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Entry information : LuPrx03 (FLXPER3|Lus10028735|PACid:23164544)
Entry ID 113
Creation 2006-06-19 (Christophe Dunand)
Last sequence changes 2013-05-29 (Qiang Li)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2014-03-19 (Christophe Dunand)
Peroxidase information: LuPrx03 (FLXPER3|Lus10028735|PACid:23164544)
Name (synonym) LuPrx03 (FLXPER3|Lus10028735|PACid:23164544)
Class Class III peroxidase    [Orthogroup: Prx005]
Taxonomy Eukaryota Viridiplantae Streptophyta Linaceae Linum
Organism Linum usitatissimum (flax)    [TaxId: 4006 ]
Cellular localisation Cell wall
Tissue types Leaves
Seedlings
Stems
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LuPrx03
start..stop		 S start..stop
LuPrx156 714 0 1..357 1..357
PtPrx67 501 5.35e-180 8..356 11..353
NnPrx26 499 4.19e-179 29..344 37..350
BvPrx25 492 3.24e-176 5..348 2..343
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '113' 'complement(join(1124261..1124500,1124865..1125260,1125360..1125557,1126241..1126480))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1126241..1126480 238 N° 2 1125360..1125557 196 N° 3 1124865..1125260 394 N° 4 1124261..1124500 238
complement(join(1124261..1124500,1124865..1125260,1125360..1125557,1126241..1126 480))


exon

Literature and cross-references LuPrx03 (FLXPER3|Lus10028735|PACid:23164544)
Literature Day A, Fénart S, Neutelings G, Hawkins S, Rolando C, Tokarski C. Identification of cell wall proteins in the flax (Linum usitatissimum) stem. Proteomics. 2013 13(5):812-25.
Protein ref. UniProtKB:   Q43782
DNA ref. Phytozome 12:   scaffold346 (1126480..1124261)
mRNA ref. GenBank:   U59284
Protein sequence: LuPrx03 (FLXPER3|Lus10028735|PACid:23164544)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   357 (331)
PWM (Da):   %s   38241.47 (35670.1) Transmb domain:   %s   i7-29o
PI (pH):   %s   7.74 (7.72) Peptide Signal:   %s   cut: 27 range:27-357
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAPTSSHVVALTIMLSAVLFASTATAQIPAPAKGMSWTFYKSSCP
KLESIITKRLKEVFKKDIGQAAGLLRLHFHDCFVEGCDGSVLLTGSAGGPSAEQGSPPNLSLRKEAFRIIDDLRARVHKECGRVVSCSDIVAIAARDSVVLSGGPKYQVALGRRDGTTLVTQDTTLANLPPPFATTGTILSSLATKNLNPTDAVA
LSGAHTIGISHCSSFTDRLYPNQDPSMDQTFAKNLKATCPQAATTDNIVNQDIRSPNVFDNKYYVDLMNRQGLFTSDQDLYTDSRTRGIVTSFAINQTLFFEKFVVAMIKMGQISVLTGK
QGEIRANCSLTNSAKVQTSSFLEEAVEEAVELLAGMR*

Retrieve as FASTA  
Remarks Complete sequence from genomic and 2 ESTs. Experimental evidency of cell wall localization. Cultivar="Stormont cirrus".
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTCCCACTTCTTCCCATGTCGTCGCTCTAACGATCATGTTGTCGGCGGTGTTGTTCGCATCCACGGCGACGGCTCAGATTCCGGCGCCGGCGAAAGGAATGTCGTGGACTTTCTAC
AAGTCCTCCTGCCCCAAGCTCGAGTCCATCATCACTAAGCGCCTCAAGGAAGTGTTCAAGAAGGACATCGGCCAGGCCGCAGGCTTGCTCCGCCTCCACTTCCATGACTGCTTCGTCGAG
GTACACATAAAATTTCGTCACTTTGGAATCAGGAAATCTTGTCATCTAAGTTCGTCTACTCTTGATTTCGCCATTTTTTGCTGGCTAAGAGCCCTGATTACTCATAATGATTCCTGATTC
CGCCATTTGTTGCTGACTAAGAGCCATGATTACTCATAATTACTAGCTTCTAGTGTAGATGGATTTTTATTTTTAACTGGGTTGTTGAAAATTCAAAAATATAATTTTTTTCTCTCTTGT
AGCTAGAATTATTAAATGTGGGGTTGTTGTACTATTACTAGTATTATTGTGTCAAATATTATTCAAATGTGACATATCAAGAATTTAGTGGAATGAATGATTAGGATTTTCTAATTTGAG
TTTTCATAGTCGAGCTGGTAATTAAATTAGGTAATATATCATATATTAGATGTATTGAATTTGAATAATATTTTTTGTGAAATGGTTGGTACTCGTGTGGACGTTTTAGATGGCCACTCG
TGTATGTGCTTCGTTATTCATGTTCGGAGCATTAAAATTAGTTAATTATTTGATATGGAAACATCAATAATTCATATAGTTCCATACAACCACCAAGTTATGGAGAAATAAATTCTATGG
ATGGTGAAGGAAATCTGGCTATGGATATTTTGTTGTATGGGAAATCAAAATAATTTTATTTTATTTATTATAATTATTTTCAGGGGGATGTGATGGATCGGTGTTGCTGACTGGATCGGC
AGGTGGGCCCAGCGCGGAGCAAGGGTCCCCACCTAACTTGAGCCTGAGGAAAGAAGCCTTCCGAATCATCGACGACCTCCGTGCACGTGTCCACAAGGAGTGCGGCCGCGTCGTCTCTTG
CTCCGACATTGTCGCTATAGCTGCCCGTGACTCCGTCGTCCTGGTAAAATCGAGTCGAACGAATTTGGTTAGATAGAATTTATCGATTTCCTTTCCGGTTTAATTTAATGTAACTAATGT
GTGTATTTTTTTTATTCCATAGTCTCTGGTGGGCCAAAGTACCAAGTGGCGTTAGGCCGCCGCGACGGTACAACGTTAGTAACACAAGACACCACCTTGGCCAACCTCCCGCCCCCGTTT
GCCACTACGGGAACCATCCTGAGCTCCCTCGCCACCAAGAACCTCAACCCGACCGACGCGGTCGCACTGTCTGGGGCCCACACCATCGGGATCAGCCACTGCTCCTCCTTCACCGACCGC
CTCTACCCTAACCAGGATCCCTCCATGGACCAGACCTTCGCCAAAAACCTCAAGGCCACGTGTCCTCAGGCTGCCACGACCGACAACATTGTCAACCAGGACATTCGGTCCCCGAACGTG
TTCGACAACAAGTATTATGTTGACTTGATGAACCGACAGGGCCTCTTCACCTCCGACCAGGTATGGTTTGGTTCCTATTCGGATATTTGATATTAGTTTATAAATATTCTAATTAATTTG
AAGGACAGAAGAATTATTTATTCAAGTATTTTTCAAACATTTAAACTTTATGAATCATTAATAAAGCTTTCTCAAGTTATGCAACTTAACCTTTTTATTTCATACTTCATAACTACAAAA
TAAAACAAACTATTCTAAATATAAAATATCTTGTCACAAAAATATTTTCAATCGAAATTTAATTGACTTATCAACTTCGGGTATAGTTTTTGAATGAATACTTCAATATTTATTCCCTAC
CTCGTACATAAACTTTTTTGAGTAACCATAACTAACGGTTTATAATTGCAATCTCTACGACCAGGAGACTTATACACCGACTCGCGAACCCGTGGGATTGTTACAAGTTTCGCGATCAAC
CAGACCCTGTTTTTCGAGAAGTTTGTCGTGGCTATGATCAAGATGGGGCAGATAAGCGTGTTGACCGGTAAACAAGGGGAGATCAGAGCTAACTGTTCGCTAACGAACTCCGCGAAGGTA
CAAACGTCTTCGTTCTTGGAGGAAGCTGTGGAGGAGGCTGTCGAGCTTTTGGCTGGGATGAGATAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTCCCACTTCTTCCCATGTCGTCGCTCTAACGATCATGTTGTCGGCGGTGTTGTTCGCATCCACGGCGACGGCTCAGATTCCGGCGCCGGCGAAAGGAATGTCGTGGACTTTCTAC
AAGTCCTCCTGCCCCAAGCTCGAGTCCATCATCACTAAGCGCCTCAAGGAAGTGTTCAAGAAGGACATCGGCCAGGCCGCAGGCTTGCTCCGCCTCCACTTCCATGACTGCTTCGTCGAG
GGATGTGATGGATCGGTGTTGCTGACTGGATCGGCAGGTGGGCCCAGCGCGGAGCAAGGGTCCCCACCTAACTTGAGCCTGAGGAAAGAAGCCTTCCGAATCATCGACGACCTCCGTGCA
CGTGTCCACAAGGAGTGCGGCCGCGTCGTCTCTTGCTCCGACATTGTCGCTATAGCTGCCCGTGACTCCGTCGTCCTGTCTGGTGGGCCAAAGTACCAAGTGGCGTTAGGCCGCCGCGAC
GGTACAACGTTAGTAACACAAGACACCACCTTGGCCAACCTCCCGCCCCCGTTTGCCACTACGGGAACCATCCTGAGCTCCCTCGCCACCAAGAACCTCAACCCGACCGACGCGGTCGCA
CTGTCTGGGGCCCACACCATCGGGATCAGCCACTGCTCCTCCTTCACCGACCGCCTCTACCCTAACCAGGATCCCTCCATGGACCAGACCTTCGCCAAAAACCTCAAGGCCACGTGTCCT
CAGGCTGCCACGACCGACAACATTGTCAACCAGGACATTCGGTCCCCGAACGTGTTCGACAACAAGTATTATGTTGACTTGATGAACCGACAGGGCCTCTTCACCTCCGACCAGGACTTA
TACACCGACTCGCGAACCCGTGGGATTGTTACAAGTTTCGCGATCAACCAGACCCTGTTTTTCGAGAAGTTTGTCGTGGCTATGATCAAGATGGGGCAGATAAGCGTGTTGACCGGTAAA
CAAGGGGAGATCAGAGCTAACTGTTCGCTAACGAACTCCGCGAAGGTACAAACGTCTTCGTTCTTGGAGGAAGCTGTGGAGGAGGCTGTCGAGCTTTTGGCTGGGATGAGATAA

Retrieve as FASTA