Sequence Properties
first value : protein second value (mature protein) |
Length (aa): |
351 (328) |
PWM (Da): |
38559.68 (36288.5) |
Transmb domain: |
i7-29o |
PI (pH): |
7.99 (7.89) |
Peptide Signal: |
cut: 24 range:24-351 |
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Sequence
Send to BLAST
Send to Peroxiscan
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*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MGCGRMVAVV ALLLLLLLSG CGTSSPGGSG VVMVEGQLLR SQAGTVLHFY KINNTCKYVE AYVKHMVNKT WVKDPSIAPA LLRLLYSDCF VTGCDASILL DGEYSEKMAP QNVGLRGFDL
IDRIKRVLEA RCPGVVSCAD ILNLAARDAA SFSGAPAYPV FTGRRDNTRP SCKKSVDLPD PSITWEQALK YFQSKGLDVL DLATLLGAHT LGSTDCSYIL DRLYNFNCTG EPDPTIKHSL
LFQLKKICKS GVDFTIFLNP DSGSHYKFEN SYYSRILKKE AVLGIDQQLL YGNETLQIVQ EFAAGYEDFR LSFALSMSKM GDIGVLTGDK GEIRRNCRFR NIDNPSLKHK S
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Retrieve as FASTA
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Remarks |
Incorrect prediction, contains two splincing errors; extra seq between exons1/2 and exon 3 is missing . Eurfer_16_20314330_20316799_g00978.t1_-1_CDS_2836111844_11606 |
DNA ►
Send to BLAST
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGGTTGTG GAAGGATGGT GGCAGTGGTG GCGCTGCTTC TGCTTCTGCT GCTAAGCGGA TGCGGAACGT CGTCGCCCGG CGGCAGTGGG GTGGTCATGG TGGAGGGACA ACTGCTAAGG
TCGCAGGCGG GGACGGTACT TCACTTCTAC AAGATAAACA ACACATGCAA GTACGTGGAG GCATACGTGA AACACATGGT GAACAAGACG TGGGTTAAAG ACCCTTCCAT CGCCCCTGCG
CTCCTCCGTC TCCTCTACTC CGACTGCTTC GTCACTGTAA CCATTCAACT TTCTCTCTCC CCTTCTTCTC GCTCATTTAG ATATCTTTCC CTCTGTAACT GGCTAATTAG TAATCAATGG
CCGCTGCAGG GATGCGATGC GTCGATACTG TTGGACGGGG AGTACTCGGA GAAGATGGCA CCTCAGAACG TGGGGCTCAG GGGATTCGAT CTGATCGACA GAATCAAGAG GGTGTTGGAG
GCACGGTGCC CTGGCGTTGT CTCCTGCGCC GACATTCTCA ACCTTGCTGC CAGGGATGCA GCTTCCTTTG TCCGTCATCA ATATCTCCCC TCCCTTTCAT TTCATTGTTT AGCCCTATTA
TTATTATTAT GGACGTTTCT TTATGAAAAT TGGAATCCTT ATAACTGTCT ATACATTTAG AGAAACCACA TAATTTAATT TATGCGCTAG ATGAACGAAT TTTTAACATA TATAGGAAGA
ACTTTCTGGC TCTGTTCCTG CGTATCATCA GCATATATAG GAAGATATAG ATTTGAAGAT CCTACGTAGC TAGCAATTGA TTTGGAGAGA AGCGCCCTGT TGTTAATTTC AACTCCAGAT
TTATGCCTCT TATCTTTACT GATCACAACT GCCACCGAGA GGAGCCTGAG CAGTCGATTC ATAAAAAGGA AAGGAGCTGG CCAAAAAGGC CATGATAATT CTTTTAGTTG TTACCAGTTT
CTTCACCTTT TTGGTTGACA GTCTTTTTTT GTGTTTCCCA TGGAATGTTT GAAGTCGGGT GCCCCTGCCT ACCCCGTATT CACCGGAAGA AGGGACAACA CGAGACCAAG TTGCAAGAAA
TCGGTTGACC TTCCTGACCC TTCCATTACA TGGGAGCAAG CACTCAAATA CTTCCAGTCT AAGGGCCTAG ATGTCTTGGA TCTAGCAACC CTTTTGGGTA CACTCTCTCT AGATCTCTCT
TTTGATCGCT TTCTTTCTCT TCTCCCTTTT TTAAATTTGT TGTCGATAAA CATAGCACAC ACTTAGGCTA ACTCATACTT TAAATCCATG GACATATTGC CAGAAGCCTC CCCTTCCGAC
CACAATTTCA GGGCTAGTGA TACATGGTAA CACTGAATTG AGGAGTCCGT TGTTTAGGTT GTGGAGTTAA CCTAAAATAG ATCTGAAATC AGCCTCAGTC AGAAGCTCTG AAACAAGGCC
TCTACTTGAT AGCCTAGATC TCCTGCTTGA TTCAAGCTTC ACCTTATATG TCGTTTATGT AAGACATATG GTGGATGTTT GATAGTCTCG GGTTTCATAT TCATAGGATT TGAAAGCCAA
AGACTTAAGA CCGGACCGCC CTCCTCACTT AAACCTTAAA TTCGACCTTT TCAATGAAAA TAGTAAAATA AGGACTTTAA GCGAAGATTT TATATCTGAC CTAAGATCCT TAGTTTGACG
AACCTTGAAT CCCTTGTCAC ATGAATAAAA GTTTGTCATA ACAGATCCAT ACATCATGAA TTTAATTCAA AGTTATATAG TGTAGACAGA CACGATTTTA CCTCTGTTTG AGAAAAGGAA
TTTCAGATTC TTACTTTGTT GTCAAAATCT CAAATTTCAA GTCGACCGAA AGGAGGTATA ACCTTAACTC CGTGGATCTA AGTTTCCCAA TTATCTCAAG TCACCTTACA TTTCATACAA
AGGCTATTAG AGATCCCAAA AATTAAACTT AGAAGTTCAT GTTCAGAATT CCATATCTAG AATATTGCCC ACTTTGAGTG TAAAGGTTAT TAATCTCTTG TTGGCTTCTA TAGGTGCACA
TACTCTTGGC TCAACTGACT GCAGTTATAT ACTCGATCGG CTCTATAATT TCAATTGCAC TGGAGAACCT GATCCAACCA TAAAACATTC TCTCCTCTTC CAACTAAAGA AAATATGCAA
AAGTGGTGTT GATTTCACCA TCTTCCTCAA TCCAGACTCA GGCAGTCACT ACAAGTTCGA GAACTCATAC TACTCTCGCA TCTTAAAGAA GGAGGCAGTC CTTGGAATAG ATCAACAACT
ATTGTATGGC AATGAAACTC TCCAAATTGT GCAAGAATTT GCTGCAGGTT ATGAAGATTT CAGATTATCA TTTGCATTGT CGATGAGCAA AATGGGGGAT ATTGGGGTGC TGACTGGAGA
CAAAGGAGAG ATTAGAAGGA ATTGTAGATT CAGAAATATT GACAACCCGA GCCTTAAACA TAAATCATAA
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Retrieve as FASTA
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CDS►
Send to BLAST
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGGTTGTG GAAGGATGGT GGCAGTGGTG GCGCTGCTTC TGCTTCTGCT GCTAAGCGGA TGCGGAACGT CGTCGCCCGG CGGCAGTGGG GTGGTCATGG TGGAGGGACA ACTGCTAAGG
TCGCAGGCGG GGACGGTACT TCACTTCTAC AAGATAAACA ACACATGCAA GTACGTGGAG GCATACGTGA AACACATGGT GAACAAGACG TGGGTTAAAG ACCCTTCCAT CGCCCCTGCG
CTCCTCCGTC TCCTCTACTC CGACTGCTTC GTCACTGGAT GCGATGCGTC GATACTGTTG GACGGGGAGT ACTCGGAGAA GATGGCACCT CAGAACGTGG GGCTCAGGGG ATTCGATCTG
ATCGACAGAA TCAAGAGGGT GTTGGAGGCA CGGTGCCCTG GCGTTGTCTC CTGCGCCGAC ATTCTCAACC TTGCTGCCAG GGATGCAGCT TCCTTTTCGG GTGCCCCTGC CTACCCCGTA
TTCACCGGAA GAAGGGACAA CACGAGACCA AGTTGCAAGA AATCGGTTGA CCTTCCTGAC CCTTCCATTA CATGGGAGCA AGCACTCAAA TACTTCCAGT CTAAGGGCCT AGATGTCTTG
GATCTAGCAA CCCTTTTGGG TGCACATACT CTTGGCTCAA CTGACTGCAG TTATATACTC GATCGGCTCT ATAATTTCAA TTGCACTGGA GAACCTGATC CAACCATAAA ACATTCTCTC
CTCTTCCAAC TAAAGAAAAT ATGCAAAAGT GGTGTTGATT TCACCATCTT CCTCAATCCA GACTCAGGCA GTCACTACAA GTTCGAGAAC TCATACTACT CTCGCATCTT AAAGAAGGAG
GCAGTCCTTG GAATAGATCA ACAACTATTG TATGGCAATG AAACTCTCCA AATTGTGCAA GAATTTGCTG CAGGTTATGA AGATTTCAGA TTATCATTTG CATTGTCGAT GAGCAAAATG
GGGGATATTG GGGTGCTGAC TGGAGACAAA GGAGAGATTA GAAGGAATTG TAGATTCAGA AATATTGACA ACCCGAGCCT TAAACATAAA TCATAA
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Retrieve as FASTA
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