Sequence Properties
first value : protein
second value (mature protein) |
Length (aa):  |
374 |
| PWM (Da): |
41957.7 |
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| PI (pH): |
8.18 |
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Sequence
Send to BLAST
Send to Peroxiscan
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| *.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MATAARCFTR SALRSSPATF KTTTTRNARF IIPRQAFRQQ SRRGYADSGA PKSGSSGLLW GGVGLAALGG GYWYYTQNPG AFSKADEKAK GPFVPTFEDY QKVYNAVAKA LEEHDNYDDG
SYGPVLVRLA WHCSGTYDKE TGTGGSNGAT MRFSPESDHG ANAGLKAARD FLEPIKEQFP WITYSDLWIL SGVCAIQEMQ GPHIPFRPGR VDRDVSFCTP DGRLPDASKE QKHLRAIFGR
MGFNDQEIVA LSGAHALGRC HTDRSGYDGP WTFSPTTLTN DYYKLLLEEK WAWKKWDGPK QYEDVKTKSL MMLPTDMVLI KDKSFKQYVE KYAKDNDAFF KDFSDVVLRL FELGVPFTQG
EDARWTFKSS FDEK*
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Retrieve as FASTA
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| Remarks |
Incorrect prediction from JGI: two partial predictions due to scaffold border: scaffold_106:84212-84798 (5'end) and scaffold_2684:766-1362 (3'end). |
DNA ►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGCTACCG CAGCCAGGTG TTTCACCCGC AGTGCTCTGC GCTCTTCCCC GGCAACCTTC AAGACCACCA CCACCCGTAA CGCCCGCTTC ATCATCCCCC GCCAGGCCTT CCGCCAGCAA
TCCCGACGCG GATATGCTGA TAGCGGTGCA CCCAAGTCTG GCAGCAGCGG CCTCCTCTGG GGCGGCGTCG GGCTCGCAGC TCTAGGTGGA GGCTACTGGT ACTATACCCA GAACCCTGGA
GCCTTCTCCA AGGCCGACGA GAAGGCCAAG GGTCCTTTTG TCCCCACCTT CGAGGACTAT CAGAAGGTCT ACAATGCGGT GGCCAAGGCA TTGGAGGAGC ATGACAACTA TGATGATGGC
AGTTATGGCC CTGTGCTCGT GAGATTGGCA TGGCATTGCA GCGGAACGTA AGCAGAAGCA TACTCAACAG TCTTTGAAAG AAGAATGGCT ACTGATGAGA AACAGCTATG ACAAGGAAAC
CGGCACCGGA GGCTCCAACG GCGCAACCAT GAGATTCTCC CCGGAGAGTG ACCACGGCGC AAACGCCGGT CTCAAAGCTG CTCGCGACTT CCTCGAGCCC ATCAAAGGTA CACATCTCTC
ATTCCACTCC TTCCGAATCT CCTTAGTCTT CCATCAAAAT TTTGGGGTTG AGGGGGGGCC CGGCGGGAAA TTTCTCAGCT GACAATTCCT TCCAGAACAA TTCCCATGGA TCACCTACTC
CGACCTCTGG ATCCTCTCAG GAGTCTGCGC CATCCAAGAA ATGCAAGGCC CACACATCCC CTTCCGTCCC GGCCGCGTCG ACCGCGACGT TTCCTTCTGC ACACCTGACG GCCGTCTCCC
CGACGCCTCC AAGGAGCAGA AGCACCTTCG CGCCATCTTC GGCCGCATGG GTTTCAACGA TCAAGAAATC GTCGCTCTGT CCGGCGCTCA CGCCCTAGGA CGCTGCCACA CTGACCGTAG
CGGCTACGAT GGCCCTTGGA CCTTCTCTCC CACCACACTC ACAAACGACT ACTATAAGCT CCTGCTGGAG GAGAAGTGGG CGTGGAAGAA GTGGGATGGA CCCAAGCAGT ATGAGGATGT
CAAGACGAAG AGCTTGATGA TGCTGCCGAC GGATATGGTG CTCATCAAGG ATAAGAGCTT CAAGCAGTAT GTTGAAAAGT ACGCCAAGGA TAACGACGCC TTCTTCAAGG ACTTTTCAGA
TGTTGTTCTG AGGCTCTTTG AGCTTGGCGT GCCGTTTACT CAGGGCGAGG ATGCGAGGTG GACGTTCAAG AGCAGCTTCG ATGAGAAATG A
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Retrieve as FASTA
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CDS►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGCTACCG CAGCCAGGTG TTTCACCCGC AGTGCTCTGC GCTCTTCCCC GGCAACCTTC AAGACCACCA CCACCCGTAA CGCCCGCTTC ATCATCCCCC GCCAGGCCTT CCGCCAGCAA
TCCCGACGCG GATATGCTGA TAGCGGTGCA CCCAAGTCTG GCAGCAGCGG CCTCCTCTGG GGCGGCGTCG GGCTCGCAGC TCTAGGTGGA GGCTACTGGT ACTATACCCA GAACCCTGGA
GCCTTCTCCA AGGCCGACGA GAAGGCCAAG GGTCCTTTTG TCCCCACCTT CGAGGACTAT CAGAAGGTCT ACAATGCGGT GGCCAAGGCA TTGGAGGAGC ATGACAACTA TGATGATGGC
AGTTATGGCC CTGTGCTCGT GAGATTGGCA TGGCATTGCA GCGGAACCTA TGACAAGGAA ACCGGCACCG GAGGCTCCAA CGGCGCAACC ATGAGATTCT CCCCGGAGAG TGACCACGGC
GCAAACGCCG GTCTCAAAGC TGCTCGCGAC TTCCTCGAGC CCATCAAAGA ACAATTCCCA TGGATCACCT ACTCCGACCT CTGGATCCTC TCAGGAGTCT GCGCCATCCA AGAAATGCAA
GGCCCACACA TCCCCTTCCG TCCCGGCCGC GTCGACCGCG ACGTTTCCTT CTGCACACCT GACGGCCGTC TCCCCGACGC CTCCAAGGAG CAGAAGCACC TTCGCGCCAT CTTCGGCCGC
ATGGGTTTCA ACGATCAAGA AATCGTCGCT CTGTCCGGCG CTCACGCCCT AGGACGCTGC CACACTGACC GTAGCGGCTA CGATGGCCCT TGGACCTTCT CTCCCACCAC ACTCACAAAC
GACTACTATA AGCTCCTGCT GGAGGAGAAG TGGGCGTGGA AGAAGTGGGA TGGACCCAAG CAGTATGAGG ATGTCAAGAC GAAGAGCTTG ATGATGCTGC CGACGGATAT GGTGCTCATC
AAGGATAAGA GCTTCAAGCA GTATGTTGAA AAGTACGCCA AGGATAACGA CGCCTTCTTC AAGGACTTTT CAGATGTTGT TCTGAGGCTC TTTGAGCTTG GCGTGCCGTT TACTCAGGGC
GAGGATGCGA GGTGGACGTT CAAGAGCAGC TTCGATGAGA AATGA
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Retrieve as FASTA
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cDNA►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGCTACCG CAGCCAGGTG TTTCACCCGC AGTGCTCTGC GCTCTTCCCC GGCAACCTTC AAGACCACCA CCACCCGTAA CGCCCGCTTC ATCATCCCCC GCCAGGCCTT CCGCCAGCAA
TCCCGACGCG GATATGCTGA TAGCGGTGCA CCCAAGTCTG GCAGCAGCGG CCTCCTCTGG GGCGGCGTCG GGCTCGCAGC TCTAGGTGGA GGCTACTGGT ACTATACCCA GAACCCTGGA
GCCTTCTCCA AGGCCGACGA GAAGGCCAAG GGTCCTTTTG TCCCCACCTT CGAGGACTAT CAGAAGGTCT ACAATGCGGT GGCCAAGGCA TTGGAGGAGC ATGACAACTA TGATGATGGC
AGTTATGGCC CTGTGCTCGT GAGATTGGCA TGGCATTGCA GCGGAACCTA TGACAAGGAA ACCGGCACCG GAGGCTCCAA CGGCGCAACC ATGAGATTCT CCCCGGAGAG TGACCACGGC
GCAAACGCCG GTCTCAAAGC TGCTCGCGAC TTCCTCGAGC CCATCAAAGA ACAATTCCCA TGGATCACCT ACTCCGACCT CTGGATCCTC TCAGGAGTCT GCGCCATCCA AGAAATGCAA
GGCCCACACA TCCCCTTCCG TCCCGGCCGC GTCGACCGCG ACGTTTCCTT CTGCACACCT GACGGCCGTC TCCCCGACGC CTCCAAGGAG CAGAAGCACC TTCGCGCCAT CTTCGGCCGC
ATGGGTTTCA ACGATCAAGA AATCGTCGCT CTGTCCGGCG CTCACGCCCT AGGACGCTGC CACACTGACC GTAGCGGCTA CGATGGCCCT TGGACCTTCT CTCCCACCAC ACTCACAAAC
GACTACTATA AGCTCCTGCT GGAGGAGAAG TGGGCGTGGA AGAAGTGGGA TGGACCCAAG CAGTATGAGG ATGTCAAGAC GAAGAGCTTG ATGATGCTGC CGACGGATAT GGTGCTCATC
AAGGATAAGA GCTTCAAGCA GTATGTTGAA AAGTACGCCA AGGATAACGA CGCCTTCTTC AAGGACTTTT CAGATGTTGT TCTGAGGCTC TTTGAGCTTG GCGTGCCGTT TACTCAGGGC
GAGGATGCGA GGTGGACGTT CAAGAGCAGC TTCGATGAGA AATGA
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Retrieve as FASTA
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