Sequence Properties
first value : protein
second value (mature protein) |
Length (aa):  |
329 (308) |
| PWM (Da): |
35487.3 (33444.2) |
Transmb domain: |
o4-26i |
| PI (pH): |
8.16 (8.16) |
Peptide Signal: |
cut: 22 range:22-329 |
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Sequence
Send to BLAST
Send to Peroxiscan
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| *.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MASAVVVLLL LLSSFASQAA AASLTYKHYL KRQHYCPQFP CIVADVIKEA TRRDRIAAPG LLRAFFHDCF VRGCDASLLL DPVAGQPPNE KQSIFNLSIR RLELVDEIKT RLEQACPGKV
SCADILAQAA VEAVHRVGGP KISLRMGRLD GNVSLADDVL RFLPSPFFNT DQLIATFEAV GLGADDVVPL SGGHTFGETH CVAVRPRLDA PGGDPALTPS HAAFLEQTFP DPTCGGGNPF
APGGPAVNLD NITSDRFDGG YFKGIRNGRT AMRSDAALLE GQLKDQVLLY ARDRAAFFTN FTRSLRRMSK LGVKLGEEGE IRTNCRRVN
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Retrieve as FASTA
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| Remarks |
Complete sequence from RNA seq: (scaffold-AZZW-2019415-Chlorokybus_atmophyticus) and genomic (Chlatm_Chrsp64S09153: incorrect prediction of exon 2 due to n in the sequence) |
DNA ►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGCCTCTG CTGTGGTGGT ATTACTGCTG TTGTTGTCCT CCTTTGCATC GCAGGCAGCG GCGGCCTCCC TGACATACAA ACACTACCTG AAGAGGCAGC ACTATTGCCC TCAGTTCCCA
TGCATTGTTG CGGACGTGAT CAAGGAGGCA ACCAGAAGGG TGAGTTGAAG CGTGGGTTGA AGTGTTGTAA GTCTCTCATG CATGCACATA CTTGGTTGTA TGGTAAGTTG ACTATGTGAT
AGGACCGTAT TGCTGCGCCG GGGCTGCTCA GAGCCTTCTT CCATGACTGC TTCGTACGCG GGTGCGATGC ATCCCTCCTG CTGGACCCCG TGGCGGGTAA TATTCGAGCT TAAAATACGC
ATTGTGCACA TCTAACAGGC TCTGTATGCA ATCATTGCCA TTTAGGTGCT TGAGGCCAAT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCnnn nnnnnnnnnn
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
TGCTTGCAGG CCAGCCACCA AATGAGAAGC AGTCCATTTT CAATCTCAGC ATCCGGAGGC TGGAGTTGGT GGATGAGATA AAGACCCGAC TAGAGCAGGT ACCCACATTG CACCCGCACA
CACCCACAGC ATGCACTACA CACCGCATGC ACGAACTCAA CATACCCACA CACCCTCTCT CTGTTGCCTT ACAGGCTTGT CCAGGGAAGG TCTCCTGTGC GGATATCCTA GCGCAGGCTG
CTGTTGAGGC TGTACACAGA GTGGGTGGCC CGAAGATATC GCTGCGAATG GGTCGGCTTG ACGGCAACGT ATCCCTTGCG GACGACGTGC TGCGCTTCCT CCCTTCGCCT TTTTTCAACA
CCGACCAACT CATCGCCACC TTTGAGGCTG TTGGACTGGG GGCTGACGAT GTTGTGCCTC TTAGTGGCGG GCACACCTTT GGAGAAGTGA GTCAGTATGT GTCTTGTTGG TGACTATGTT
CATGTGCGCG GTTGTCTGCC TTGGTTACAT GTGAGGCACG AGACAACTTT TGTGTTGAGC ATATGCATGG TGTTATATTG CTGACTCAGT ACAAGTCAAA CAAGAAGTAC TTGTGGCTTA
AGTATTTGTC CATGTCAATC CTCACATCCC ATGCGTGTGG TTATAGACAC ATTGCGTAGC GGTGAGGCCT AGGTTGGACG CTCCAGGCGG GGACCCGGCA TTGACCCCGA GTCACGCCGC
TTTCTTGGAG CAGACGTTCC CGGACCCAAC ATGCGGCGGC GGGAACCCGT TTGCGCCAGG GGGCCCAGCT GTAAACCTTG ACAACATCAC AAGCGACCGG TTTGATGGGG GCTACTTCAA
GGGCATACGC AACGGCCGCA CAGCAATGCG CTCGGATGCG GCATTGCTCG AAGGACAGTT GAAAGACCAG GTGACTTCTG CGTAATGTAA TGTGCAATGG TTTACTTCTG TCTACGGTGC
TTAACTTGGT TTGTTGGTAG GTGCTGTTGT ACGCGCGTGA CCGAGCTGCC TTTTTCACCA ATTTCACCAG ATCCTTGCGG CGTATGAGCA AGCTGGGGGT GAAGCTTGGG GAAGAGGGTG
AGATTCGCAC CAACTGCAGG AGGGTGAAC
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Retrieve as FASTA
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CDS►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGCCTCTG CTGTGGTGGT ATTACTGCTG TTGTTGTCCT CCTTTGCATC GCAGGCAGCG GCGGCCTCCC TGACATACAA ACACTACCTG AAGAGGCAGC ACTATTGCCC TCAGTTCCCA
TGCATTGTTG CGGACGTGAT CAAGGAGGCA ACCAGAAGGG ACCGTATTGC TGCGCCGGGG CTGCTCAGAG CCTTCTTCCA TGACTGCTTC GTACGCGGGT GCGATGCATC CCTCCTGCTG
GACCCCGTGG CGGGCCAGCC ACCAAATGAG AAGCAGTCCA TTTTCAATCT CAGCATCCGG AGGCTGGAGT TGGTGGATGA GATAAAGACC CGACTAGAGC AGGCTTGTCC AGGGAAGGTC
TCCTGTGCGG ATATCCTAGC GCAGGCTGCT GTTGAGGCTG TACACAGAGT GGGTGGCCCG AAGATATCGC TGCGAATGGG TCGGCTTGAC GGCAACGTAT CCCTTGCGGA CGACGTGCTG
CGCTTCCTCC CTTCGCCTTT TTTCAACACC GACCAACTCA TCGCCACCTT TGAGGCTGTT GGACTGGGGG CTGACGATGT TGTGCCTCTT AGTGGCGGGC ACACCTTTGG AGAAACACAT
TGCGTAGCGG TGAGGCCTAG GTTGGACGCT CCAGGCGGGG ACCCGGCATT GACCCCGAGT CACGCCGCTT TCTTGGAGCA GACGTTCCCG GACCCAACAT GCGGCGGCGG GAACCCGTTT
GCGCCAGGGG GCCCAGCTGT AAACCTTGAC AACATCACAA GCGACCGGTT TGATGGGGGC TACTTCAAGG GCATACGCAA CGGCCGCACA GCAATGCGCT CGGATGCGGC ATTGCTCGAA
GGACAGTTGA AAGACCAGGT GCTGTTGTAC GCGCGTGACC GAGCTGCCTT TTTCACCAAT TTCACCAGAT CCTTGCGGCG TATGAGCAAG CTGGGGGTGA AGCTTGGGGA AGAGGGTGAG
ATTCGCACCA ACTGCAGGAG GGTGAACTGA
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Retrieve as FASTA
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cDNA►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
CTACTCCATT GTTGCCTTTT TCAACATGGC CTCTGCTGTG GTGGTATTAC TGCTGTTGTT GTCCTCCTTT GCATCGCAGG CAGCGGCGGC CTCCCTGACA TACAAACACT ACCTGAAGAG
GCAGCACTAT TGCCCTCAGT TCCCATGCAT TGTTGCGGAC GTGATCAAGG AGGCAACCAG AAGGGACCGT ATTGCTGCGC CGGGGCTGCT CAGAGCCTTC TTCCATGACT GCTTCGTACG
CGGGTGCGAT GCATCCCTCC TGCTGGACCC CGTGGCGGGC CAGCCACCAA ATGAGAAGCA GTCCATTTTC AATCTCAGCA TCCGGAGGCT GGAGTTGGTG GATGAGATAA AGACCCGACT
AGAGCAGGCT TGTCCAGGGA AGGTCTCCTG TGCGGATATC CTAGCGCAGG CTGCTGTTGA GGCTGTACAC AGAGTGGGTG GCCCGAAGAT ATCGCTGCGA ATGGGTCGGC TTGACGGCAA
CGTATCCCTT GCGGACGACG TGCTGCGCTT CCTCCCTTCG CCTTTTTTCA ACACCGACCA ACTCATCGCC ACCTTTGAGG CTGTTGGACT GGGGGCTGAC GATGTTGTGC CTCTTAGTGG
CGGGCACACC TTTGGAGAAA CACATTGCGT AGCGGTGAGG CCTAGGTTGG ACGCTCCAGG CGGGGACCCG GCATTGACCC CGAGTCACGC CGCTTTCTTG GAGCAGACGT TCCCGGACCC
AACATGCGGC GGCGGGAACC CGTTTGCGCC AGGGGGCCCA GCTGTAAACC TTGACAACAT CACAAGCGAC CGGTTTGATG GGGGCTACTT CAAGGGCATA CGCAACGGCC GCACAGCAAT
GCGCTCGGAT GCGGCATTGC TCGAAGGACA GTTGAAAGAC CAGGTGCTGT TGTACGCGCG TGACCGAGCT GCCTTTTTCA CCAATTTCAC CAGATCCTTG CGGCGTATGA GCAAGCTGGG
GGTGAAGCTT GGGGAAGAGG GTGAGATTCG CACCAACTGC AGGAGGGTGA ACTGAACCCG TACTGCGTAC ACACACCATT CATAACGCAT TCTCAACTTC GTTGATCAAC TGGATAGCTA
AGCTAGCTAC GTGTTGCTGA CTGCAGACAT TAATCTTCCT ATGTGAGCCA TTGTGTGATG CATAGGTTAT GTTTACG
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Retrieve as FASTA
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