View Redoxidase 15978

Entry information : SaPrx[P]11

Entry ID	15978
Creation	2019-11-27 (Christophe Dunand)
Last sequence changes	2019-11-27 (Christophe Dunand)
Sequence status	theoretical translation / pseudogene
Reviewer	Not yet reviewed
Last annotation changes	2019-11-30 (Christophe Dunand)

Peroxidase information: SaPrx[P]11

Name

SaPrx[P]11

Class

Class III peroxidase [Orthogroup: Prx010]*

Taxonomy

Eukaryota Viridiplantae Streptophyta Orobanchaceae Striga

Organism

Striga asiatica (witchweed) [TaxId: 4170 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SaPrx[P]11 start..stop	S start..stop
SinPrx01	348	2.7e-121	58..264	124..330
SinPrx01	117	2.83e-31	1..91	1..98
OcPrx19	330	4.69e-114	58..264	125..331
OcPrx19	115	1.3e-30	1..74	1..74
MguPrx103	325	3.68e-112	46..264	103..322
MguPrx103	94	1.27e-22	10..74	1..65
RcPrx21	317	3.96e-109	58..264	128..334
RcPrx21	81	5.56e-18	25..73	28..76

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '15978' 'join(2505133..2505354,2505697..2505862,2506020..2506426)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	2505133..2505354	220	N° 2	2505697..2505862	164	N° 3	2506020..2506426	405
join(2505133..2505354,2505697..2505862,2506020..2506426)

Literature and cross-references SaPrx[P]11

Protein ref.	GenBank: GER30962.1

Protein sequence: SaPrx[P]11

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	264 (237)
PWM (Da):	28690.46 (25923.9)
PI (pH):	9.66 (9.28)	Peptide Signal:	cut: 28 range:28-264

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MGRKYFLATLLSLSLSVTVLLSGSASAQLKPNYYANVCPDVENIV
RRAVTAKFKQTFVTVPALIRLFFHDCFVSSGGPMYTVELGRLDGLSSTAASVNGNLPQPGFNLNQLNAMFGSRGLSQEDMIALSACHTVGFSHCSKFSNRIYNFSRQNPVDPTLNPQYATQLQGMCPIKVDPRIAINMDPTSPRTFDNA
YFQNLVQGKGLFTSDQVLFTDTRSRNTVSTWASNSGAFNASFIQAITKLGRVGVKTGRDGNIRIDCGTFN

Retrieve as FASTA

Remarks

Pseudogene from genomic. Exon 2 is missing.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGGGCGAAAATATTTTCTAGCGACATTATTGTCACTTTCTTTGAGCGTTACGGTCCTGTTGTCCGGCTCAGCCTCGGCTCAACTCAAACCAAATTACTACGCGAATGTTTGCCCTGAC
GTTGAGAACATTGTCAGACGAGCCGTAACCGCTAAGTTCAAACAGACTTTTGTTACTGTCCCGGCCTTAATCCGCCTCTTTTTCCATGATTGTTTCGTCTCGCGGTAAATAATACCCAAA
GCTACTTTTTACCTTACGTCAGATTTCTTGTTCCACTTTCATCTGTTCAAATCAATATATTCTACTTATTAGCAACTTTCCATATTTTATTTTTTGAAAATTGTGCTATGAATGATAATG
TGCACTTAGTGAATTAGAAACATATGTAAACAAATATTTTTTTGTTCATTGTTANATATTCTTGCATTGGCTACTAGGGATGCAATTGTCCTGGTTCGTATTTCTTTTTTTTTTTTAATT
TAATTATTTTATTATTATTATTATTATTATTTTGAAGAATACAAATAAAATAACGAAATTAATAATAATAACTGGACCGTTTGCAGTCTGGTGGGCCCATGTACACCGTGGAGTTGGGCC
GACTGGATGGGCTGAGTTCAACGGCCGCAAGTGTGAATGGAAATCTGCCTCAGCCAGGCTTCAATTTGAATCAGCTCAATGCCATGTTTGGTTCCAGGGGATTGTCTCAGGAGGACATGA
TTGCTCTCTCAGAGGTGCTTATTTGCTAACAATTAAATCTGGAAATTCATTTTATTTCACTAACAACACAGAAATTGTTAGGAAATATTAATTTCCAAAAATATCTATTTAATGTATCAA
AGAAATTTGTGTGTCATGTGCTCATATAGATTATCTTTTGGTACTATGCAGCCTGCCACACCGTAGGATTCTCACACTGCAGCAAATTCTCAAACCGAATATACAATTTCAGTCGTCAAA
ACCCGGTCGACCCAACCCTAAACCCACAATACGCGACCCAATTGCAGGGAATGTGCCCAATAAAGGTGGACCCTAGGATCGCCATCAATATGGACCCAACCAGTCCAAGGACGTTCGACA
ATGCCTACTTTCAGAATCTTGTCCAGGGCAAGGGCCTCTTTACCTCGGACCAAGTCCTGTTTACGGACACGAGGTCAAGGAATACAGTTTCTACTTGGGCCTCGAACAGTGGGGCCTTTA
ATGCTAGTTTTATCCAGGCCATCACTAAATTGGGCCGGGTTGGGGTCAAAACTGGGAGGGACGGCAATATCCGGATCGATTGTGGGACATTTAATTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA