Entry information : ParcLiP04
Entry ID 12292
Creation 2013-05-30 (Nizar Fawal)
Last sequence changes 2018-01-18 (Catherine Mathe)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2018-01-18 (Catherine Mathe)
Peroxidase information: ParcLiP04
Name ParcLiP04
Class Lignin peroxidase    [Orthogroup: LiP004]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Polyporaceae Polyporus
Organism Polyporus arcularius    [TaxId: 5639 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value ParcLiP04
start..stop
S start..stop
ParcLiP02 694 0 1..366 1..366
ParcLiP05 678 0 1..366 1..366
ParcLiP01 660 0 1..364 1..364
ParcLiP03 612 0 1..364 1..364
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '12292' 'complement(join(24997..25009,25062..25126,25180..25676,25730..25851,25901..26240,26300..26360))' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 26300..26360 59 N° 2 25901..26240 338 N° 3 25730..25851 120 N° 4 25180..25676 495
N° 5 25062..25126 63 N° 6 24997..25009 11  
complement(join(24997..25009,25062..25126,25180..25676,25730..25851,25901..26240 ,26300..26360))


exon

Literature and cross-references ParcLiP04
DNA ref. JGI genome:   scaffold_193 (26360..24997)
Cluster/Prediction ref. JGI gene:   599508
Protein sequence: ParcLiP04
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   365 (344)
PWM (Da):   %s   38910.49 (36725.2)  
PI (pH):   %s   4.42 (4.34) Peptide Signal:   %s   cut: 22 range:22-365
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGFKALLSTLAVVATLKVASAALTRRVACPDGKNTATNAACCALFPIRDDIVENLFHNQCAEEAHESLRLTFHDAVAFSPAAEARGEFAGGGADGSIVLFSEIETAFHANGGTDEIVALQ
KPFIAKHNISAADFIQFAGAVALAQCPGAPQLEFMLGRKDATRAAPDGLVPEPFDTIDDILARLLDVGFQDFEVVWLLSAHTVAAADLVDPTIPRTPFDSTPEVFDTQFFIETQLRGLKF
AGQGGIHGEVNSPLTGEMRLQSDHLLARDSRTACEWQSFTNDQEKFAETFPDVMGRLALLGVDQSTLIDCSEVIPIAPPLPASSRPHFPAGKTHADIEQACADTPFPTFPTDPGPATKVA
PVPNL*

Retrieve as FASTA  
Remarks complete sequence from genomics (5 introns)
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGTTTCAAGGCTCTCCTCTCTACCCTCGCCGTCGTTGCAACTCTCAAGGTCGCCAGCGGTGAGTCTTTCGCGGGCTGCTGCCACTTTCCTCAATGCTGACTGCTAGCTGTCCGGTAG
CTCTGCGCTTACGCGCCGTGTTGCATGCCCGGATGGGAAGAACACCGCGACGAACGCGGCGTGCTGCGCTCTGTTCCCTATCCGCGACGACATCGTCGAGAACCTCTTCCACAACCAGTG
CGCAGAGGAGGCCCACGAGTCCCTCCGTCTGACCTTCCACGACGCCGTCGCGTTCTCGCCCGCTGCCGAAGCCCGTGGCGAGTTCGCTGGCGGAGGCGCCGACGGCTCCATCGTGCTCTT
CTCTGAGATCGAGACGGCGTTCCATGCAAACGGGGGCACCGACGAGATCGTCGCGCTGCAGAAGCCCTTCATCGCCAAGCACAACATCTCGGCCGCTGACTT
GTATGCCATCCTTGTCCT
CTGTCCGTGCAGGTGCTTACGTGCTTCGTAGCACATTCAATTTGCGGGCGCCGTCGCGCTCGCTCAGTGCCCTGGTGCACCCCAGCTCGAGTTCATGCTCGGCCGTAAGGATGCTACGCG
GGCTGCCCCTGACGGTCTCGTCCCCGAGCCCTTCG
GTGAGTAGCCACGTCGCTCTGTGACTAGTACCCAAAGCTGAGTCGATCGTTAGACACACTATCGATGACATCCTGGCCCGTCTGC
TCGACGTCGGGTTCCAGGACTTCGAGGTCGTATGGTTGCTCTCCGCCCACACAGTCGCCGCCGCCGACCTGGTCGACCCGACGATCCCGCGCACGCCCTTCGACTCGACGCCGGAGGTCT
TCGACACCCAGTTCTTCATCGAGACCCAGCTCCGTGGTCTGAAGTTCGCCGGCCAGGGCGGTATCCACGGCGAGGTCAACTCGCCGCTCACCGGCGAGATGCGCCTCCAGTCGGACCACC
TCCTCGCTCGCGACTCGCGCACGGCCTGCGAGTGGCAGTCGTTCACAAACGACCAGGAGAAGTTCGCGGAGACGTTCCCGGATGTTATGGGCCGCCTTGCGCTCCTCGGTGTTGATCAGA
GCACGCTCATCGACTGCTCGGAGGTCATTCCGATCGCCCCGCCCCTGCCCGCCAGCTCTCGCCCGCACTTCCCCGCTGGCAAGACCCACGCCGACATCGAGCAGGCT
GTAAGTGGACATG
CATGTTGCAATGTTGCGCATCGTGCTGACCTTGTTTATAGTGTGCGCCGACACCCCGTTCCCGACCTTCCCCACTGACCCTGGTCCGGCCACCAAGGTCGCCCCCGTGTAAGCATCTGAT
GTCCGTCCGTTTTTCGCTGCTCTAACACGCTCGGTTCAGTCTCCCAACCTATAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGTTTCAAGGCTCTCCTCTCTACCCTCGCCGTCGTTGCAACTCTCAAGGTCGCCAGCGCTGCGCTTACGCGCCGTGTTGCATGCCCGGATGGGAAGAACACCGCGACGAACGCGGCG
TGCTGCGCTCTGTTCCCTATCCGCGACGACATCGTCGAGAACCTCTTCCACAACCAGTGCGCAGAGGAGGCCCACGAGTCCCTCCGTCTGACCTTCCACGACGCCGTCGCGTTCTCGCCC
GCTGCCGAAGCCCGTGGCGAGTTCGCTGGCGGAGGCGCCGACGGCTCCATCGTGCTCTTCTCTGAGATCGAGACGGCGTTCCATGCAAACGGGGGCACCGACGAGATCGTCGCGCTGCAG
AAGCCCTTCATCGCCAAGCACAACATCTCGGCCGCTGACTT
CATTCAATTTGCGGGCGCCGTCGCGCTCGCTCAGTGCCCTGGTGCACCCCAGCTCGAGTTCATGCTCGGCCGTAAGGAT
GCTACGCGGGCTGCCCCTGACGGTCTCGTCCCCGAGCCCTTCG
ACACTATCGATGACATCCTGGCCCGTCTGCTCGACGTCGGGTTCCAGGACTTCGAGGTCGTATGGTTGCTCTCCGCC
CACACAGTCGCCGCCGCCGACCTGGTCGACCCGACGATCCCGCGCACGCCCTTCGACTCGACGCCGGAGGTCTTCGACACCCAGTTCTTCATCGAGACCCAGCTCCGTGGTCTGAAGTTC
GCCGGCCAGGGCGGTATCCACGGCGAGGTCAACTCGCCGCTCACCGGCGAGATGCGCCTCCAGTCGGACCACCTCCTCGCTCGCGACTCGCGCACGGCCTGCGAGTGGCAGTCGTTCACA
AACGACCAGGAGAAGTTCGCGGAGACGTTCCCGGATGTTATGGGCCGCCTTGCGCTCCTCGGTGTTGATCAGAGCACGCTCATCGACTGCTCGGAGGTCATTCCGATCGCCCCGCCCCTG
CCCGCCAGCTCTCGCCCGCACTTCCCCGCTGGCAAGACCCACGCCGACATCGAGCAGGCT
TGCGCCGACACCCCGTTCCCGACCTTCCCCACTGACCCTGGTCCGGCCACCAAGGTCGCC
CCCGT
TCCCAACCTATAA

Retrieve as FASTA