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Entry information : CbraAPx02 (g11895.t1 / CHBRA179g00020)
Entry ID 12956
Creation 2014-09-09 (Christophe Dunand)
Last sequence changes 2015-12-31 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2016-01-04 (Achraf Jemmat)
Peroxidase information: CbraAPx02 (g11895.t1 / CHBRA179g00020)
Name (synonym) CbraAPx02 (g11895.t1 / CHBRA179g00020)
Class Ascorbate peroxidase    [Orthogroup: APx2003]
Taxonomy Eukaryota Viridiplantae Streptophyta Charophyceae Characeae Chara
Organism Chara braunii    [TaxId: 69332 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CbraAPx02
start..stop		 S start..stop
NhyAPx06 400 2.02e-143 1..243 1..245
NhyAPx03 399 6.54e-143 1..243 1..245
McAPx01 363 2.2e-128 3..245 4..246
AfiliAPx01 352 8.28e-124 1..244 1..244
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 38601..39341 739  
join(38601..39341)


exon

Literature and cross-references CbraAPx02 (g11895.t1 / CHBRA179g00020)
Protein sequence: CbraAPx02 (g11895.t1 / CHBRA179g00020)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   246 (294)
PWM (Da):   %s   27090.54 (30966.0)  
PI (pH):   %s   5.61 (6.65) Peptide Signal:   %s   cut: 26 range:26-319
Sequence
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Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MGPPTVDQAY SDAVEAARAD LGAFIKEKNC APIMVRLGWH DAGTYCAKSK TGGANGSIRH TEENSHGANM GLTIALKWIE EFKAKYPILS YADLIQLGGY AALDVTGGPK IEFTPGRQDC  DKCTEDGRLP DATKGPDHLR DVFHRMGITD QEIVLLSGAH TLGRCHKERS GFEGPWTTKP LVFDNSYFTE LLTGEKEGLL QLPTDKALIE DPVFKPWVEL YAKDQDKFFE DYARAHKKLS 
ELGFVY 

Retrieve as FASTA  
Remarks Complete sequence from RNA seq and genomic (scaffold_179, no intron).
DNA ►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGACCAC CTACAGTCGA CCAGGCTTAC TCCGACGCCG TGGAGGCTGC CAGGGCGGAC TTGGGCGCCT TCATCAAGGA GAAGAACTGC GCGCCAATTA TGGTCCGCCT GGGCTGGCAC  GACGCCGGGA CCTACTGTGC GAAGTCGAAG ACCGGTGGTG CTAATGGCTC CATCCGCCAT ACCGAAGAGA ATTCCCATGG GGCCAACATG GGTCTGACCA TTGCCTTGAA GTGGATAGAG  GAGTTTAAGG CCAAGTACCC AATTTTGTCG TATGCGGATC TCATTCAGCT GGGCGGCTAT GCAGCGCTGG ACGTGACAGG CGGCCCGAAG ATCGAGTTCA CCCCGGGTCG CCAGGATTGC  GACAAGTGCA CTGAAGATGG CCGGCTGCCC GATGCCACGA AGGGTCCCGA CCATCTGCGC GATGTCTTCC ATCGCATGGG CATCACCGAT CAGGAGATTG TCCTCCTCTC CGGTGCGCAT  ACGTTGGGCA GGTGTCACAA GGAGCGGTCG GGATTCGAGG GGCCTTGGAC CACTAAACCC CTGGTTTTCG ATAACAGCTA CTTCACTGAG CTCCTGACTG GCGAGAAGGA GGGGCTTCTT  CAGCTACCAA CTGATAAGGC TTTGATTGAA GACCCCGTCT TCAAACCCTG GGTGGAGTTG TACGCCAAGG ATCAGGACAA ATTCTTTGAA GATTACGCGC GTGCGCACAA GAAGCTGTCG 
GAGCTCGGGT TCGTGTACTG A 

Retrieve as FASTA  
CDS►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGACCAC CTACAGTCGA CCAGGCTTAC TCCGACGCCG TGGAGGCTGC CAGGGCGGAC TTGGGCGCCT TCATCAAGGA GAAGAACTGC GCGCCAATTA TGGTCCGCCT GGGCTGGCAC  GACGCCGGGA CCTACTGTGC GAAGTCGAAG ACCGGTGGTG CTAATGGCTC CATCCGCCAT ACCGAAGAGA ATTCCCATGG GGCCAACATG GGTCTGACCA TTGCCTTGAA GTGGATAGAG  GAGTTTAAGG CCAAGTACCC AATTTTGTCG TATGCGGATC TCATTCAGCT GGGCGGCTAT GCAGCGCTGG ACGTGACAGG CGGCCCGAAG ATCGAGTTCA CCCCGGGTCG CCAGGATTGC  GACAAGTGCA CTGAAGATGG CCGGCTGCCC GATGCCACGA AGGGTCCCGA CCATCTGCGC GATGTCTTCC ATCGCATGGG CATCACCGAT CAGGAGATTG TCCTCCTCTC CGGTGCGCAT  ACGTTGGGCA GGTGTCACAA GGAGCGGTCG GGATTCGAGG GGCCTTGGAC CACTAAACCC CTGGTTTTCG ATAACAGCTA CTTCACTGAG CTCCTGACTG GCGAGAAGGA GGGGCTTCTT  CAGCTACCAA CTGATAAGGC TTTGATTGAA GACCCCGTCT TCAAACCCTG GGTGGAGTTG TACGCCAAGG ATCAGGACAA ATTCTTTGAA GATTACGCGC GTGCGCACAA GAAGCTGTCG 
GAGCTCGGGT TCGTGTACTG A 

Retrieve as FASTA