Sequence Properties
first value : protein
second value (mature protein) |
Length (aa):  |
363 (345) |
| PWM (Da): |
37910.68 (35915.7) |
Transmb domain: |
o293-311i432-454o474-496i664-681o |
| PI (pH): |
4.47 (4.36) |
Peptide Signal: |
cut: 19 range:19-363 |
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Sequence
Send to BLAST
Send to Peroxiscan
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| *.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MSFKSFVAFL SIALAAHAAT TGVQCPDGNV ASHSACCPFF ALREDLQNNA FSRQCGEETH ETVRLSFHDA IAFSPALKAQ GLPAGGGADG SMLLFPNVEP NFHANLGISD SVDLLTPFLN
NHTDVTAGDL IQFAAAVAIG NCPGAPKLEF KAGRPNATAP APDGLIPEPQ DAVDKIFARM KDGGNFSPDE VVALLASHSI ARADHVDPQI KAAPFDSTPF TFDTQVFLEV LLKGVGFPGS
PNNTGEAESP LPVGSGANVG ELRLQSDFSI ARFINEQDKM TNAFKNAMAK LAVIGQDPNQ LIDCSEVILA PAPASGKPAT FPATKTQSDV EVACYASPFP TLSTDPGATE TIIPHCPNGE
TTC*
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Retrieve as FASTA
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| Remarks |
Probably sequencing error leading to frame shift and prediction error (extra intron) : DPRTACQWQG is missing but found in the DNA. fgenesh1_pm.129_#_17 |
DNA ►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGTCCTTCA AGTCTTTCGT TGCTTTCCTC AGCATTGCCC TTGCTGCTCA CGCCGCGACC ACCGGCGTCC AGTGTCCAGA TGGCAATGTA GCTTCCCATT CTGCTTGCTG CCCGTTTTTC
GCCCTTCGCG AAGACCTGCA AAATAATGCG TAAGCTGTTG CTTCCGGGTT GCGCAGCTCA GTTGGCTGAT CAATTATTTA GTTTTTCTCG CCAGTGCGGT GAGGAAACTC ATGAGACAGT
TCGTCTCAGT TTCCGTTAGT CCATTCCCAG ACGGCCGCGG CGTACCTTTA CTTACTCTTG TATTCTTCTC TTTCAGACGA CGCCATCGCA TTCTCGCCGG CCCTCAAGGC TCAGGGACTC
CCTGCTGGTG GAGGTGCCGA CGGTTCTATG CTTCTTTTCC CCAACGTCGA GCCGAATTTC CACGCAAACC TCGGCATTTC TGACAGCGTT GACCTACTTA CCCCCTTCCT CAACAACCAC
ACCGATGTCA CTGCAGGTGA CCTCATTCAA TTCGCGGCTG CCGTTGCGAT CGGCAACTGC CCTGGTGCTC CCAAGTTGGA ATTCAAGGCC GGGCGTCCAA ATGCCACCGC GCCCGCCCCT
GATGGTCTGA TCCCTGAACC CCAGGACGCG GTCGATAAGA TCTTCGCCCG TATGAAGGAT GGTGGAAACT TCTCACCTGA TGAAGTGGTC GCCTTGCTGG CGTCCCACTC CATTGCGAGA
GCAGATCACG TTGACCCCCA AATCAAGGCT GCTCCCTTCG ACTCGACGCC TTTCACCTTC GACACTCAAG TATTCCTCGA AGTTTTGCTC AAGGGCGTTG GATTCCCCGG ATCCCCAAAC
AACACCGGTC AGTTTATCTG GTCCTTAACG CTTCGCTGTA TCTAATTTGA ATTTGCAGGC GAGGCCGAGT CCCCGCTTCC TGTGGGTTCT GGGGCGAATG TGGGCGAGCT GCGTCTCCAA
TCCGACTTCT CGATCGCTCG TGACCCCGCA CGGCTTGCAC GTGGCAAGGC TTCATCAATG AGCAAGACAA GATGACCAAT GCCTTCAAGA ATGCTATGGC CAAGCTCGCC GTGATTGGTC
AGGACCCCAA CCAGTTGATT GACTGCTCCG AGGTCATTCT TGCCCCCGCT CCTGCCTCCG GCAAGCCGGC GACGTATGTA TTTCCGCCTG TCACATGAAT TTCTCATCTA ATAATTATGT
AGCTTCCCCG CCACCAAGAC ACAGTCTGAC GTTGAGGTGG CATGCTATGC ATCCCCCTTC CCGACCCTCA GCACCGACCC GGGTGCAACA GAGACTATCA TCCCGTGAGG CCATTTTTCC
ATCTGATCAT ATGAGCCTAT GCTGACAAAC GTCCAGGCAC TGCCCCAACG GCGAGACCAC CTGCTAG
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Retrieve as FASTA
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cDNA►
Send to BLAST
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| .........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGTCCTTCA AGTCTTTCGT TGCTTTCCTC AGCATTGCCC TTGCTGCTCA CGCCGCGACC ACCGGCGTCC AGTGTCCAGA TGGCAATGTA GCTTCCCATT CTGCTTGCTG CCCGTTTTTC
GCCCTTCGCG AAGACCTGCA AAATAATGCT TTTTCTCGCC AGTGCGGTGA GGAAACTCAT GAGACAGTTC GTCTCAGTTT CCACGACGCC ATCGCATTCT CGCCGGCCCT CAAGGCTCAG
GGACTCCCTG CTGGTGGAGG TGCCGACGGT TCTATGCTTC TTTTCCCCAA CGTCGAGCCG AATTTCCACG CAAACCTCGG CATTTCTGAC AGCGTTGACC TACTTACCCC CTTCCTCAAC
AACCACACCG ATGTCACTGC AGGTGACCTC ATTCAATTCG CGGCTGCCGT TGCGATCGGC AACTGCCCTG GTGCTCCCAA GTTGGAATTC AAGGCCGGGC GTCCAAATGC CACCGCGCCC
GCCCCTGATG GTCTGATCCC TGAACCCCAG GACGCGGTCG ATAAGATCTT CGCCCGTATG AAGGATGGTG GAAACTTCTC ACCTGATGAA GTGGTCGCCT TGCTGGCGTC CCACTCCATT
GCGAGAGCAG ATCACGTTGA CCCCCAAATC AAGGCTGCTC CCTTCGACTC GACGCCTTTC ACCTTCGACA CTCAAGTATT CCTCGAAGTT TTGCTCAAGG GCGTTGGATT CCCCGGATCC
CCAAACAACA CCGGCGAGGC CGAGTCCCCG CTTCCTGTGG GTTCTGGGGC GAATGTGGGC GAGCTGCGTC TCCAATCCGA CTTCTCGATC GCTCGCTTCA TCAATGAGCA AGACAAGATG
ACCAATGCCT TCAAGAATGC TATGGCCAAG CTCGCCGTGA TTGGTCAGGA CCCCAACCAG TTGATTGACT GCTCCGAGGT CATTCTTGCC CCCGCTCCTG CCTCCGGCAA GCCGGCGACC
TTCCCCGCCA CCAAGACACA GTCTGACGTT GAGGTGGCAT GCTATGCATC CCCCTTCCCG ACCCTCAGCA CCGACCCGGG TGCAACAGAG ACTATCATCC CGCACTGCCC CAACGGCGAG
ACCACCTGCT AG
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Retrieve as FASTA
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