View Redoxidase 1674

Entry information : TsPrx04-2 (Thhalv10023814m / ThPrx04-2)

Entry ID	1674
Creation	2006-03-22 (Christophe Dunand)
Last sequence changes	2011-11-25 (Qiang Li)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2015-11-17 (Christophe Dunand)

Peroxidase information: TsPrx04-2 (Thhalv10023814m / ThPrx04-2)

Name (synonym)

TsPrx04-2 (Thhalv10023814m / ThPrx04-2)

Class

Class III peroxidase [Orthogroup: Prx008]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Eutrema

Organism

Thellungiella salsuginea (Eutrema salsugineum) [TaxId: 72664 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

Salt stress

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	TsPrx04-2 start..stop	S start..stop
TsPrx04-1	639	0	1..316	1..316
BrPrx04-1Aa_other	605	0	1..316	1..317
BstrPrx77	600	0	1..316	1..316
AlyPrx04	599	0	1..316	1..316

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	251476..251673	196	N° 2	251211..251402	190	N° 3	250662..250830	167	N° 4	250177..250568	390
complement(join(250177..250568,250662..250830,251211..251402,251476..251673))

Literature and cross-references TsPrx04-2 (Thhalv10023814m / ThPrx04-2)

DNA ref.	Phytozome 12: scaffold_8 (251673..250177)

Protein sequence: TsPrx04-2 (Thhalv10023814m / ThPrx04-2)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	316 (297)
PWM (Da):	34187.15 (32093.0)	Transmb domain:	i13-30o
PI (pH):	8.25 (8.20)	Peptide Signal:	cut: 20 range:20-316

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAIFKILVLLLSLSCFCQAQLSSTFYDQRCPNALSTIRSSIRTAI
SRERRMAASLIRLHFHDCFVNGCDASVMLVATPTMESERDALANFQSARGFEVIDQAKSAVERVCPGVVSCADIIAVAARDASEYVGGPRYAVKVGRRDSTAAFRAIADSGDLPNFTASLNELSDLFLRKGLNTRDLVALSGAHTLGQAQCVTFKQRLYDNSSDIDAGFSSTRKRRCPVEGGDTTLAPLDQVTPNSFDNNYYRNLMQKKGLLATDQVLFGTGASTDNIVSEYSRNTARFASDYAAAMIKMGDIQTLTGSAG
QIRRICTAVN

Retrieve as FASTA

Remarks

Complete sequence from genomic (3 introns). No EST.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCCATCTTCAAGATTCTTGTGTTGTTGCTAAGCTTGTCTTGTTTCTGCCAAGCACAACTTTCTTCTACTTTCTACGACCAAAGATGTCCAAATGCTCTCTCAACGATCCGATCCTCA
ATCCGAACCGCCATCAGCCGCGAACGTAGAATGGCTGCTTCTCTCATCCGTCTCCATTTCCACGATTGCTTCGTAAATGTATGTCATTAACATTTTGATCTAACATGCGTGTGTGTTCAT
GGACCGCTCTAAAATTTGTATTTTTTTGTAGGGGGTTGTGATGCATCGGTCATGCTTGTGGCAACTCCTACCATGGAGAGTGAGAGAGATGCGTTAGCAAACTTTCAATCAGCGAGAGGA
TTTGAAGTTATTGATCAAGCCAAATCTGCTGTTGAGAGAGTCTGTCCTGGTGTCGTTTCTTGTGCTGATATCATTGCCGTTGCCGCTAGAGACGCTTCTGAATACGTAAGTATTTATCAG
TATCTGTAGCCATACGCATTGACATATGTCAGATATATTTACATGGTTAAATTTTATTTTTGATATTTGTAAGAAATATATATTTCATTTTTAACATAATCTTATGTAAGTACTGAATGA
ATTGTTCATTCCATTTTGTGTTTGAATTTTGCATATACAACTTTTATTTTTACAAGTCTCCATGTTAAAACTCTAAAGTATTTTATTTGAGAAAAAAATAAACACTATCTATTATAACAT
TAACATCTAAACGTAAAGATAAAAGAAATTGAGGTCATACGATATGCATTATACATCAGCTTTTTCAATTTGTTTTCTCGTAGTTCTAATAATTCTTTAATATGTAAATTTGGTGTCATC
AATAGGTGTCGGAGGTCCACGATACGCAGTAAAGGTTGGTCGGAGAGATTCCACCGCCGCGTTTAGAGCTATTGCAGACAGCGGCGATCTCCCCAACTTCACGGCAAGCCTCAACGAACT
CTCTGATCTCTTCCTTCGAAAAGGTCTCAACACTAGAGACCTCGTCGCTCTCTCAGGTCAGTCCCCAAAAACAAATTCTTACTCGCTAATTTGTTTTAATTACTATATTTTAAGAAATTT
CTTGTGACACAAGCAACTTCTATTTGCAGGAGAGCTCACACCTTAGGGCAAGCTCAATGCGTCACGTTCAAGCAAAGGCTTTACGACAACTCGAGCGACATTGATGCCGGATTCTCTAGC
ACACGTAAGCGTCGCTGTCCGGTAGAAGGTGGAGATACGACCCTAGCACCTCTAGATCAAGTGACACCAAATTCGTTCGACAATAACTATTACAGAAACTTGATGCAGAAGAAAGGACTT
TTGGCGACCGATCAGGTTTTGTTCGGAACCGGGGCTTCTACAGACAATATTGTGTCGGAATATAGCAGAAACACAGCTCGATTCGCGTCTGATTACGCAGCTGCAATGATCAAGATGGGA
GATATTCAGACACTCACTGGCTCAGCTGGTCAAATCCGGAGGATCTGCACTGCTGTTAATTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA