTCT AAAAAATGCC  TGTGCTGATT TCCAGAAGAA TCCATCGTTA TCTGTGTTCA ACGATGTGAT GTCTCCTAGC AAATTTGACA ATATGTACTA CCAAAATCTA CCGAGGGGAA TGGGCCTATT GTCGTCGGAC  CGAGCTCTGA TTTCCGATCC GAGAACGAGG AGTTACGCGG AATTGTACGG AAGAGATCAG AATGCGTTCT TCACGGCATT TGCTCAGGCA ATGCAGAAGC TGGGTGAGTT TGGGGTGGCC 
ACCGGACGGC GAGGTGAGAT TAGGCACAGG TGCGATGCCT TTAATCACTA A 

Retrieve as FASTA  
CDS►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCGGCCT TTTTTCCTTT AGCTTTGGCA TTGTTGTTTG TTTTCTTATC AGTACTATTC AACCCTTCAC TTTCACAGTC CCATTACCGT CCTTCTCAGC TCAGTACTAA CTATTACCAG  AAAAACTGCC CGAGATTTGA ACAGATCATG GAAGATACCA CCACCAATAA ACAGATCAAC TCCCCTACCA CCGCCGCCGG TACTCTCCGC CTCTTCTTCC ACGACTGCTT CGTCAGCGGC  TGCGACGCTT CCGTTCTCAT TTCCTCCACT CCTTTCAATA AAGCCGAGCG TGATGCCGAC ATCAACCTCT CCCTTCCCGG CGATGGATTC GACGTTGTTG TCCGTGCCAA AACTGCTCTT  GAGCTAGCCT GTCCCGGAGT TGTCTCCTGT GCCGATATAT TAGCCGTAGC TACCCGGAAT CTCGTCGTTA TGGCCGGCGG ACCTTTTTAC CCCGTGAAAT TAGGTCGGAA AGATGGTTTA  GTGTCCAGAG CTTCTACCGT AGAAGGAAAT CTTCCCCGAC CGACGATGTC GATGGATGAA ATCATCAAAA TCTTCCAGTC GAGAGGCTTT TCGATTCAGG AAATGGTCGC ATTGTCCGGC  GCACACACAA TCGGATTCTC ACACTGCAAA GAATTCAGCA CAAACATTTA CAATTACAGC AAAACCGTCC AAAGTGATCC TTCTTACAAC CCCAGGTTCG CTTCAGCTCT AAAAAATGCC  TGTGCTGATT TCCAGAAGAA TCCATCGTTA TCTGTGTTCA ACGATGTGAT GTCTCCTAGC AAATTTGACA ATATGTACTA CCAAAATCTA CCGAGGGGAA TGGGCCTATT GTCGTCGGAC  CGAGCTCTGA TTTCCGATCC GAGAACGAGG AGTTACGCGG AATTGTACGG AAGAGATCAG AATGCGTTCT TCACGGCATT TGCTCAGGCA ATGCAGAAGC TGGGTGAGTT TGGGGTGGCC 
ACCGGACGGC GAGGTGAGAT TAGGCACAGG TGCGATGCCT TTAATCACTA A 

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CTCAAAAAAT CTAAAGGGAA AACACTTTTG TTCTTCATTC TGAGTCTGAG GAGAGAGATT GAGCAAGTGG CTAATCTAAG AAGAAGAAGA AGAGATCATT AGCAGAATCC ATTAATGGCG  GCCTTTTTTC CTTTAGCTTT GGCATTGTTG TTTGTTTTCT TATCAGTACT ATTCAACCCT TCACTTTCAC AGTCCCATTA CCGTCCTTCT CAGCTCAGTA CTAACTATTA CCAGAAAAAC  TGCCCGAGAT TTGAACAGAT CATGGAAGAT ACCACCACCA ATAAACAGAT CAACTCCCCT ACCACCGCCG CCGGTACTCT CCGCCTCTTC TTCCACGACT GCTTCGTCAG CGGCTGCGAC  GCTTCCGTTC TCATTTCCTC CACTCCTTTC AATAAAGCCG AGCGTGATGC CGACATCAAC CTCTCCCTTC CCGGCGATGG ATTCGACGTT GTTGTCCGTG CCAAAACTGC TCTTGAGCTA  GCCTGTCCCG GAGTTGTCTC CTGTGCCGAT ATATTAGCCG TAGCTACCCG GAATCTCGTC GTTATGGCCG GCGGACCTTT TTACCCCGTG AAATTAGGTC GGAAAGATGG TTTAGTGTCC  AGAGCTTCTA CCGTAGAAGG AAATCTTCCC CGACCGACGA TGTCGATGGA TGAAATCATC AAAATCTTCC AGTCGAGAGG CTTTTCGATT CAGGAAATGG TCGCATTGTC CGGCGCACAC  ACAATCGGAT TCTCACACTG CAAAGAATTC AGCACAAACA TTTACAATTA CAGCAAAACC GTCCAAAGTG ATCCTTCTTA CAACCCCAGG TTCGCTTCAG CTCTAAAAAA TGCCTGTGCT  GATTTCCAGA AGAATCCATC GTTATCTGTG TTCAACGATG TGATGTCTCC TAGCAAATTT GACAATATGT ACTACCAAAA TCTACCGAGG GGAATGGGCC TATTGTCGTC GGACCGAGCT  CTGATTTCCG ATCCGAGAAC GAGGAGTTAC GCGGAATTGT ACGGAAGAGA TCAGAATGCG TTCTTCACGG CATTTGCTCA GGCAATGCAG AAGCTGGGTG AGTTTGGGGT GGCCACCGGA  CGGCGAGGTG AGATTAGGCA CAGGTGCGAT GCCTTTAATC ACTAATGAAC CTTCCTTAAT TAATCAACTA AAAGTGGTGA CGAATTATGT TTGGAATTTT TGTTTATTTA TTTCCAATTC 
TTTTTTTTTT TTTGGATGTG ATAAATTTGA TAATTTATGT ATACTGTGAC GCTGGTTTTA GCTTAATTAA TTTCCAAAAA AAAAAAAG 

Retrieve as FASTA