Sequence Properties
first value : protein second value (mature protein) |
Length (aa): |
160 (131) |
PWM (Da): |
17740.86 (14369.0) |
Transmb domain: |
i13-32o |
PI (pH): |
6.09 (5.17) |
Peptide Signal: |
cut: 30 range:30-160 |
|
Sequence
Send to BLAST
Send to Peroxiscan
|
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MTSQRTRLQW RMLASTILLF LLAAVVADAQ LSPGFYHWTC PHAASVVKAK VDAFVEADRG LAADLMRLHF HDCFVRGCDG SVLLDSTDPN VLTEKSALLN NNSLRGFEQI DKIKMELECA
CPGVVSCADI LALVARDATV KDGRCRYPFE EVGDTFTRWD *
|
Retrieve as FASTA
|
|
Remarks |
Partial sequence from genomic. Only exon 1 and 2 => scaffold border. No EST found. Difficult to found orthologs in Mpolpol and Mpolmon |
DNA ►
Send to BLAST
|
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
CCTTAGCTCA TAAGTTGGAG CAGTTTCATT TCCTTCTCAG ACTTTCTCGG CTGCTTATCG GAGCTCGACT GGGCAGTTTT GATAACTGAT GGTATTCTTA CTCGTGGCGT CATGCAGGAA
GGTGGCTGTG ACCATCGCTT GTGGTGGCCA TCTGCCTCCG GGTGGGGTCG AGGTTTCATT CAGTCGTTGA CGAAAAGCAA CACCGAGAAA ATAATCTGAT CTTAAACATT CGGCAATGAC
GTCACAAAGA ACAAGACTGC AGTGGAGGAT GCTCGCTTCT ACCATTCTTT TGTTCCTTCT TGCGGCAGTT GTTGCAGATG CGCAACTGTC TCCGGGATTC TACCATTGGA CTTGTCCACA
TGCCGCTTCT GTCGTGAAAG CAAAGGTTGA TGCTTTCGTC GAAGCCGATC GGGGATTAGC AGCAGATCTC ATGCGCCTGC ATTTCCACGA TTGCTTCGTT CGAGTAAGAA GAATTACCTC
ATTGTCGAAA GGGCATGTTA CTCCATGTTC GGGATACTTG TTTCTTATGG CTGTTCTTGC TCGTACAACA ATAAGACCAG GACAGGGACA CTAGATCCGA GCATCGTCTT TGATGCACAG
TATCCGTAGA CAAAAGCGTA CTTGAAAATG GTATCGAAAA TATATACTGC TCATATATAA GTCTGGTGCA TGTGCAGGGA TGTGATGGAT CCGTCCTTCT CGATTCAACT GATCCAAATG
TTCTCACGGA GAAGTCAGCG TTGCTGAACA ATAACTCCTT GAGAGGATTC GAGCAAATCG ATAAAATCAA GATGGAGCTC GAGTGTGCAT GCCCAGGTGT TGTATCATGT GCGGATATAC
TAGCTCTCGT CGCCCGCGAT GCCACAGTCA AGGTGAGCCA AGAGCTCATT TCTGATGATT CTTTCAATCA AACACAGTCT TCAGCTGGAT CAAATTATGT CCTTCATAAA TTCTGAATGT
TTGGCACACG TCTCCTTGAA TGCAACGGAG AGAAGTGGTT GGCTGCTTGC CGAGATCGCA TATCGGGTTT CTGTGTCGGC CATCCACATC TTCTCATATC GAAAATCCAC TCGCTCATTT
TGGCTTATGC ACCAGAGTTG AATATCAGTC AGTTTTCGAT GTTTCGTACG ATCTGGCTAA GTACAAAGAA TTCTCGAACT TCAACTCAAT TTTTATGGGG TAATATGAAA TTTTTGTAAG
TGATTTTAAA GATTATTTTA AAATATTAAG TAAAAATTTC GATACTCTAA ACTTGCAAGT AGGATGCTAA CCAATCATAG CAGAACACTC CAAATATGGA TTCGTCACGA AATGACATCT
TTCTAGATTG AAGTAGATCA CATGATTGGT TTTTACCAGG AACGTAAAGA TACATACAAT AATAAATTAA ATGCTAAGCA TGAAAGTATG GCACTAAAAA TCTAGAACCT TCCTGCGTAA
TGAACTTAAG AACGAAGACG ACTCCGAACG ATGCAAATGT CCAATCAGGT TCACTCACAA GGAGGGAACG TTATCTCACT GGAATCTTAT ATGGAAGGTT TCCATCACAG GATGGCCGAT
GCAGATACCC TTTTGAGGAG GTAGGCGATA CCTTCACGCG ATGGGACTGA ACGTTCAAAG TCGGCTGATA TCGAATAGGC GCTGCATGAC CTTGAAACTG TCATAATGAT TCTGTTGGAT
AATCGCAGTA AGGTTTTTTT AAGATAGTCG AACATAGTCG AAAAGAGTAC TTTCCAGAGC AAATTATGTT GTATTCTGGT GCACATCCTT TGATGTTGGA TTAAGTAGCA TTTCATGGCT
TGGGCACAAA AGAATAAAAT GTAAATAA
|
Retrieve as FASTA
|
|
CDS►
Send to BLAST
|
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGACGTCAC AAAGAACAAG ACTGCAGTGG AGGATGCTCG CTTCTACCAT TCTTTTGTTC CTTCTTGCGG CAGTTGTTGC AGATGCGCAA CTGTCTCCGG GATTCTACCA TTGGACTTGT
CCACATGCCG CTTCTGTCGT GAAAGCAAAG GTTGATGCTT TCGTCGAAGC CGATCGGGGA TTAGCAGCAG ATCTCATGCG CCTGCATTTC CACGATTGCT TCGTTCGAGG ATGTGATGGA
TCCGTCCTTC TCGATTCAAC TGATCCAAAT GTTCTCACGG AGAAGTCAGC GTTGCTGAAC AATAACTCCT TGAGAGGATT CGAGCAAATC GATAAAATCA AGATGGAGCT CGAGTGTGCA
TGCCCAGGTG TTGTATCATG TGCGGATATA CTAGCTCTCG TCGCCCGCGA TGCCACAGTC AAGGATGGCC GATGCAGATA CCCTTTTGAG GAGGTAGGCG ATACCTTCAC GCGATGGGAC
TGA
|
Retrieve as FASTA
|
|
cDNA►
Send to BLAST
|
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
CCTTAGCTCA TAAGTTGGAG CAGTTTCATT TCCTTCTCAG ACTTTCTCGG CTGCTTATCG GAGCTCGACT GGGCAGTTTT GATAACTGAT GGTATTCTTA CTCGTGGCGT CATGCAGGAA
GGTGGCTGTG ACCATCGCTT GTGGTGGCCA TCTGCCTCCG GGTGGGGTCG AGGTTTCATT CAGTCGTTGA CGAAAAGCAA CACCGAGAAA ATAATCTGAT CTTAAACATT CGGCAATGAC
GTCACAAAGA ACAAGACTGC AGTGGAGGAT GCTCGCTTCT ACCATTCTTT TGTTCCTTCT TGCGGCAGTT GTTGCAGATG CGCAACTGTC TCCGGGATTC TACCATTGGA CTTGTCCACA
TGCCGCTTCT GTCGTGAAAG CAAAGGTTGA TGCTTTCGTC GAAGCCGATC GGGGATTAGC AGCAGATCTC ATGCGCCTGC ATTTCCACGA TTGCTTCGTT CGAGGATGTG ATGGATCCGT
CCTTCTCGAT TCAACTGATC CAAATGTTCT CACGGAGAAG TCAGCGTTGC TGAACAATAA CTCCTTGAGA GGATTCGAGC AAATCGATAA AATCAAGATG GAGCTCGAGT GTGCATGCCC
AGGTGTTGTA TCATGTGCGG ATATACTAGC TCTCGTCGCC CGCGATGCCA CAGTCAAGGA TGGCCGATGC AGATACCCTT TTGAGGAGGT AGGCGATACC TTCACGCGAT GGGACTGAAC
GTTCAAAGTC GGCTGATATC GAATAGGCGC TGCATGACCT TGAAACTGTC ATAATGATTC TGTTGGATAA TCGCAGTAAG GTTTTTTTAA GATAGTCGAA CATAGTCGAA AAGAGTACTT
TCCAGAGCAA ATTATGTTGT ATTCTGGTGC ACATCCTTTG ATGTTGGATT AAGTAGCATT TCATGGCTTG GGCACAAAAG AATAAAATGT AAATAA
|
Retrieve as FASTA
|
|