View Redoxidase 12051

Entry information : LuGPx212(Lus10042692|PACid:23181815)

Entry ID	12051
Creation	2013-05-28 (Qiang Li)
Last sequence changes	2013-05-29 (Qiang Li)
Sequence status	partial
Reviewer	Not yet reviewed
Last annotation changes	2013-05-30 (Qiang LI)

Peroxidase information: LuGPx212(Lus10042692|PACid:23181815)

Name

LuGPx212(Lus10042692|PACid:23181815)

Class

Plant glutathione peroxidase [Orthogroup: N/D] N/D

Taxonomy

Eukaryota Viridiplantae Streptophyta Linaceae Linum

Organism

Linum usitatissimum (flax) [TaxId: 4006 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	LuGPx212 start..stop	S start..stop
LuGPx165	216	7.75e-74	1..107	1..107
PtGPx05	191	2.91e-64	1..108	1..108
EguGPx09	191	5.8e-64	1..108	1..108
EgrGPx09	190	5.99e-64	1..108	1..108

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '12051' 'join(1542631..1542684,1542780..1542856,1542999..1543060,1543216..1543334,1544472..1544507)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1542631..1542684	52	N° 2	1542780..1542856	75	N° 3	1542999..1543060	60	N° 4	1543216..1543334	117
N° 5	1544472..1544507	34
join(1542631..1542684,1542780..1542856,1542999..1543060,1543216..1543334,1544472 ..1544507)

Literature and cross-references LuGPx212(Lus10042692|PACid:23181815)

DNA ref.	Phytozome 12: scaffold67 (1542631..1544507)

Protein sequence: LuGPx212(Lus10042692|PACid:23181815)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	115
PWM (Da):	13057.45
PI (pH):	5.18

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MGVSGSVPEKSIHEFAVKDSRGKDVELSIYQGKVLLVVNVASKCGFTDTNYTQLTDLYRKYKDQGFEILAFPCNQFLNQEPGTSEEAQEFACTRYKAEYPIFQKTHIQKELGDQE*

Retrieve as FASTA

Remarks

Partial sequence from genomic. Incorrect prediction. 3' end is missing.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGGGGTTTCTGGGTCAGTACCGGAGAAATCAATCCACGAATTCGCCGTCAAGAGGTTTGAGCTTTTTACTCATCGCAAGTCGGACCCATTTAAATTCTCTGTTTTCATCTTTTTGATT
TTTCTGTTTCTAATAATTCTCTGATTCGCAGGATAGCAGAGGTAAGGATGTGGAGCTCAGCATCTACCAGGGGAAGGTTCTTCTCGTTGTTAACGTCGCTTCCAAATGTGGTAATTGAGA
GTTGCAAAACTTCTTTCTTTGAGGATGTTGTTATGGTTTGTTTAATTTCTTGCCTTCTGTGGACAACGAAGATCTTCTTTGTTTTCTCATTTCTTCATCCCCTTTCTCTTCTTTTTTTGT
TCATTGGAGCAGCGGTTTCACTGATACAAATTACACCCAGTTGACTGATCTCTATCGCAAATACAAGGACCAAGAGGTTCGCTATACACTTAACTCAGCACTTCCATTTCACTTTGTTCT
AAGTTAAAGTGTCAACTCAGCATCTCTTATTCTCTTTGCATCTATCTGGAAATAGATGTCAGCAGATTTGGACTCTTTTAATAACAGTGTAGTTCTATGCTTTGATGGCAGGTTTTGAAA
TTCTGGCATTCCCTTGCAACCAATTCTTGAACCAGGAGCCTGGCACTAGTGAGGAGGCACAAGAGTTTGCTTGTACAAGATACAAGGCTGAGTATCCCATTTTCCAAAAGAGGTGATTGA
TTAATTAATAGATCAAACCTTTTGACAACATTTCTTTCTGTTTGAAACAATCTGGAATTTGATTTTGATTGGTGGTGTTACAATAATCCAATTCTCCCAAACTTGGTACTTCATCTGGGG
TCTTGGTCACTTCGACCATTCGCATTACCCTCACGAGCTTGCTGCATCATATAGGATTGGTTAAGAGAGAAATACAGCAAAGAGATGGCCTCTGAAATGATTTCAGTACATGTTTTCAGT
GTAGTGAGTCGCAATTTTGATTGTAAAATCTTATGGTCTTACAATTTTGATTTTGATTCCCCGCAAGGTTCATGTAATAAGTGGAAATTATCCATTGGTCACCTGTGCGTCGTTCATTTT
CGCTAATAAAAAGGAAACTTAAATCATATTAGCTATTTACTGATAGATATTAATTATCTTAATAATAAAGAATTAAAATAATAATGAAATCTAGTTATTTTCTTCTTCAAAAAGGCTGGA
CAAGACTCAACCTTCATTCTTATTTTCTTATCTTGTCTATTCACTATTGTATATAAGAACAGCTCATTGTTTACATATTTAACATAGTATATTGTTGTCTTAAAGGTCTTACGATTTGAA
TCTACGATCACGATTCCACCTTAGTTTTTGATTTCAGGTAGAATCACGATTTCAACTACCTTGCGTATTTTCTCTCAAGTTCAGCCGTTATTTATTTGTTTCTGTGCCTCATAGTTTGTT
CCTCTAGGTCTAATTCTCATAACATGAGATGAGATTGTCCAGCTAACTCTACTTTGTATCAGTATCTCAATCGCTTGGTACATCTGTTTCTGTCCGTTTATGATGTTGTCTAGATTGCTT
GTCAATATACGAACCTTTAGCTGTGGCTCCATTACTTTTCAGGTACGTGTGAATGGGAAACAGGCTGCACCACTGTACAAATTCCTGAAGACTTACAAAAACGGTTGCATGGGCTCAAGG
ATAAAGTGGAATTTCACCAAGTTCCTCATCAGCAAAGAAGGACAAGTTGTCGGTCGGTTTGGCCCGACCGTCTCCCCTATGTCGATTGAGGTATAATTCTTTCATGTTCTTTTTTCACTG
CAAGATTCTGTCTCTGATTTCATCATATTAACATTGTGCATTGACGTAGACACACATCCAGAAAGAACTGGGAGACCAAGAATGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGGGGTTTCTGGGTCAGTACCGGAGAAATCAATCCACGAATTCGCCGTCAAGGATAGCAGAGGTAAGGATGTGGAGCTCAGCATCTACCAGGGGAAGGTTCTTCTCGTTGTTAACGTC
GCTTCCAAATGCGGTTTCACTGATACAAATTACACCCAGTTGACTGATCTCTATCGCAAATACAAGGACCAAGGTTTTGAAATTCTGGCATTCCCTTGCAACCAATTCTTGAACCAGGAG
CCTGGCACTAGTGAGGAGGCACAAGAGTTTGCTTGTACAAGATACAAGGCTGAGTATCCCATTTTCCAAAAGACACACATCCAGAAAGAACTGGGAGACCAAGAATGA

Retrieve as FASTA