View Redoxidase 12076

Entry information : LuPrx12(Lus10001228|PACid:23148486)

Entry ID	12076
Creation	2013-05-28 (Qiang Li)
Last sequence changes	2013-05-29 (Qiang Li)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2013-05-30 (Qiang LI)

Peroxidase information: LuPrx12(Lus10001228|PACid:23148486)

Name

LuPrx12(Lus10001228|PACid:23148486)

Class

Class III peroxidase [Orthogroup: Prx038]

Taxonomy

Eukaryota Viridiplantae Streptophyta Linaceae Linum

Organism

Linum usitatissimum (flax) [TaxId: 4006 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	LuPrx12 start..stop	S start..stop
LuPrx198	665	0	1..346	1..346
MePrx118	481	4.13e-172	1..342	4..344
PtPrx62	459	9.25e-163	16..342	71..398
PpePrx71	452	1.43e-160	19..342	26..350

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	78258..78542	283	N° 2	77623..77965	341	N° 3	76842..77251	408
complement(join(76842..77251,77623..77965,78258..78542))

Literature and cross-references LuPrx12(Lus10001228|PACid:23148486)

DNA ref.	Phytozome 12: scaffold1649 (78542..76842)

Protein sequence: LuPrx12(Lus10001228|PACid:23148486)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	345 (327)
PWM (Da):	38297.91 (36047.7)
PI (pH):	6.36 (5.47)	Peptide Signal:	cut: 19 range:19-345

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MRTFVFIFAILCFRSALADVNSDENNNNDEAITLQVSTLLDTSSSDNDLLSFAYYQGTCPEAEGIINRKVRDWAKKDSTLAASLMRLHFHDCAVRGCDASILLSNVGSERTAHASKTLRG
FEVIDDIKKELESKCPKTVSCADILTAASRDATVIMGGPYWSIPYGRKDGKVSIEKEAELVPMGRENITTLIQFYQSKGLNVLDLVALSGAHTIGRASCGAIQDRIYYYKGSGESDSSMD
KKYSNYLTRKCRWGSDYVELDAITPDKFDNQYYKNLQRKMGLLRTDQAMYADSRTSPFVNALAYAPPSVFYNQFAASMAKLGNVVEVVGDGEVRTNCNYVNSVHY*

Retrieve as FASTA

Remarks

Complete sequence from genomic. Correct prediction.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGAGGACCTTCGTTTTCATCTTCGCCATTCTTTGCTTCCGATCGGCATTGGCCGATGTCAACTCCGACGAAAACAACAACAACGATGAAGCAATAACACTACAAGTGTCGACGTTGCTC
GACACTTCTTCCTCCGACAATGATTTGCTGTCATTTGCCTACTACCAGGGTACTTGCCCCGAAGCTGAAGGCATTATCAACCGTAAAGTTCGTGATTGGGCCAAAAAGGATTCGACTCTC
GCTGCTAGCCTCATGCGCCTCCACTTTCACGACTGTGCCGTTAGGGTAATTACTAATTAGCACCATATATTGTTTTTACTTCACTTTTTTATGGTGGGTTAAATTCGTCCACTCCTAATT
CTGTCATTATAGTTATTTACAATTGACTTGCATTTATAAATAATATATATTATTACTGGCGTGTTGTTATAATTTATTTTTTTTAAATGTTGGTTTTTAGGTAAATGGTTCACTTTAATT
GTACAATTAGTTTGTCCTAAATATTATTAAAAAAAAATCAATTCCAAATTTCTGCTTATGCCATTGTCTATAATTATTTATATGAACTTATTTGCAGGGGGTTGTGATGCTTCAATTCTA
CTGAGCAACGTAGGAAGCGAGAGGACAGCACATGCCAGCAAGACCCTGCGTGGGTTTGAAGTGATAGACGACATCAAGAAGGAACTCGAAAGCAAGTGCCCCAAAACGGTGTCGTGCGCC
GACATTCTGACCGCAGCCTCACGAGACGCTACCGTTATTATGGGAGGTCCGTACTGGTCAATTCCCTACGGGAGAAAAGACGGGAAAGTTTCTATCGAAAAGGAAGCCGAATTGGTGCCG
ATGGGTCGCGAAAACATTACCACCCTCATCCAGTTCTATCAGTCTAAAGGCCTCAACGTGCTTGATCTTGTTGCTCTCTCAGGTATTAGACATTCAGTTGATTCGATAGTTCTCGTTTAA
TTATTGTTACGGTGCATCAATTTCCTCTATGATTTCTGTCAAATATGTCATGTCACATCAACATACCATGTCATCAAACTAAACAGCAAACTTATGATATGTACGATGTCACATAATGGT
CATTTATTTTTCACGACATGATGACACATTTTTATTGGACTTGGAGTATTATAGTTACCATATTTTCAATTACATGGTACGTGGACATGACATATTTGACAAAAAATCGTTACAAAATCA
TTAGATACTGCTCAATTTGTAGTTTCAAAATTGAGATTCATTAAGCAAAACCAATCCTAACTAGATCAGGATTTGTTGTGTGTACATTTGCAGGAGAGCGCATACAATTGGTCGGGCGAG
CTGCGGGGCGATTCAGGACCGGATCTACTACTACAAAGGAAGTGGAGAATCAGATTCATCGATGGACAAGAAATACTCAAACTATCTTACCAGGAAATGCAGGTGGGGTTCGGACTACGT
TGAGCTTGATGCCATAACGCCAGACAAGTTCGACAACCAGTACTACAAGAATCTACAGAGGAAGATGGGACTCTTGCGGACTGATCAAGCCATGTACGCTGATTCCAGGACTTCCCCCTT
CGTCAACGCGTTGGCTTACGCGCCACCTTCGGTGTTTTACAACCAGTTCGCTGCGTCAATGGCCAAGCTTGGCAATGTAGTTGAGGTTGTGGGTGATGGCGAGGTGCGGACCAACTGCAA
TTATGTCAACTCTGTCCATTACTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA