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Entry information : SaAPx01
Entry ID 16030
Creation 2019-11-27 (Christophe Dunand)
Last sequence changes 2019-11-27 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2019-12-10 (Christophe Dunand)
Peroxidase information: SaAPx01
Name SaAPx01
Class Ascorbate peroxidase    [Orthogroup: APx003]
Taxonomy Eukaryota Viridiplantae Streptophyta Orobanchaceae Striga
Organism Striga asiatica (witchweed)    [TaxId: 4170 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SaAPx01
start..stop		 S start..stop
SaAPx06 524 0 1..290 1..287
OcAPx02 509 0 1..291 1..288
MguAPx01 490 1.21e-177 1..291 1..288
NtAPx05-1A 484 3.24e-175 1..291 1..287
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2028697..2028809 111 N° 2 2028525..2028658 132 N° 3 2027746..2027795 48 N° 4 2027246..2027311 64
N° 5 2027027..2027075 47 N° 6 2026600..2026682 81 N° 7 2026339..2026418 78 N° 8 2026156..2026258 101
N° 9 2025053..2025250 196  
complement(join(2025053..2025250,2026156..2026258,2026339..2026418,2026600..2026 682,2027027..2027075,2027246..2027311,2027746..2027795,2028525..2028658,2028697. .2028809))


exon

Literature and cross-references SaAPx01
Protein ref. GenBank:   GER42335.1
Protein sequence: SaAPx01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   291 (325)
PWM (Da):   %s   31903.45 (34919.7) Transmb domain:   %s   o262-284i
PI (pH):   %s   6.79 (4.87) Peptide Signal:   %s   cut: 24 range:24-348
Sequence
Send to BLAST
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*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAKVIIDAEY LKEIERARRE LRALIASKNC APIMLRLAWH DAGTYDVNSK TGGPNGSIRN EEECAHGANN GLKIALEFCG KLEQVRSKCP RITFADLYQL AGVVAVEVTG GPTIEFVPGR  KDSKISPKEG RLPNANEGVP HLREVFYRMG LSDKDIVALS GGHTLGRAHP ERSGFDGPWT AEPLKFDNSY FKELLKGENE GLLKLPTDVA LLDDPEFKSY VELYAKDEEA FFKDYAESHK 
KLSELGFNPT QTGAKAIVQN GTILAQSAVG VAVAAAVVIF SYFYEVRKKM K 

Retrieve as FASTA  
Remarks
CDS►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCGAAAG TCATCATCGA CGCGGAATAC CTCAAGGAGA TCGAGAGAGC CCGTCGTGAG CTTCGCGCGC TCATCGCCAG CAAAAACTGT GCACCTATTA TGCTGCGTTT GGCGTGGCAT  GACGCGGGGA CGTATGACGT GAACTCGAAG ACTGGAGGTC CGAATGGTTC GATTCGAAAT GAAGAGGAGT GCGCTCACGG AGCTAACAAT GGCTTGAAAA TCGCGCTCGA GTTTTGTGGT  AAATTAGAAC AAGTGAGGTC TAAATGCCCA AGAATTACAT TTGCAGATTT GTATCAGCTT GCAGGTGTTG TTGCAGTTGA AGTTACGGGA GGCCCTACAA TTGAATTTGT TCCTGGTAGA  AAGGATTCAA AGATTTCTCC AAAGGAAGGA CGACTTCCAA ATGCTAATGA AGGAGTGCCA CACCTTCGGG AGGTGTTCTA TCGTATGGGC TTGTCTGATA AAGATATAGT GGCACTGTCG  GGGGGCCATA CCCTGGGAAG GGCACATCCT GAGAGATCTG GTTTTGATGG TCCTTGGACT GCAGAGCCAT TGAAGTTTGA TAATTCATAC TTTAAGGAAT TGCTTAAGGG GGAAAATGAG  GGCTTGCTAA AACTCCCAAC TGATGTGGCC TTGCTGGATG ATCCAGAATT TAAGAGTTAC GTTGAGCTTT ACGCTAAGGA TGAAGAAGCT TTCTTCAAAG ACTATGCGGA GTCGCACAAA  AAACTTTCCG AATTAGGGTT TAACCCGACC CAAACCGGTG CTAAGGCAAT TGTGCAAAAC GGCACCATAT TGGCTCAAAG TGCCGTTGGA GTTGCAGTTG CTGCTGCAGT TGTGATCTTC 
AGTTACTTTT ACGAAGTGAG GAAAAAGATG AAATAA 

Retrieve as FASTA