View Redoxidase 13221

Entry information : SpolPrx20 (Spipo8G0053300)

Entry ID	13221
Creation	2015-06-09 (Christophe Dunand)
Last sequence changes	2015-06-09 (Christophe Dunand)
Sequence status	complete
Reviewer	Catherine Mathe
Last annotation changes	2016-02-25 (Catherine Mathe)

Peroxidase information: SpolPrx20 (Spipo8G0053300)

Name (synonym)

SpolPrx20 (Spipo8G0053300)

Class

Class III peroxidase [Orthogroup: Prx035]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela

Organism

Spirodela polyrhiza (great duckweed) [TaxId: 29656 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SpolPrx20 start..stop	S start..stop
LminPrx65	493	9.82e-178	22..317	22..317
CescPrx11	492	2.05e-177	19..317	19..317
CescPrx36	486	3.36e-175	12..317	10..316
CescPrx35	484	1.55e-174	1..317	1..317

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '13221' 'join(4323025..4323234,4323316..4323507,4323612..4324163)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	4323025..4323234	208	N° 2	4323316..4323507	190	N° 3	4323612..4324163	550
join(4323025..4323234,4323316..4323507,4323612..4324163)

Literature and cross-references SpolPrx20 (Spipo8G0053300)

DNA ref.	Phytozome 12: pseudo8 (4323025..4324163)
Cluster/Prediction ref.	Phytozome Gene 12: 31511649

Protein sequence: SpolPrx20 (Spipo8G0053300)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	317 (307)
PWM (Da):	34124.32 (33696.4)
PI (pH):	8.65 (4.49)	Peptide Signal:	cut: 28 range:28-334

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAVSIKLLALPLLLSLLVCASQAQLSANFYSSSCPNLQRIVRAAMAQAVSREPRIGASIVRLLFHDCFVNGCDASILLDDTATFTGEKTARPNNNSVRGFNVIDDIKTRVEAACRATVSC
ADILALAARDGVALLGGPSWTVTFGRRDARTASISDANSQIPPPFADLSTLISSFSAKGLSAQEMTVLSGSHTIGQARCTTFRTRIYNDTNINGPFAARLRGICPTSGRDNVLAPLDLQT
PNRFDNRYYQNLLTQRGLLHSDQELFNGGSQDALVRRYSSDNGLFSSDFAAAMVKMSAISPLTGTDGEIRTNCRRVN*

Retrieve as FASTA

Remarks

Promoter►
Send to BLAST
Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

TGATGGGTTT TCGTTGGTTC CGATTGCCCA GATCAGCAAA GGCATTCTTC GCAAGTACAT CGGCCCTGTT GATGTCTGGC TGTCGATCTT CCTCTGCCAT CTTCGTCATC CGGACCAGAC CTGCTGCTTT CTGAATGCGT CTCCTCGCAT GAGCTACCGT GCCATGGCTG AGCACAGGAG CCAGTGGCTA TGGTATGCTT ATGCATGGAT ATATATAATT AATCAATATG TAAAGAGAAA ATTTCCCAAG TTCTAGCTTC ATTTATTATC GTTTACTTAA CTGGGTAAAT TTCCCTGGTT CTACAGGTTC CGAAAGCTGT TCGTGTTGCT CTCCAGTTAC ACTTACATGA ACACCCTCAG GAAGGTCAGC GGCCATTAGG GTTTGTAAGC TCCTCAGGAT CTGTCGTGTG CTTATCTGTG CTCTCCGTTA CAATTTTTCT CAATAAATGG GTTATTATAC AGACGACAGC GTCGTTTCTC GGCCCCTTAT TATCCAAGAG AATAATGTTC ATCGGTCTCT CTCTCTCTCT CTCTCTCTCT CTCCGAACTA TCTTATCCCT CCCTTTATTA AATTATATCC TAAGGAAAAA TATGGATGGT TATAATTCCT AAAACATTAT CTTAGTTCTT CTAGCGGATT GGCCGGACCG GTGGATGGTT AACCGGTTTG AAGTTGGATT CGGTCTGCGT TGACCAAATC AGGGGGGCAG TTCCATTACA GATTCGGTCA GCGTAATACC TGCAGGCTGC TGATGCGTTG GCTACCATAA TCCGTCTAGG AATCGTAACG TTAAGCTCGA ATATTTTTTG TAGAAACATT TATTTAATGC AAATAATGGC GCACATCCAA GACTGTCTAG TGCTTTCAGC TGGGTGCCCA GCCACTTGCT GAACCCAACT ACCCTTGATG GGAATCGGAA TAGCCCATCC CCAAAGAGAG AGAGAGCGAG AGAGAGACAG AGCGAGAGCG AGAGAGAGAG AGAGAGAGAG AGAGAGGAGn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnAGA GAGAGAGAGA GAGCGTTTCC TGCATGTAAA GTTGTCCACA CACATTTCTC CGTTGCAGCG GCAATAGTTG AAAACTTTGC GGACCTAACC CGCCGCATGT CACGGTTATT TAAGGACGAG GGGTTTCGTG CAAGCGGAGT ATCACCAGCA GCAACGCTCT CCTAGCCGAT TGGAGCAGCC ATGGCCGTCT CCATCAAGCT CCTCGCGCTC CCTTTACTGC TCTCCCTCCT CGTCTGCGCC TCCCAGGCGC AGCTCTCCGC TAACTTCTAC TCAAGTAGCT GCCCGAACCT GCAGAGGATT GTCCGCGCCG CCATGGCTCA GGCTGTCAGC CGGGAGCCGA GGATCGGTGC CTCCATCGTT CGTCTCCTCT TCCACGACTG CTTCGTTAAT GTCCGTGACG TCCACTTCTT CTTCTTCTTC TTCTTCTTCT TCTTCTTCGC CTGTTGACGT GGATTGATGA AACCCTACCA GGGCTGCGAC GCGTCCATCC TGCTGGACGA CACGGCGACG TTCACCGGAG AGAAGACCGC ACGGCCGAAC AACAACTCCG TGCGGGGCTT CAATGTCATC GACGACATTA AAACCCGCGT CGAAGCAGCC TGCCGGGCCA CTGTCTCCTG CGCCGACATC CTCGCCCTCG CCGCGCGCGA CGGAGTGGCC CTGGTCAGCG CCATTCCTCT TCTCCCCCTA CATAAAACCC TAGCAGACTC TCCTTCTTTC GTAAGGAATC AGAAGACAGC TCTCTCATCT CCTGTGGCTC GGTGCAGCTC GGGGGGCCGT CGTGGACTGT GACTTTCGGC CGAAGGGACG CGAGGACGGC GAGCATCAGC GACGCCAACA GCCAGATCCC GCCGCCGTTC GCCGACCTCT CCACCCTCAT CTCTTCCTTC TCCGCGAAGG GACTCAGCGC CCAGGAAATG ACCGTCCTCT CTGGTTCCCA CACCATCGGC CAAGCTCGCT GCACCACCTT CCGCACGCGC ATCTACAACG ACACCAACAT CAACGGCCCC TTCGCCGCCA GACTCCGCGG CATCTGCCCC ACCTCCGGCA GGGACAACGT CTTGGCCCCC CTGGACCTGC AGACCCCCAA CAGATTCGAC AACAGATACT ACCAGAACCT GCTCACCCAG CGCGGTCTTC TCCACTCCGA CCAGGAGCTC TTCAATGGCG GCTCGCAGGA CGCGCTGGTC CGCCGTTACA GCAGCGACAA CGGCCTCTTC TCCAGCGACT TTGCGGCGGC CATGGTGAAG ATGAGCGCCA TCAGCCCGTT GACCGGCACC GACGGAGAGA TCCGGACGAA
CTGCAGAAGG GTCAACTGA

Retrieve as FASTA

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCCGTCTCCATCAAGCTCCTCGCGCTCCCTTTACTGCTCTCCCTCCTCGTCTGCGCCTCCCAGGCGCAGCTCTCCGCTAACTTCTACTCAAGTAGCTGCCCGAACCTGCAGAGGATT
GTCCGCGCCGCCATGGCTCAGGCTGTCAGCCGGGAGCCGAGGATCGGTGCCTCCATCGTTCGTCTCCTCTTCCACGACTGCTTCGTTAATATGTCCGTGACGTCCACTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCGCCTGTTGACGTGGATTGATGAAACCCTACCAGGGCTGCGACGCGTCCATCCTGCTGGACGACACGGCGACGTTCACCGGAGAGAAGACCGCACGGCCGA
ACAACAACTCCGTGCGGGGCTTCAATGTCATCGACGACATTAAAACCCGCGTCGAAGCAGCCTGCCGGGCCACTGTCTCCTGCGCCGACATCCTCGCCCTCGCCGCGCGCGACGGAGTGG
CCCTGTGGTCAGCGCCATTCCTCTTCTCCCCCTACATAAAACCCTAGCAGACTCTCCTTCTTTCGTAAGGAATCAGAAGACAGCTCTCTCATCTCCTGTGGCTCGGTGCAGCTCGGGGGG
CCGTCGTGGACTGTGACTTTCGGCCGAAGGGACGCGAGGACGGCGAGCATCAGCGACGCCAACAGCCAGATCCCGCCGCCGTTCGCCGACCTCTCCACCCTCATCTCTTCCTTCTCCGCG
AAGGGACTCAGCGCCCAGGAAATGACCGTCCTCTCTGGTTCCCACACCATCGGCCAAGCTCGCTGCACCACCTTCCGCACGCGCATCTACAACGACACCAACATCAACGGCCCCTTCGCC
GCCAGACTCCGCGGCATCTGCCCCACCTCCGGCAGGGACAACGTCTTGGCCCCCCTGGACCTGCAGACCCCCAACAGATTCGACAACAGATACTACCAGAACCTGCTCACCCAGCGCGGT
CTTCTCCACTCCGACCAGGAGCTCTTCAATGGCGGCTCGCAGGACGCGCTGGTCCGCCGTTACAGCAGCGACAACGGCCTCTTCTCCAGCGACTTTGCGGCGGCCATGGTGAAGATGAGC
GCCATCAGCCCGTTGACCGGCACCGACGGAGAGATCCGGACGAACTGCAGAAGGGTCAACTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCCGTCTCCATCAAGCTCCTCGCGCTCCCTTTACTGCTCTCCCTCCTCGTCTGCGCCTCCCAGGCGCAGCTCTCCGCTAACTTCTACTCAAGTAGCTGCCCGAACCTGCAGAGGATT
GTCCGCGCCGCCATGGCTCAGGCTGTCAGCCGGGAGCCGAGGATCGGTGCCTCCATCGTTCGTCTCCTCTTCCACGACTGCTTCGTTAATGGCTGCGACGCGTCCATCCTGCTGGACGAC
ACGGCGACGTTCACCGGAGAGAAGACCGCACGGCCGAACAACAACTCCGTGCGGGGCTTCAATGTCATCGACGACATTAAAACCCGCGTCGAAGCAGCCTGCCGGGCCACTGTCTCCTGC
GCCGACATCCTCGCCCTCGCCGCGCGCGACGGAGTGGCCCTGCTCGGGGGGCCGTCGTGGACTGTGACTTTCGGCCGAAGGGACGCGAGGACGGCGAGCATCAGCGACGCCAACAGCCAG
ATCCCGCCGCCGTTCGCCGACCTCTCCACCCTCATCTCTTCCTTCTCCGCGAAGGGACTCAGCGCCCAGGAAATGACCGTCCTCTCTGGTTCCCACACCATCGGCCAAGCTCGCTGCACC
ACCTTCCGCACGCGCATCTACAACGACACCAACATCAACGGCCCCTTCGCCGCCAGACTCCGCGGCATCTGCCCCACCTCCGGCAGGGACAACGTCTTGGCCCCCCTGGACCTGCAGACC
CCCAACAGATTCGACAACAGATACTACCAGAACCTGCTCACCCAGCGCGGTCTTCTCCACTCCGACCAGGAGCTCTTCAATGGCGGCTCGCAGGACGCGCTGGTCCGCCGTTACAGCAGC
GACAACGGCCTCTTCTCCAGCGACTTTGCGGCGGCCATGGTGAAGATGAGCGCCATCAGCCCGTTGACCGGCACCGACGGAGAGATCCGGACGAACTGCAGAAGGGTCAACTGA

Retrieve as FASTA