View Redoxidase 13211

Entry information : SpolPrx11 (Spipo18G0026800)

Entry ID	13211
Creation	2015-06-09 (Christophe Dunand)
Last sequence changes	2015-06-09 (Christophe Dunand)
Sequence status	complete
Reviewer	Catherine Mathe
Last annotation changes	2016-02-26 (Catherine Mathe)

Peroxidase information: SpolPrx11 (Spipo18G0026800)

Name (synonym)

SpolPrx11 (Spipo18G0026800)

Class

Class III peroxidase [Orthogroup: Prx357]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela

Organism

Spirodela polyrhiza (great duckweed) [TaxId: 29656 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SpolPrx11 start..stop	S start..stop
SpolPrx15	459	3.17e-164	1..320	1..317
LminPrx102	438	6.03e-156	1..319	1..319
LminPrx101	434	1.05e-154	1..319	1..319
LminPrx29	434	2.75e-154	1..319	1..319

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '13211' 'join(2098060..2098272,2098346..2098534,2098633..2099190)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	2098060..2098272	211	N° 2	2098346..2098534	187	N° 3	2098633..2099190	556
join(2098060..2098272,2098346..2098534,2098633..2099190)

Literature and cross-references SpolPrx11 (Spipo18G0026800)

DNA ref.	Phytozome 12: pseudo18 (2098060..2099190)
Cluster/Prediction ref.	Phytozome Gene 12: 31518581

Protein sequence: SpolPrx11 (Spipo18G0026800)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	319 (295)
PWM (Da):	33827.93 (31222.6)	Transmb domain:	i5-27o
PI (pH):	4.76 (4.65)	Peptide Signal:	cut: 25 range:25-319

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAATCSVSLGTLLVLLLYVFTSHAQLTANFYSSSCPNLETIVQSATQTAVTNNPRTPASLLRLFFHDCFVQGCDGSVLLNDTPTFTGEQSARANRELKALDVIEDIKSAVEASCNGVVSC
ADILALATRDGVVLSGGPSWTVPLGRRDATTASLNEANINLPGPSSSLSALITRFASKGLSLQELVALSGAHTVGFAPCRAFRNRIYNDANIDLPFANSLKAICPPSSPNGDENLSPIDI
STPTAFDNAYYRNLLSLRGLLHSDQELFNNGSADSIVQSYADSSSIFFTDFATAMVNLGSIDPLTGPNGEIRRVCSRVN*

Retrieve as FASTA

Remarks

Promoter►
Send to BLAST
Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

AACCTACGAG CAGCAATCTC CATTTTAGTC GTAACTCTCT CTCTCTCCTC CCTCCTACAG GGGGGAGGAG GTTGCATAGC GAGAGAGGAC GGATGAGGGG AGACTACCAT TTGCACCAAC CGAATTTCAA ACGCAGGAAA GGGATTTTCT TTGACCTCTT GTAAGGAGGC ATCATATGCT AACCCTGTAT GTACGTCGGC ATTATCAGAT CTTTGGATAT CAGCGATGAA GATGTTCATC GTTAAGAACT TGGATTGATC TTAGTGGACC ATACCGGACT TTGTGCCACG CTTGAAGATC ACATTTTCTG AAATGACGTT TTCCCTTTAA GAAATCTCGA TCTTTATCGT CAGAGGTTGC TCTTCCCGTT CGATCGCCGC AAAGCTGACT TACCTGGAAG GCTTGGCGAC ACGCAAGACC TACCCATCGG GAATGTCAAT ATCATTCCAA CTACTAGTAC TCCCCAAGAA CTAAATGATC GACAGAGATC TGGAAACGTG GATGAGCAAG CATTTGACCA GGAAGATGGT CAAAGATCCT GACTTTTCCA CGCGGGGGGT CCCCACAATT AATTATGCGT GGTCAGCAGT TCGGGTGTCT CTTAATCAAT CACGTTCCCC AGACCTTTCG AAGCCTGGCA GGCCTGTTAA TTATATACAT TATCCACTGG GGAGTGGAGG GAGATCTTCA CCAATGCAAA GAAATCTGTT AAAGTTGAGG ATTGATGACC AAATGCAGGC ACCTGGATTA CTAGACTTTT CACGACATCC AACTAGTACA GATTCCTGGA AAGTGAGTCC TGGGTGGACC CTAATGAAGT CCACTCTACC CCGGCCATCC ATATGCACTC CCCGCTCTCT CTCTCCCCCG TCATCCATCC TTTACTAACT TAAAACTTAC AGGAGTCGCT CCTTTGCCCT AGCTCAGTTC TTTTTACACG CTCGTGTTTC ATTCTTTCTT AAGGGGAAGG ACATTCTTGA GCGGTAGTCA AACAGAAAAA AATATATGGG TAGCGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGCGT ACnnnnnnnn nnnnnnnnnn nnAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGCGACTT TTTGTTAGGT GAATGATCGC AACAGATTTT CTTATGAAAA ACGATTCTTT TTGGAAACAA AGTTTGTCAA TCTTATCCTC TCTGTCAGAT CGTCCTTCAA TTGGCGATTG ATGTTGGTAG ATCGTAAACA TTCCCTTCGA AGACCTGTCA TGATCATGTT CCCTGTCAAA TACTTGTAAA ATTTTTCAAT TATAGAAACA AAAGAGTGAA AAATTTTGTA TATATTTGTC GAACAATCTA TCACGAAATA TTTATAAAAT AAATAAAAAA CATTATTAGG ATATTTGGAA ATATTACGAT AGTGTAAGTA ACACGCAAGC ACACTTTTCC ATCGTAAATA TTAGCATTAA GTTCTTCAGG GAAGATTATG TGCCCATGAA AATATCTTTT AAGATTCTTT TCTTTGTTGC CATCAGTTGT GGGGTAACCC TGTCGGACTC TTGATGGTCA CATTTCCACA GAATAAAGAC TAGACCAAGT ACTTGTAGAA CGGGTTGATG GGCAACGGGA CCTCATTTTG ACTATTGACA ATTTGAAAAC CTAGATGTAA TTTAGAGCAT CACCAGAATG CGCTTTAACG TATCGGATTT GGTGACCCGG GGATTCGTCG AATGCGACGT ATATGCAATA AAAACCGTGG ACCACCTCTC TGCCTGCCGC CCTTTATTCC ACGTTATCAG AGATGGGAAT ATCAACATCC GTCGCTTCCG CTGTTGACTT GGAAAAATAA CGCCGAACAA CGTCGGCGAA GAGCCTTCCC TTGTTCTATA TGAGGGGCAC CAGTTCCGCA AGAGCTTCAC CACGACACAC TCCGGTAAGC GCGACATCTT CATTTAGCGA GAGAGAGTGA TAGAGAGAAG GCGTCTTTCC ATCGCTAGAA ATGGCGGCCA CATGCAGCGT CTCGCTTGGC ACCCTCCTCG TCCTCCTCCT TTATGTGTTC ACGTCACACG CGCAACTGAC GGCGAACTTC TACTCGTCTA GCTGCCCCAA CTTGGAGACG ATCGTGCAAA GTGCCACGCA AACAGCCGTC ACGAACAACC CCCGCACGCC CGCCTCCCTG CTCCGCCTCT TCTTTCACGA CTGCTTCGTT CAGGTAAGCG CATGCAGAGA CTGTTGTACA TGACGGACAG CCAGTCCTTA TCGCCGCCGC ACATGTGGTC CTGCAGGGCT GCGACGGATC GGTGCTCCTA AACGACACCC CGACGTTCAC TGGGGAGCAG AGCGCCCGGG CAAACAGAGA ACTTAAAGCC CTGGACGTCA TCGAGGACAT CAAGTCCGCC GTCGAGGCGT CATGCAACGG CGTCGTATCA TGCGCCGACA TCCTGGCCCT CGCCACCAGG GACGGCGTCG TCCTGGTGAG TTGTTCTCCT CGACATCGTT GGGATCGTCC CCGTCGATTC TCCGGCGACC AAACTCGCAG TCTAACCAGA GGAGGCTGGC TTCTTCAATG CAGAGCGGAG GGCCCTCGTG GACAGTGCCC CTCGGGCGGC GGGACGCCAC AACGGCCAGC CTGAACGAAG CCAACATCAA CCTCCCTGGT CCGTCGTCTA GCCTCTCTGC CCTCATCACC AGGTTCGCCA GCAAGGGCCT GAGCTTGCAG GAACTCGTGG CCCTCTCCGG CGCGCACACC GTCGGTTTTG CCCCCTGCCG CGCCTTCCGC AACCGCATCT ACAACGACGC TAACATCGAC CTCCCCTTCG CCAACTCCCT CAAGGCCATC TGCCCGCCGT CTTCTCCGAA CGGAGACGAG AACCTCTCGC CGATCGACAT CAGTACACCG ACGGCCTTCG ACAACGCCTA CTACAGAAAC CTCCTATCCT TGCGGGGTCT CCTTCACTCC GACCAGGAGC TCTTCAATAA CGGCTCTGCG GATTCCATCG TCCAAAGCTA CGCAGATAGC AGCTCCATCT TCTTCACAGA CTTCGCGACG GCGATGGTAA ATTTGGGCAG CATCGACCCC CTCACCGGTC CCAATGGGGA GATCAGGCGG GTCTGCAGCA
GGGTGAACTG A

Retrieve as FASTA

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCGGCCACATGCAGCGTCTCGCTTGGCACCCTCCTCGTCCTCCTCCTTTATGTGTTCACGTCACACGCGCAACTGACGGCGAACTTCTACTCGTCTAGCTGCCCCAACTTGGAGACG
ATCGTGCAAAGTGCCACGCAAACAGCCGTCACGAACAACCCCCGCACGCCCGCCTCCCTGCTCCGCCTCTTCTTTCACGACTGCTTCGTTCAGAGGTAAGCGCATGCAGAGACTGTTGTA
CATGACGGACAGCCAGTCCTTATCGCCGCCGCACATGTGGTCCTGCAGGGCTGCGACGGATCGGTGCTCCTAAACGACACCCCGACGTTCACTGGGGAGCAGAGCGCCCGGGCAAACAGA
GAACTTAAAGCCCTGGACGTCATCGAGGACATCAAGTCCGCCGTCGAGGCGTCATGCAACGGCGTCGTATCATGCGCCGACATCCTGGCCCTCGCCACCAGGGACGGCGTCGTCCTGTGG
TGAGTTGTTCTCCTCGACATCGTTGGGATCGTCCCCGTCGATTCTCCGGCGACCAAACTCGCAGTCTAACCAGAGGAGGCTGGCTTCTTCAATGCAGAGCGGAGGGCCCTCGTGGACAGT
GCCCCTCGGGCGGCGGGACGCCACAACGGCCAGCCTGAACGAAGCCAACATCAACCTCCCTGGTCCGTCGTCTAGCCTCTCTGCCCTCATCACCAGGTTCGCCAGCAAGGGCCTGAGCTT
GCAGGAACTCGTGGCCCTCTCCGGCGCGCACACCGTCGGTTTTGCCCCCTGCCGCGCCTTCCGCAACCGCATCTACAACGACGCTAACATCGACCTCCCCTTCGCCAACTCCCTCAAGGC
CATCTGCCCGCCGTCTTCTCCGAACGGAGACGAGAACCTCTCGCCGATCGACATCAGTACACCGACGGCCTTCGACAACGCCTACTACAGAAACCTCCTATCCTTGCGGGGTCTCCTTCA
CTCCGACCAGGAGCTCTTCAATAACGGCTCTGCGGATTCCATCGTCCAAAGCTACGCAGATAGCAGCTCCATCTTCTTCACAGACTTCGCGACGGCGATGGTAAATTTGGGCAGCATCGA
CCCCCTCACCGGTCCCAATGGGGAGATCAGGCGGGTCTGCAGCAGGGTGAACTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCGGCCACATGCAGCGTCTCGCTTGGCACCCTCCTCGTCCTCCTCCTTTATGTGTTCACGTCACACGCGCAACTGACGGCGAACTTCTACTCGTCTAGCTGCCCCAACTTGGAGACG
ATCGTGCAAAGTGCCACGCAAACAGCCGTCACGAACAACCCCCGCACGCCCGCCTCCCTGCTCCGCCTCTTCTTTCACGACTGCTTCGTTCAGGGCTGCGACGGATCGGTGCTCCTAAAC
GACACCCCGACGTTCACTGGGGAGCAGAGCGCCCGGGCAAACAGAGAACTTAAAGCCCTGGACGTCATCGAGGACATCAAGTCCGCCGTCGAGGCGTCATGCAACGGCGTCGTATCATGC
GCCGACATCCTGGCCCTCGCCACCAGGGACGGCGTCGTCCTGAGCGGAGGGCCCTCGTGGACAGTGCCCCTCGGGCGGCGGGACGCCACAACGGCCAGCCTGAACGAAGCCAACATCAAC
CTCCCTGGTCCGTCGTCTAGCCTCTCTGCCCTCATCACCAGGTTCGCCAGCAAGGGCCTGAGCTTGCAGGAACTCGTGGCCCTCTCCGGCGCGCACACCGTCGGTTTTGCCCCCTGCCGC
GCCTTCCGCAACCGCATCTACAACGACGCTAACATCGACCTCCCCTTCGCCAACTCCCTCAAGGCCATCTGCCCGCCGTCTTCTCCGAACGGAGACGAGAACCTCTCGCCGATCGACATC
AGTACACCGACGGCCTTCGACAACGCCTACTACAGAAACCTCCTATCCTTGCGGGGTCTCCTTCACTCCGACCAGGAGCTCTTCAATAACGGCTCTGCGGATTCCATCGTCCAAAGCTAC
GCAGATAGCAGCTCCATCTTCTTCACAGACTTCGCGACGGCGATGGTAAATTTGGGCAGCATCGACCCCCTCACCGGTCCCAATGGGGAGATCAGGCGGGTCTGCAGCAGGGTGAACTGA

Retrieve as FASTA