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Entry information : SpKat02
Entry ID 1782
Creation 2007-09-19 (Christophe Dunand)
Last sequence changes 2007-09-19 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2007-09-19 (Christophe Dunand)
Peroxidase information: SpKat02
Name SpKat02
Class Catalase     [Orthogroup: Kat001]*
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum propinquum    [TaxId: 132711 ]
Cellular localisation N/D
Tissue types Meristems
Rhizomes
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SpKat02
start..stop		 S start..stop
SbKat03 605 0 199..484 207..492
SbKat03 295 3.32e-95 1..143 1..143
ZmKat1 592 0 199..484 207..492
ZmKat1 296 2.07e-95 1..143 1..143
OsKat02 572 0 199..484 207..492
OsKat02 293 2.15e-94 1..143 1..143
PpeKat01 523 0 199..484 207..492
PpeKat01 275 3.6e-87 1..143 1..143
Literature and cross-references SpKat02
Literature Cordonnier-Pratt,M.-M., Gingle,A., Sudman,M., Marsala,C. and Pratt ,L.H. An EST database from Sorghum: floral-induced meristems.
EST ref. GenBank:   BG050952 [5' end]  BG052855 [3' end]  BG487695 [Fragment]
Protein sequence: SpKat02
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   484
PWM (Da):   %s   49139.51 Transmb domain:   %s   i5-27o
PI (pH):   %s   7.23
Sequence
Send to BLAST
Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MDPYKHRPSS GSNSSFWTTN SGAPVWNNNS ALTVGQRGPI LLEDYHLIEK LAQFDRERIP ERVVHARGAS AKGFFEVTHD VSHLTCADFL RAPGVQTPVI VRFSTVVHER GSPETLRDPR  GFAVKFYTRE GNFDLVGNNM PVFxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxVN TYTLINRDGK PHLVKFHWKP TCGVKCLLDD EAVTVGGTCH  SHATKDLYDS IAAGNYPEWK LYIQTIDLDH EDKFDFDPLD VTKTWPEDII PLQPVGRMVL NKNIDNFFAE NEQIAFCPAI IVPGIHYSDD KLLQTRIFSY ADTQRHRLGP NYLMLPVNAP  KCAHHNNHHE GFMNFMHRDE EVNYFPSRFD PTRHAEKVPI PPRVLTGCRE KCIIEKENNF KQAGERFRSF DPARQDRFIQ RWVDALSDPR VTHEHHTIWI NYWSQCDASL GQKLASRLNL 
KPNM 

Retrieve as FASTA  
Remarks Partial sequence from 16 ESTs. No overlap between 5' and 3' ends but compiled based on homologies with S. bicolor sequence.