Sequence Properties
first value : protein second value (mature protein) |
Length (aa): |
323 (297) |
PWM (Da): |
35032.71 (32480.4) |
Transmb domain: |
i7-24o |
PI (pH): |
7.76 (7.79) |
Peptide Signal: |
cut: 27 range:27-323 |
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Sequence
Send to BLAST
Send to Peroxiscan
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*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MASCSAFVVA AVTVLGLLII QGSSHPQLFP DFYYDTCPDL FPIIRHQVHL AVAKEKRMGA SLLRLFFHDC FVNGCDASVL LDDTPTFTGE KNAAPNRNSI RGFEVIDAIK AAVEVACPGV
VSCADIIAIS ARDSVVVLGG PYWDVKLGRR DARTASQAAA NASIPPPTDS LNQLIASFRA KGLSVRDMVA LSGAHTIGLA RCTNFRNRIY HEKNVDGFFA KERQGSCPRI VGHGDNNLAP
LDVQTPTVFD NHYYKNLLGY KGLLHSDQQL FNGGSTDSIV HTYAENPDAF YADFIAAMIR MGDNRPLVGT HGEIRRSCRK VNH
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Retrieve as FASTA
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Remarks |
Incorrect prediction, contains two ORFs : one with splicing errors and one partial (exon 1 and end of 4 are missing) and with splicing error. Eurfer_16_14200495_14206598_g01248.t1_-1_CDS_2836112654_12402 |
DNA ►
Send to BLAST
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGCTTCCT GCTCTGCATT TGTTGTGGCT GCTGTCACCG TCTTAGGCCT GCTTATCATC CAAGGAAGCT CCCATCCCCA GCTCTTCCCT GATTTCTACT ATGACACCTG CCCTGACCTT
TTCCCAATCA TTCGGCATCA GGTTCACTTA GCAGTTGCTA AAGAAAAGAG GATGGGAGCT TCCCTCCTTC GCCTTTTTTT CCATGACTGC TTTGTTAATG TACTCTCTCT CTCTCTCTCT
CTCTCTTACA GACATGTGAT AAATTTCATG CACGAAGAAA GCCATTTTCA GCACAAGCTA CCCATGCCAT TATGTCTAGA GAAGAATTCA CAGTAGAGCT AAATAGTATG AAGAACTGGC
GAAGAAAAGA ATCCAACTTA CAACTTCTTC TAGAAGTTAG CATTTGGTTT GCTTGTAATA TGAAAATAGT GTACCCGTCA TCTGGAAACT AAGCAGGAAA CCCCCAACCA AATTTGTTGC
AGTAGGGATT AAAACATGAC CCCGAATGGA AATTTCTCCT GCTCTGTTTT CATCCACATT TCCTGAAGGA CTTTTTTCCT CCATCCTCGT GCAATTGTCA AAAGTTTTTT TACTTCAGCT
CATTCTGTTG CATTTCTAAT GACCATGACT TTAACTTTTG CTGCAGGGTT GCGATGCATC AGTGCTGTTG GATGACACAC CAACATTCAC TGGAGAAAAG AATGCAGCTC CAAATAGAAA
CTCCATTAGA GGGTTTGAGG TGATTGATGC CATCAAGGCT GCAGTCGAGG TAGCTTGCCC TGGTGTTGTT TCTTGTGCAG ACATAATTGC AATCTCTGCC AGAGACTCAG TTGTTGTGGT
GAGTTCTCAG TAATAATTAG TTGATAGATT GAAAATTTCA ATGAGTTTAG ATAGAAACAG AAGCTTCCAT TTTACAAATT TTGTGTTTGC TACATGAAAC AACAGATTGA CATGAATATG
TTTTATATAT ACACCATGGA ACAGTTAGGA GGACCATATT GGGATGTGAA ATTAGGAAGA AGAGATGCCA GAACGGCGAG CCAGGCAGCT GCAAACGCAA GCATTCCTCC TCCCACCGAC
AGCCTGAACC AACTCATTGC TAGCTTTCGT GCAAAGGGCC TCTCTGTTCG TGACATGGTT GCATTGTCAG GTACTGCACA CGCTCTTTTC CTACAATTAT TAGCATAATT GTATGAACTT
TCCAATATAA ATATAAAGTT TAGCAGTTCT AGATTTGCTG GGCAGAACTT TGAGAATTAT TTGTAACTAT TTACCGCTGG TTGTGAAAAC AGGGGCACAC ACCATTGGCT TGGCAAGATG
CACCAACTTT AGAAACCGCA TTTACCATGA GAAGAATGTA GATGGGTTCT TTGCCAAAGA AAGGCAAGGG AGCTGCCCAA GAATTGTTGG CCATGGAGAC AACAACTTGG CCCCCCTCGA
TGTGCAGACC CCAACAGTCT TTGACAACCA CTACTACAAG AACCTGCTTG GCTACAAGGG CCTCCTCCAC TCTGACCAGC AGCTCTTCAA TGGCGGATCC ACCGATTCCA TAGTTCACAC
TTACGCCGAA AACCCAGATG CCTTCTATGC AGATTTCATC GCAGCCATGA TCAGAATGGG AGATAACAGG CCTCTCGTTG GGACTCATGG AGAGATAAGA AGGAGCTGCA GGAAGGTGAA
CCATTGA
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Retrieve as FASTA
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CDS►
Send to BLAST
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGCTTCCT GCTCTGCATT TGTTGTGGCT GCTGTCACCG TCTTAGGCCT GCTTATCATC CAAGGAAGCT CCCATCCCCA GCTCTTCCCT GATTTCTACT ATGACACCTG CCCTGACCTT
TTCCCAATCA TTCGGCATCA GGTTCACTTA GCAGTTGCTA AAGAAAAGAG GATGGGAGCT TCCCTCCTTC GCCTTTTTTT CCATGACTGC TTTGTTAATG GTTGCGATGC ATCAGTGCTG
TTGGATGACA CACCAACATT CACTGGAGAA AAGAATGCAG CTCCAAATAG AAACTCCATT AGAGGGTTTG AGGTGATTGA TGCCATCAAG GCTGCAGTCG AGGTAGCTTG CCCTGGTGTT
GTTTCTTGTG CAGACATAAT TGCAATCTCT GCCAGAGACT CAGTTGTTGT GTTAGGAGGA CCATATTGGG ATGTGAAATT AGGAAGAAGA GATGCCAGAA CGGCGAGCCA GGCAGCTGCA
AACGCAAGCA TTCCTCCTCC CACCGACAGC CTGAACCAAC TCATTGCTAG CTTTCGTGCA AAGGGCCTCT CTGTTCGTGA CATGGTTGCA TTGTCAGGGG CACACACCAT TGGCTTGGCA
AGATGCACCA ACTTTAGAAA CCGCATTTAC CATGAGAAGA ATGTAGATGG GTTCTTTGCC AAAGAAAGGC AAGGGAGCTG CCCAAGAATT GTTGGCCATG GAGACAACAA CTTGGCCCCC
CTCGATGTGC AGACCCCAAC AGTCTTTGAC AACCACTACT ACAAGAACCT GCTTGGCTAC AAGGGCCTCC TCCACTCTGA CCAGCAGCTC TTCAATGGCG GATCCACCGA TTCCATAGTT
CACACTTACG CCGAAAACCC AGATGCCTTC TATGCAGATT TCATCGCAGC CATGATCAGA ATGGGAGATA ACAGGCCTCT CGTTGGGACT CATGGAGAGA TAAGAAGGAG CTGCAGGAAG
GTGAACCATT GA
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Retrieve as FASTA
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