View Redoxidase 13748

Entry information : HaCSD03 (HanXRQChr14g0438141)

Entry ID	13748
Creation	2016-05-24 (Christophe Dunand)
Last sequence changes	2016-05-24 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2017-11-23 (Catherine Mathe (Scipio))

Peroxidase information: HaCSD03 (HanXRQChr14g0438141)

Name (synonym)

HaCSD03 (HanXRQChr14g0438141)

Class

Cu/Zn SOD [Orthogroup: CSD002]

Taxonomy

Eukaryota Viridiplantae Streptophyta Asteraceae Helianthus

Organism

Helianthus annuus (Sunflower) [TaxId: 4232 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	HaCSD03 start..stop	S start..stop
LeCSD02	252	9.82e-88	1..157	1..156
ThasCSD03	238	3.67e-82	2..157	7..161
NoffCSD03-1B	234	2.05e-80	2..157	6..160
TsCSD03	233	3.25e-80	2..157	7..161

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '13748' 'join(86763291..86763375,86763623..86763724,86763857..86763952,86764589..86764620,86764811..86764886,86765046..86765099,86765374..86765399)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	86763291..86763375	83	N° 2	86763623..86763724	100	N° 3	86763857..86763952	94	N° 4	86764589..86764620	30
N° 5	86764811..86764886	74	N° 6	86765046..86765099	52	N° 7	86765374..86765399	24
join(86763291..86763375,86763623..86763724,86763857..86763952,86764589..86764620 ,86764811..86764886,86765046..86765099,86765374..86765399)

Literature and cross-references HaCSD03 (HanXRQChr14g0438141)

DNA ref.	HanXRQ genome: HanXRQChr14 (86763291..86765399)

Protein sequence: HaCSD03 (HanXRQChr14g0438141)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	157 (310)
PWM (Da):	15977.02 (33781.1)	Transmb domain:	o546-568i
PI (pH):	7.02 (6.88)	Peptide Signal:	cut: 22 range:19-328

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MGGLKAVAVITGSDNSVKGSLHFLQESNGVTQVRGKISGLKPGPHGFHIHALGDTTNGCNSTGPHFNPLNKEHGAPWDDTRHAGDLGNVIAGQDGVAEVSIDDKIPLSGQYSILGRAVVVHADPDDLGRGNHQLSKTTGNAGARIGCG
VIGLQSS

Retrieve as FASTA

Remarks

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGGTGGTTTGAAAGCGGTTGCAGTCATCACCGGCAGCGACAACTCCGTCAAAGGATCTCTTCACTTTCTTCAGGAATCCAATGTGGTCTCTCTCTCTCTCTCTTTTCACTATGTGTGT
GTGTTTTGTTCTTAAAACACCCAATTGCATCTTTAATTAATTAACAACAAAATCTCATGTGAATTCTTTCTCACTAGTTAAGTTTCTCTAATTCCATATGTTTTTTTTTTCTTTCTAGAG
ATTGCTATTATTAACCTAATATAGTTCATGTATACGGCCTGTATGGTCAGAACCCACTCAAAATTAGTTGATAAATTTAGTGGTTTGAAAACAGGGGTAACTCAAGTGAGAGGTAAGATC
TCAGGGCTTAAACCAGGTCCTCATGGCTTCCATATTCATGCTCTTGGTGATACCACCAATGGCTGCAATTCAACTGTGGTACTTTTTCTTCACAAACTTTTATTTTCACTTATCAATTAT
GTAACTTTTAAGTCAAAATGTTTAATATATTCATTTACGGATGTGATTGGTTACTTGTTCATTCATACATACTTTTGATCCAAAATTTAGGACCTCATTTCAATCCGTTGAACAAAGAAC
ACGGAGCTCCTTGGGATGATACACGCCACGCGGGTGATTTGGGCAACGTTATTGCCGGCCAAGATGTGGTGTGTGCTTCATTGCCCTAAACTCTCGAATTAGTCTTGATTTGGTTAACGA
CCATTTGACATTTTCTTTTGTTGGTTCCATTATTACGCCCCACTTGCTTGCGGTGTGCACATAATATAAATATGTGTGGGCCCTCGGGGGGCAAAAGTGAAATTGTACTAATTTTAATGT
TAATTTACTAATCTCGTGAAAATAACTTTAAAAGAGGCGGACGGTTAATTATGCATCATGTGGTGGCGTTGACAGCCGAAAGACAAAATGGTACATGCACTAACAGGCCTTTGTCCCGAT
TGTTGAGTATTATGTGCCTTATGTCCAAGGCTTGATGCAAAACTACTATTGAGCCAGGGGTTCTCACTGGAAGCAGTCTCTCTATTCCTACGGGGTAGAGGTAAGGCTGTCTACATCTTA
CCCTCCTCAGACCTTACCTTTGCTTTGCTATTGGTGGGATTTACTGAGCATGATGGTGATGATTTGTTGGTTCCATTATACATGAACACATAAAGAATTGATTACAGTCTCAATAAGGGA
TGGTGATTGGGAGCCATGAAATGCAAAGAATTGGCGTAGACGATTCGAGTGTCTACTGTTTATCTTTAGTATCATATAATATACAATCTTTATTCGTTTTGCAGGGGTTGCTGAGGTATC
TATTGATGATAAAAATATGTATGTATCTTATAACTCGCTTGTACCAAATATGTCCTACACGAAATCTTGATTTGGGAAGATAACGGAATTGTTTCTTTCACACATAATCGAAAACCTCAA
TGTTATTCTGACAGAATCGCTCTTTTTTATTTTGGATTTAAAAGCTTTTCTTCTGTTGCATGACTGTATTCTCGGAAATATTTTCCAGATTCCACTAAGCGGGCAATATTCGATTTTGGG
GAGGGCAGTTGTTGTACATGCTGATCCTGATGATCTGGGGAGAGAGGTAACGACTCATGCTTTATGCAAGATTTCATTTTTTTTTTTTTGTAAGTTTTGAAGTAATAGCTACCATATTGA
AGCTATTTAAGGTATTTTAGGAATTTGACTAATATCCGTTATTCATCAACTATCCATTAAATATGTTGCGACTTTCATGCTGCAGGTAATCATCAACTTAGCAAGACAACAGGAAATGCC
GGTGCTAGAATTGGTTGTGTGGTAATTTACTAATTTGCCCCCTTCTCTTTTCACTTATGCTAACAAAATATAAAGATGAACCTGGACAATTTCTAAAATCGTTCAGTTGAAAATACATAT
CGTGATCCGGGTCACTTTATGTTCTCATCAGTAATCTTGGTTAAACCGATCCGAATCTCAGATAATCGTCTTCAAAGATGATTTAGATTTTAGATCAACTGCTTATCATTAAACGGTATA
TATGAATATTCTTGAGAGGAACAGTGATGTTTTTTTTTGCAATGTTATCTAACAGGTGTTATTGGGCTTCAATCTTCAGTG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGGTGGTTTGAAAGCGGTTGCAGTCATCACCGGCAGCGACAACTCCGTCAAAGGATCTCTTCACTTTCTTCAGGAATCCAATGGGGTAACTCAAGTGAGAGGTAAGATCTCAGGGCTT
AAACCAGGTCCTCATGGCTTCCATATTCATGCTCTTGGTGATACCACCAATGGCTGCAATTCAACTGGACCTCATTTCAATCCGTTGAACAAAGAACACGGAGCTCCTTGGGATGATACA
CGCCACGCGGGTGATTTGGGCAACGTTATTGCCGGCCAAGATGGGGTTGCTGAGGTATCTATTGATGATAAAAATATTCCACTAAGCGGGCAATATTCGATTTTGGGGAGGGCAGTTGTT
GTACATGCTGATCCTGATGATCTGGGGAGAGGTAATCATCAACTTAGCAAGACAACAGGAAATGCCGGTGCTAGAATTGGTTGTGGTGTTATTGGGCTTCAATCTTCAGTG

Retrieve as FASTA

cDNA►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGAAGCGGA TTCGGTGGAA GTGCAGAAAC GGTGAAGAAA GCAGATAACC GGAAAAATGG GTGGTTTGAA AGCGGTTGCA GTCATCACCG GCAGCGACAA CTCCGTCAAA GGATCTCTTC ACTTTCTTCA GGAATCCAAT GGGGTAACTC AAGTGAGAGG TAAGATCTCA GGGCTTAAAC CAGGTCCTCA TGGCTTCCAT ATTCATGCTC TTGGTGATAC CACCAATGGC TGCAATTCAA CTGGACCTCA TTTCAATCCG TTGAACAAAG AACACGGAGC TCCTTGGGAT GATACACGCC ACGCGGGTGA TTTGGGCAAC GTTATTGCCG GCCAAGATGG GGTTGCTGAG GTATCTATTG ATGATAAAAA TATTCCACTA AGCGGGCAAT ATTCGATTTT GGGGAGGGCA GTTGTTGTAC ATGCTGATCC TGATGATCTG GGGAGAGGTA ATCATCAACT TAGCAAGACA ACAGGAAATG CCGGTGCTAG AATTGGTTGT GGTGTTATTG GGCTTCAATC TTCAGTGTAA AGCTAGCAAT CAGGCTCATT TACGCTTTGT ATAACATGCA TTTACTTCTT AATCATGTTA TGAGGTCTAA ATATTAACTA TAGAAGCATG TTTGGTATAT ACTTTCCTGG TATGTTTCTG TGAATTCAAA GTTATTTCGG TTGTATTAGT ATATAAACTT GAGATAATAA AACGTGTCAA CAATTAAACG CTACTAGCGT AGTGGTGCCA CCATTAATCT CCGCCACCCA GTGGCAGATC CATGATTTTT AGTCAGCGGG GGACAAAAAC GGTCATGTTG GTATGGATCG GATACTTTGT ATTATTATTT TTGTTTTTAC ATTAAATTGT AGAAAAAAAG TGACGTTGGA ATCGGGTAAA TTTAGCCTTT TAACCGTGGA CTTTTCTATA CTAGCATGGT TATACACGAG ACATTTGAAT CGGGTAAATT
GACGTTGGAT ACTTGGATTT AG

Retrieve as FASTA