Entry information : LuPrxII119(Lus10021932|PACid:23158023)
Entry ID 12190
Creation 2013-05-28 (Qiang Li)
Last sequence changes 2013-05-29 (Qiang Li)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2013-05-30 (Qiang LI)
Peroxidase information: LuPrxII119(Lus10021932|PACid:23158023)
Name LuPrxII119(Lus10021932|PACid:23158023)
Class Atypical 2-Cysteine peroxiredoxin (type II)    [Orthogroup: PrxII001]
Taxonomy Eukaryota Viridiplantae Streptophyta Linaceae Linum
Organism Linum usitatissimum (flax)    [TaxId: 4006 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LuPrxII119
start..stop
S start..stop
CclPrxII05 338 4.62e-119 55..256 24..225
CsPrxII05 336 1.43e-118 55..256 3..204
ThasPrxII03 329 5.08e-116 55..255 1..201
PtPrxII06 327 6.61e-115 55..255 1..203
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '12190' 'complement(join(645936..646041,646132..646226,646314..646472,646686..646715,646807..647184))' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 646807..647184 376 N° 2 646686..646715 28 N° 3 646314..646472 157 N° 4 646132..646226 93
N° 5 645936..646041 104  
complement(join(645936..646041,646132..646226,646314..646472,646686..646715,6468 07..647184))


exon

Literature and cross-references LuPrxII119(Lus10021932|PACid:23158023)
DNA ref. Phytozome 12:   scaffold164 (647184..645936)
Protein sequence: LuPrxII119(Lus10021932|PACid:23158023)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   255 (291)
PWM (Da):   %s   27760.58 (31590.1)  
PI (pH):   %s   10.1 (10.71) Peptide Signal:   %s   cut: 20 range:20-310
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGQAQLISINLVQPSLVSLPHHPPHSQHRRRLKKTSSIYTTTVHKYRNLNQATEMASAVVRRAKASAFKSVVGSLRVAGSSRSYAKVAVGADLVSAAPDVALQKARTWDEGVSSKFSTTP
LKDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKNNADKFKAKGIDSIICVSVNDPYVMNGWAEKLQAKDDLEFYGDFDGKFHKSLELTKDLSGALLGPRSERWSAYVDDGKVKVLNVEEVP
SDFKVSGGEVILGLI*

Retrieve as FASTA  
Remarks Complete sequence from genomic. Incorrect prediction. Extra 5' end.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGCCAGGCCCAATTAATCTCAATCAACCTAGTCCAGCCGTCTCTGGTCTCACTTCCTCATCATCCACCGCACTCTCAACATCGGCGAAGGCTGAAGAAAACTTCGAGCATCTACACA
ACCACAGTCCACAAGTATCGGAATCTTAATCAAGCAACAGAGATGGCATCTGCAGTAGTTAGAAGAGCCAAGGCGTCGGCATTCAAGTCGGTGGTCGGCAGTCTACGAGTGGCTGGATCG
TCGAGATCCTACGCCAAGGTTGCCGTTGGGGCTGATCTAGTATCGGCCGCCCCCGATGTCGCCCTCCAGAAAGCTCGCACCTGGGACGAAGGCGTCTCTTCCAAATTCTCCACTACCCCT
CTCAAAGACATTTTCAAG
GTCCAAATCCACTGCCCATTTTGTACTTAATTTTTTCTACATTCGACAACTTTTGTTTTTTCCACTGATTCTTGTATTTTTTCTGTGCCAGGGGGCAAGAAA
GTTGTCATCTTTGGTCTTCCA
GTAAGTCTCTCTACCTGTCAAATTGTTGCTTTGGCTGCTCTTTGCTGTGATTGATTTATCATATTTCTGTCCTGTACGGAAATTCGATGTGAATTTCAT
TTCGAAATGTCTGGCAAGATTATTGATGTCAGAAACTCCTGAAACGAGCCAGCTCATTCAAAAGTTCCAATGGCTTTTGGTAATGTCTTGTTTGGCCTTTGCTTTTATCTCCAGGGGGTG
CATACACAGGTGTTTGCTCGCAGCAGCATGTCCCTAGTTACAAGAACAACGCAGATAAGTTCAAGGCTAAAGGAATTGATTCGATCATTTGCGTGTCGGTTAACGACCCTTATGTGATGA
ATGGTTGGGCAGAGAAACTTCAAGCTAAAGATGAT
GTAAGTTAGTTAACAAAAGGATGAGCCTTTTGCTTCTCTAGTAGATTATCTATGACTTTACACGTGCTCTTTCGCTCCCCGTCTC
AGCTCTCGAATTCTACGGAGACTTTGATGGGAAGTTCCACAAGAGCTTGGAGCTAACTAAGGATCTCTCTGGTGCTTTGCTTGGACCTCGCTCTGAAAGGTATATATACTATTGCATCTG
TAATATCCAAGACATGTCTTATACTCTATCCTTTTCTTACTGTGATCATTGTGGATTTTGCCTGTGTAGATATGGTCTGCTTATGTTGATGATGGGAAAGTTAAGGTCCTTAATGTCGAG
GAAGTCCCGTCGGATTTCAAGGTTTCTGGCGGTGAGGTTATTTTGGGACTGATATGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGCCAGGCCCAATTAATCTCAATCAACCTAGTCCAGCCGTCTCTGGTCTCACTTCCTCATCATCCACCGCACTCTCAACATCGGCGAAGGCTGAAGAAAACTTCGAGCATCTACACA
ACCACAGTCCACAAGTATCGGAATCTTAATCAAGCAACAGAGATGGCATCTGCAGTAGTTAGAAGAGCCAAGGCGTCGGCATTCAAGTCGGTGGTCGGCAGTCTACGAGTGGCTGGATCG
TCGAGATCCTACGCCAAGGTTGCCGTTGGGGCTGATCTAGTATCGGCCGCCCCCGATGTCGCCCTCCAGAAAGCTCGCACCTGGGACGAAGGCGTCTCTTCCAAATTCTCCACTACCCCT
CTCAAAGACATTTTCAAG
GGCAAGAAAGTTGTCATCTTTGGTCTTCCAGGTGCATACACAGGTGTTTGCTCGCAGCAGCATGTCCCTAGTTACAAGAACAACGCAGATAAGTTCAAGGCT
AAAGGAATTGATTCGATCATTTGCGTGTCGGTTAACGACCCTTATGTGATGAATGGTTGGGCAGAGAAACTTCAAGCTAAAGATGAT
CTCGAATTCTACGGAGACTTTGATGGGAAGTTC
CACAAGAGCTTGGAGCTAACTAAGGATCTCTCTGGTGCTTTGCTTGGACCTCGCTCTGAAAG
ATGGTCTGCTTATGTTGATGATGGGAAAGTTAAGGTCCTTAATGTCGAGGAAGTCCCG
TCGGATTTCAAGGTTTCTGGCGGTGAGGTTATTTTGGGACTGATATGA

Retrieve as FASTA