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Entry information : LuPrx149 (Lus10027984|PACid:23181122)
Entry ID 12096
Creation 2013-05-28 (Qiang Li)
Last sequence changes 2013-05-29 (Qiang Li)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2014-03-18 (Christophe Dunand)
Peroxidase information: LuPrx149 (Lus10027984|PACid:23181122)
Name (synonym) LuPrx149 (Lus10027984|PACid:23181122)
Class Class III peroxidase    [Orthogroup: Prx166]
Taxonomy Eukaryota Viridiplantae Streptophyta Linaceae Linum
Organism Linum usitatissimum (flax)    [TaxId: 4006 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LuPrx149
start..stop		 S start..stop
LuPrx01 682 0 5..355 8..360
LuPrx151 578 0 5..355 8..361
LuPrx42 570 0 14..355 18..373
LuPrx43 518 0 7..355 6..359
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 182238..182450 211 N° 2 183609..183800 190 N° 3 184373..184541 167 N° 4 184638..185128 489
join(182238..182450,183609..183800,184373..184541,184638..185128)


exon

Literature and cross-references LuPrx149 (Lus10027984|PACid:23181122)
Literature Day A, Fénart S, Neutelings G, Hawkins S, Rolando C, Tokarski C. Identification of cell wall proteins in the flax (Linum usitatissimum) stem. Proteomics. 2013 13(5):812-25.
DNA ref. Phytozome 12:   scaffold132 (182238..185128)
Protein sequence: LuPrx149 (Lus10027984|PACid:23181122)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   354 (331)
PWM (Da):   %s   37638.68 (35084.5) Transmb domain:   %s   i7-29o
PI (pH):   %s   4.76 (4.74) Peptide Signal:   %s   cut: 24 range:24-354
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MASYKFVVSSLMAMLLCAGVSYAQQLTPTFYNSTCPTVISIVRTVLQNAAMADPRIGASLNRLHFHDCFVNGCDGSLLLDNSATILSEKQALGNNNSVRGFDVVDQMKTQVEAACPGVVS
CADILAIASEESVVLAGGPSWAVPLGRRDSLTANRSLADDQLPPPFFTVDQLKANFATVGLNTTEDLVALSGAHTFGRARCVGFVGRLYNFNSTGGPDPTINATFLQTLRQICPQNGNGS
VLTNLDRTTVDAFDSNYFTNLQTREGLLQTDQELISTPGSDTIALVNRFAANQTAFFQSFVNSMIRMGNIPPPPGSPSEIRRNCRVVNPASVADTIVITTPAGSVGTDGFASDM*

Retrieve as FASTA  
Remarks Complete sequence from genomic. Experimental evidency of cell wall localization
Warnings: The paralog 100012061 is in an intron of the proteins.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTCATATAAGTTTGTAGTTTCTTCGTTGATGGCGATGCTGCTATGCGCCGGAGTGAGCTACGCGCAGCAGCTTACTCCGACGTTCTACAACTCGACTTGCCCGACTGTAATCAGC
ATCGTCCGTACAGTTCTTCAGAATGCTGCCATGGCCGATCCCAGAATCGGCGCCAGCCTCAACAGGCTTCACTTCCATGATTGCTTTGTTAATATGTAAGTACACTACTACTGCGTACAT
GCTCTCTATATGCTTGTACCATTCGTTACATGTTCTTGTAGTAGTAAAAAAATCCCATAGTAGTACAAGAATCTTTGGTGTTTGTTTACAATGGCGGAACTAGGGGCGGACTTGGTAACT
GTTTCGGACTCTTCCGATTTTTAAAGTGACGAAATTTTATTAAAATTTTATCAAGTACATTTACATATTTCGTCTCGTGTGTTTCCAACTTACTTCATAATTAAAATCCCACCCAGAATT
TCCTACCATTTTCGTTAGTTATATGTTCTTCTGATAGTAGCAAACAAAAATCATGGCATATTGCTTATAAGGTATAACAGGGAATTAGGGGCGAACTTAAGTCACGGTCCAGAATTTTTC
GATTTTACTATTACGAAATCCTTTGTAAGATTTTGTGAATTTGGAGCTTTTGCCCAGTATATTTGCGCATTTCGACTACTGAGCTTTAAAACCTGCTACAAACATAAAATGATGTCGAAA
ATTGTAAACGATCGTTCTGATTCCGCTATTGATTGTTTACGAAAACAAGTATATATATGAACAAAAAAGCAAAAGGATACAAATTAGGGAAGAGACAATGAAAGGAATAGTTGGTAGAAG
TTTCAACCTCCCGTCATAAAGAAGAGGCCAAATGCTGAACTTTCAAACGTTGATATTTCTTTGGTCCATAATAGATATATTACCATGTGGTAATTAATTAAATTGTCGGTATTGGATATA
ATATATGTTTTTGCTTTTATTTTCAAGTACAGAACAAAGTAGTATATTCCATTCCCATAAATTTAATTTATCAATGGTTTTTCAACCCTTCCGATATGGACCGTCCGATTTCAATGATCT
AATGTAATCTAAATTTTATTATAGTTCACTCGTACATTTATAACGATATAAGCAGTTGAGTTTTGAAGAAATTAGACTGAATACGTGTTTGATGTTCTGAGATGGTCCTGAAAAACCATG
CTGTGTTATTTCTTTAATTTACATTTCTTCAAGTCTACATCCGAATTAAATTCCAGCTAGCAATGCATGCCTGGGGACAGGTATTGAATGCTACGTGATAGTGCTTATTATGGTTAGGGG
GTATTGTATGTAATTTTCTTGATCTGAGGGTATGTATGTAATTTACAATGCAGGGATGTGATGGATCTTTGTTGCTGGACAACAGCGCCACCATACTAAGCGAGAAACAAGCTCTTGGTA
ACAACAACTCCGTTAGAGGCTTCGACGTCGTTGACCAAATGAAGACCCAAGTCGAAGCCGCTTGCCCCGGGGTTGTTTCTTGTGCCGATATTCTCGCCATCGCTTCCGAGGAATCCGTTG
TTTTGTGGTATGTAAAATCTTCGTACGTACGTATAAATTCACCTAAAATGGAAAGAAGGGGGAAGAAAACAACGTCTAACTTAATTATAACGATTTAAGTGGTTAAGTCACTTATCATTA
GACTCACTGCTTCCACATTTCGATATGATTCCGAAATCTAGAACCTAATTTTCTAATTTTTTCCCATGTGGAACCTTGTCTTGTCAAAAAAAGCTAATTTATGAAAGATGGAAATAATTG
ACATATAATATGGGTCAATAATAGTAACTAATTATGGTCCCTCGTGTCCCTTTTCTATACTTAGCCAAATTAAATGAATTGACAACTTTAATGTACAACAACCATGAACTACCCTTAGAG
CTAGGGCTTTTCTGATTGTGACTATTCAAAAATTTGTCTCAACAAATATACAAAGTCATATATATAGATGATTATTATTTTTAGTTGGATATGTAGTTAGAATTAATTTATTGCTTTTGA
GATTCGGTATTCGAAACTATATCGAATATGTGAAACTAATGATATGTGATTTAGTAGTTGATTGTTTGACGAATACTATGTAATTTACTAATGGTATAGGCAGGAGGGCCGTCATGGGCA
GTTCCACTAGGAAGGCGAGACAGCTTGACAGCAAACCGGAGTCTAGCAGATGACCAACTTCCTCCTCCATTCTTCACCGTCGATCAGCTCAAAGCTAATTTCGCTACAGTTGGCCTCAAC
ACCACCGAAGACCTCGTTGCACTCTCGGGGGTATCATAATACTATCTAGACCCTATCCATTATATCATCCCATGAATACTGTATTTATATTAATACTAATTAATTCATCGTTATGGGCTT
AATTAGGTGCTCACACATTCGGAAGGGCCCGGTGCGTAGGATTCGTGGGCCGGCTCTACAACTTCAACAGCACGGGCGGCCCAGACCCAACGATCAACGCCACCTTCCTCCAGACACTCC
GCCAGATCTGCCCTCAGAACGGAAACGGCAGCGTTTTGACCAACCTTGACCGGACAACCGTCGACGCTTTCGATTCGAACTACTTCACCAATCTCCAGACCCGTGAAGGACTCCTCCAGA
CTGACCAGGAACTCATCTCCACTCCGGGCTCCGACACTATTGCGCTCGTCAACAGGTTCGCCGCCAACCAGACGGCCTTCTTCCAGAGCTTTGTCAATTCCATGATTAGGATGGGGAACA
TTCCTCCCCCGCCCGGGAGTCCGAGTGAGATTAGGCGGAATTGCAGGGTCGTTAACCCCGCCTCCGTCGCAGATACGATTGTTATTACTACCCCGGCGGGTTCTGTTGGTACGGATGGGT
TTGCGAGTGATATGTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTCATATAAGTTTGTAGTTTCTTCGTTGATGGCGATGCTGCTATGCGCCGGAGTGAGCTACGCGCAGCAGCTTACTCCGACGTTCTACAACTCGACTTGCCCGACTGTAATCAGC
ATCGTCCGTACAGTTCTTCAGAATGCTGCCATGGCCGATCCCAGAATCGGCGCCAGCCTCAACAGGCTTCACTTCCATGATTGCTTTGTTAATGGATGTGATGGATCTTTGTTGCTGGAC
AACAGCGCCACCATACTAAGCGAGAAACAAGCTCTTGGTAACAACAACTCCGTTAGAGGCTTCGACGTCGTTGACCAAATGAAGACCCAAGTCGAAGCCGCTTGCCCCGGGGTTGTTTCT
TGTGCCGATATTCTCGCCATCGCTTCCGAGGAATCCGTTGTTTTGGCAGGAGGGCCGTCATGGGCAGTTCCACTAGGAAGGCGAGACAGCTTGACAGCAAACCGGAGTCTAGCAGATGAC
CAACTTCCTCCTCCATTCTTCACCGTCGATCAGCTCAAAGCTAATTTCGCTACAGTTGGCCTCAACACCACCGAAGACCTCGTTGCACTCTCGGGTGCTCACACATTCGGAAGGGCCCGG
TGCGTAGGATTCGTGGGCCGGCTCTACAACTTCAACAGCACGGGCGGCCCAGACCCAACGATCAACGCCACCTTCCTCCAGACACTCCGCCAGATCTGCCCTCAGAACGGAAACGGCAGC
GTTTTGACCAACCTTGACCGGACAACCGTCGACGCTTTCGATTCGAACTACTTCACCAATCTCCAGACCCGTGAAGGACTCCTCCAGACTGACCAGGAACTCATCTCCACTCCGGGCTCC
GACACTATTGCGCTCGTCAACAGGTTCGCCGCCAACCAGACGGCCTTCTTCCAGAGCTTTGTCAATTCCATGATTAGGATGGGGAACATTCCTCCCCCGCCCGGGAGTCCGAGTGAGATT
AGGCGGAATTGCAGGGTCGTTAACCCCGCCTCCGTCGCAGATACGATTGTTATTACTACCCCGGCGGGTTCTGTTGGTACGGATGGGTTTGCGAGTGATATGTAG

Retrieve as FASTA