View Redoxidase 12893

Entry information : CrubPrx12 (Carubv10020541m.g)

Entry ID	12893
Creation	2014-03-17 (Maxime Neel)
Last sequence changes	2014-03-17 (Maxime Neel)
Sequence status	complete
Reviewer	Maxime Neel
Last annotation changes	2014-03-18 (Maxime Neel)

Peroxidase information: CrubPrx12 (Carubv10020541m.g)

Name (synonym)

CrubPrx12 (Carubv10020541m.g)

Class

Class III peroxidase [Orthogroup: Prx005]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Capsella

Organism

Capsella rubella [TaxId: 81985 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	CrubPrx12 start..stop	S start..stop
AhalPrx49	717	0	1..359	1..359
BstrPrx46	706	0	1..359	1..361
AlyPrx12	705	0	1..355	1..355
AtPrx12	704	0	1..358	1..358

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '12893' 'join(10492960..10493226,10494285..10494479,10494625..10495239)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	10492960..10493226	265	N° 2	10494285..10494479	193	N° 3	10494625..10495239	613
join(10492960..10493226,10494285..10494479,10494625..10495239)

Literature and cross-references CrubPrx12 (Carubv10020541m.g)

DNA ref.	Phytozome 12: scaffold_2 (10492960..10495239)

Protein sequence: CrubPrx12 (Carubv10020541m.g)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	358 (327)
PWM (Da):	39322.13 (35883.3)	Transmb domain:	o5-27i
PI (pH):	8.39 (8.21)	Peptide Signal:	cut: 32 range:32-358

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAKGYSTRVLTFLMLISLMAVTLNLVSTAEAKKRRRDAPIVQGLSWNFYQKACPKVENIIRKELKKVFKRDIGLAAAILRIHFHDCFVQGCEASVLLAGSASGPGEQSSIPNLTLRQQAF
VVIDNLRALVQKRCGQVVSCSDVLALAARDSVVLSGGPDYAVPLGRRDSLAFASQETTLNNLPPPFANASQLIADFANRNLNITDLVALSGGHTIGIAHCPSFTDRLYPNQDPTMNKAFA
NNLKRTCPTANSSNTQVNDIRSPDVFDNKYYVDLMNRQGLFTSDQDLFVDKRTRGIVESYAIDQQLFFDHFTVAMIKMGQMSVLTGTQGEIRSNCSARNTPSFMSVLEEGIEEAISII*

Retrieve as FASTA

Remarks

Complete sequence from genomic (introns 1 and 2).

Promoter►
Send to BLAST
Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

AATGACAATT GTCACGAGAC AAACATTGCA GCTCTTTTAA GAATAATTAG GTGGTGTGAC AAAAATTGAA TAGAAGACAT TAAGTGAGTA GCAATAATGC AACTTAAAAA AATATATCTC GGCCACCCTG TTCAATTTCA AGGTTTGACA TGGATAGGGG CCAAAGTATA ATTGTATGAA TCTCTATGAG AGGAGATTTA TGTATTGATC ACATATATAT ATATATATGG TATGTGTGTG ATAAGATTGT ATCATTTTAG CTCGATGAAG GATGTCCGAT GCATAATTTT GCTGATTAAG AAATGTACCT TTCGGATTGC GCAGGATAGA TATACGGAGT GATCTTAGAT CTGTCATGGC AAAGGCAGAA TTAATCAAGG GTGGAGATCT AATCAAGGAG AGCCGGCGAG GATGCGGTGA GAGCAATGTC ATCAACATAA AGAAGCAAAT ACGCAATATC CCTGCCACGA GAAAAAACAA ACAGCTACGA GGCCGAAACA CTTTGAATAA AACCAAGTCG CTTAGCAAAC ATGGAGAACC TTGTATACCA TGTGTGTGGT GCTTGTTTTC AATCACGTGC TCGCTTTGCA TTAGATTTTC AAAACTTGGA GAAAGTCTGT TCGCTCTTTT GGGTTGATTT CAAATACCCC ACCATTTCTG CTAAAGTCGC AATCTTCATA AACCATTAAT TTACGATCCA CTGACCCAAA CGAATTTGCC AACACAAACA CGCGTGCTTG TCTTGAATTT CGTCCACTGT CAATTGTCAT GCGAGTTTCT TTCTACAAAA AAAAATCCAC ATCGATACTT TCTTTACAGA AATGGATCAA ATCACTTTTT GGGACTCTAA TTAGACCAAT AACTAGTAAA CACAACTTAA TATGAAATTT TAGATTACTT TCGATATATA GTTGTCTGTC GCTAGAGGCT AATTAATAAT GCTATCAGAC TATCATACAC CACAATATAT AGAGTATGTA CAAGTGTACT ATCCAAGACC CATAGATGGG CTATGATATT ATTTTGACGG TGATCTCATT TATGACTTTT AGATTCTTCT ACACTAGGCT TTTTGACTTT TGTTGGTTGT TGCTGCGGAA CGCAGTTTCT CGTCATATTA TAATCTCCGG TCTCCGCGTC CATAACAATC CAAATCGCAT GCACGCGACT AATAAATAAC TCGTGTATAT ATATTATACT CCAAAACTAC TTCTAATTGT CAAATTAATA TAGCACAACA TATATCATAC TATGCTTAGT ATTTTTCTTA AGAATATTTC TTTTTCATAT ATAGAAAGTT CCGGGCATTA TTTTCATAGT AGCGAAGACG TAGTATTTTG ATCATGCTTA GGGAAGGACC GTAAAGAATC CTCTCTCTAA ACATAGAACA TGGAATTTGA GTTCGGGCTT TATGATAAAT AGCACTAAAA CAATTCCTTG AACAGGTTTA AGTAATCGAA AATTGTACAC GGAAAAACAA TCAACGTTTT CAATTTTACT CTAATTAATA GTAGTACTAT TTATATCCAT TGTCAATAGT CAAGTTGATA TAGTAATATA AACCCCACAC GTATTTATCT CCTTTATCTT TAGGAAAAAA GAAAATATTT ATATGCTTTA ATATTTGATC CAAAAACTAC AAAGTCTATG TATATATTTT TTTTGGTCAT CATATCAAAA ATGGGATTGT GTTAAATAAT TGACACGTTA ATTACATACG GGGGACGAGA CCCGTTCCTA CGATCAAAAC ACAAACTTTC CTCGCAGTTT TGTTTTTTTT TTTGTTTTTT TGGTCTTTTG GAAATAATAA AAAGGGAAAA TTTGCGTTTT ATTAAATATA TATGGAAGGA GGAAGCTTTA AACCTAAATA AGCTAAACAA GGACCACATT TGCCTATAAA AACAAAGTCC ATATAGTATT
TCCCAAGAAC AAGAAAAAGC AGAGAAGATA GAGAAAGAGA GAGTGAGAGG GTTTGATTGA GAAACAAACA CCAAAAAAAA

Retrieve as FASTA

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCAAAGGGTTATTCGACACGTGTGCTCACGTTTCTGATGTTGATCTCGCTAATGGCGGTGACACTGAATCTTGTGTCTACTGCGGAGGCAAAGAAGCGGAGGAGAGATGCCCCTATA
GTGCAAGGTCTCTCATGGAACTTTTACCAGAAAGCATGTCCCAAAGTCGAAAACATTATCAGAAAAGAGCTCAAGAAAGTCTTCAAGAGAGATATTGGTTTGGCCGCAGCCATCCTTCGT
ATACATTTCCATGATTGCTTCGTTCAGAGGTTCCATATCTTTCTTCTTCTTCCTTTTGTTTTTTTTTTTCTTTGTATTAAAACCAAAGAAAACTTAATCTGATTCTTTAAGCCTACTCGA
AACGGTTCTACTTATGTAATCTGATTCTTTCTTTTCGAAAAAAGGAATCTCGGTTTTAGAGTACTGTATAACTCATTATACCCACACAATAAAAAAAAAAAAATTCGGGTTGTGGTACTT
TTGTTTTTAAAATCCGACCAAAATAACCTTAAAGAAAAACACAACATCGCCTCGAAATTCTCAGGAACAAGATAAAGAGTTGTCCGCTTCTTACTTTCACAATTTTTGTTTTTTTCAAAC
ATAAAAAAATATGACCAAACATACCATTGAATAGTGTTGTACTGTTGTTTAATACTGCTACAAACTATTACATTAATATTACAATATAAGTATAGTTTCTACCCTTTGCCCAAAAAAAAA
AGGTATAGTTTCTACCCCAAAAAATAAAAATAATTAAAATAATACATTACATGCAATAGGATCGATAGACCGATAGAGAGAGTTGAAGATAGAGGGACATGTCGCATTAATACTATTCAC
CGGCTTTCCGTAGGTTAGTTGGATCTCAGTTATGGAACATGCATATATATCTTAAACAATTACATTTCTAACTATTGATAAGAAAAACAAAGAAGTTATGATGAGAAAAAATATATTCAA
GATTAGAATAGCATGTACAACAAATTCAGCACATGCATGTATGTGAATTATATAGTTGAATATGACTATTAATTTGATGTATTTAAATTTCTGTTGAAAAATATCTGATATTCCTCTTTA
GCCAAATACTAAACAGAATTTGTTTTGCACTTTGCTGCAATACTATTCAGACATTTACACCTTTATAGTGTTACCTTCAAATTGCAGACTTATATATACTTCAAACATTACTTAAAATTT
GTTAATAATTATGGAAAGTGGCATAGTTTTGATCAGATCAGATAAATATATAATATTTAGGAGAAAAGATTTCTGAATGTATTTATATTATTTATGTTTGGTAAAATAAATGTCATGAGA
AAAACAGGGATGTGAAGCATCAGTGCTGCTAGCTGGATCAGCTAGTGGACCAGGAGAACAATCATCGATCCCTAACCTGACGCTCCGTCAACAAGCCTTTGTCGTCATCGATAATCTTCG
TGCCCTTGTCCAGAAAAGGTGCGGTCAAGTCGTCTCTTGCTCTGACGTCCTCGCTCTCGCCGCTCGCGACTCCGTCGTCCTTTTGTAACCAACTCTCTCTTTTTCTTTCCATTACTCAAT
CACATTGCTTTCAACTTAATACTCGCGGTCACGCTAATACAAACTATATATTAGACTACAAGTCTCACTAATTCTAATTGATAGTTTTTTTTTGGGTGTGTCAATGTAGTCAGGAGGGCC
AGACTATGCTGTGCCACTTGGGCGACGCGACTCACTAGCATTCGCGAGCCAGGAGACCACATTAAATAACTTACCACCACCCTTCGCCAACGCGAGTCAGCTCATAGCCGACTTCGCCAA
CAGAAACCTTAACATAACCGACTTAGTGGCACTTTCTGGTGGTCACACCATCGGAATCGCGCATTGTCCTTCTTTCACAGACCGACTCTACCCGAACCAAGACCCAACCATGAACAAAGC
CTTCGCCAACAACCTCAAACGCACTTGTCCCACCGCGAACTCGAGCAACACCCAAGTGAATGACATAAGGAGTCCTGACGTGTTCGACAACAAGTACTACGTTGATCTCATGAACCGACA
AGGGCTATTCACTTCCGACCAAGATCTTTTCGTAGACAAGAGGACACGTGGCATCGTGGAGAGTTATGCGATCGACCAGCAGCTGTTTTTCGATCATTTCACGGTAGCGATGATCAAGAT
GGGTCAGATGAGTGTCTTGACGGGAACACAAGGAGAAATTCGTTCCAACTGCTCAGCAAGAAACACCCCAAGTTTCATGTCCGTCTTGGAAGAAGGCATTGAGGAAGCTATTTCCATTAT
ATAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA

cDNA►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

CCACATTTGC CTATAAAAAC AAAGTCCATA TAGTATTTCC CAAGAACAAG AAAAAGCAGA GAAGATAGAG AAAGAGAGAG TGAGAGGGTT TGATTGAGAA ACAAACACCA AAAAAAAATG GCAAAGGGTT ATTCGACACG TGTGCTCACG TTTCTGATGT TGATCTCGCT AATGGCGGTG ACACTGAATC TTGTGTCTAC TGCGGAGGCA AAGAAGCGGA GGAGAGATGC CCCTATAGTG CAAGGTCTCT CATGGAACTT TTACCAGAAA GCATGTCCCA AAGTCGAAAA CATTATCAGA AAAGAGCTCA AGAAAGTCTT CAAGAGAGAT ATTGGTTTGG CCGCAGCCAT CCTTCGTATA CATTTCCATG ATTGCTTCGT TCAGGGATGT GAAGCATCAG TGCTGCTAGC TGGATCAGCT AGTGGACCAG GAGAACAATC ATCGATCCCT AACCTGACGC TCCGTCAACA AGCCTTTGTC GTCATCGATA ATCTTCGTGC CCTTGTCCAG AAAAGGTGCG GTCAAGTCGT CTCTTGCTCT GACGTCCTCG CTCTCGCCGC TCGCGACTCC GTCGTCCTTT CAGGAGGGCC AGACTATGCT GTGCCACTTG GGCGACGCGA CTCACTAGCA TTCGCGAGCC AGGAGACCAC ATTAAATAAC TTACCACCAC CCTTCGCCAA CGCGAGTCAG CTCATAGCCG ACTTCGCCAA CAGAAACCTT AACATAACCG ACTTAGTGGC ACTTTCTGGT GGTCACACCA TCGGAATCGC GCATTGTCCT TCTTTCACAG ACCGACTCTA CCCGAACCAA GACCCAACCA TGAACAAAGC CTTCGCCAAC AACCTCAAAC GCACTTGTCC CACCGCGAAC TCGAGCAACA CCCAAGTGAA TGACATAAGG AGTCCTGACG TGTTCGACAA CAAGTACTAC GTTGATCTCA TGAACCGACA AGGGCTATTC ACTTCCGACC AAGATCTTTT CGTAGACAAG AGGACACGTG GCATCGTGGA GAGTTATGCG ATCGACCAGC AGCTGTTTTT CGATCATTTC ACGGTAGCGA TGATCAAGAT GGGTCAGATG AGTGTCTTGA CGGGAACACA AGGAGAAATT CGTTCCAACT GCTCAGCAAG AAACACCCCA AGTTTCATGT CCGTCTTGGA AGAAGGCATT GAGGAAGCTA TTTCCATTAT ATAAATAACC ATAAATCTTC ACCTTTCTTC TTAACTCTGT TTTTATTTCG TTCACGCACT TGTGCATGGT TTGTCGAATG CTTAAAACTA TCTGATAAAT AAGAGCATTG CTTCACTTAT AACTATGTTT
TTTAGTTCAC GCACTTGTGG TTTGACCAAT GTTTAAGATT TAAGAATACC ATCTTATGAA TAAACTAACG TATTAGTTTC TGC

Retrieve as FASTA