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Entry information : SbPrxII03 (Sobic.003G254300.1 [2.1] / Sb03g030950 [1.4] / SbPrxIIC)
Entry ID 1783
Creation 2007-10-01 (Christophe Dunand)
Last sequence changes 2007-10-01 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrxII03 (Sobic.003G254300.1 [2.1] / Sb03g030950 [1.4] / SbPrxIIC)
Name (synonym) SbPrxII03 (Sobic.003G254300.1 [2.1] / Sb03g030950 [1.4] / SbPrxIIC)
Class Atypical 2-Cysteine peroxiredoxin (type II)    [Orthogroup: PrxII001]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type Rhizomes
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrxII03
start..stop		 S start..stop
SpPrxII03 327 1.81e-117 1..162 1..162
ZmPrxII03 324 3.62e-116 1..162 1..162
HvPrxII03 310 1.11e-110 1..162 1..162
ScPrxII03 303 5.76e-108 1..162 1..162
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '1783' 'complement(join(59279934..59280187,59280753..59280832,59281989..59282143))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 59281989..59282143 153 N° 2 59280753..59280832 78 N° 3 59279934..59280187 252  
complement(join(59279934..59280187,59280753..59280832,59281989..59282143))


exon

Literature and cross-references SbPrxII03 (Sobic.003G254300.1 [2.1] / Sb03g030950 [1.4] / SbPrxIIC)
Literature Cordonnier-Pratt,M.-M., Suzuki,Y., Sugano,S., Klein,R., Lim,S., Liang,C., Sun,F. and Pratt,L.H. A Sorghum EST database: anaerobic roots.
DNA ref. Phytozome 12:   chromosome_3 (59282143..59279934)
EST ref. GenBank:   CX610141
Cluster/Prediction ref. UniGene:   Sbi.6951
Protein sequence: SbPrxII03 (Sobic.003G254300.1 [2.1] / Sb03g030950 [1.4] / SbPrxIIC)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   162 (312)
PWM (Da):   %s   17256 (35092.6) Transmb domain:   %s   i7-29o144-166i187-209o
PI (pH):   %s   4.78 (5.68) Peptide Signal:   %s   cut: 19 range:19-330
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAPIAVGDSLPDGQLGWFDENDQLQQVSVHALAAGKKVILFGVPG
AFTPTCSNQHVPGFITQAEQLKAKGVDEILLIVNDPFVMKAWAKTYPENKHVKFLADGSGAYTKALDLELDLTEKGLGVRSKRFALLADDLKVTVANIEEGGQFTISGAEEILKAL

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 3, 2 introns) and 14 ESTs.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTCCGATCGCTGTCGGCGACTCCCTCCCCGACGGCCAGCTCGGGTGGTTCGACGAGAACGACCAGCTGCAGCAGGTCTCCGTCCACGCGCTCGCCGCCGGCAAGAAGGTCATCCTC
TTCGGCGTCCCCGGCGCCTTCACCCCGACCTGCAGGTCCCTATACCCACCCCCCCCCCCCCCCCCCCTTTTCCCGTGCCCGTCTCTTCTCCTCCCGCTTTCTCGGAGATCTCCGAGCTTT
TTGGACCTGTGTTTGTGTTTCTGGGGGAGAGAGATGTCTTTCTAGGTCTCGTCGGGGCGGAGGGGGATTATCTGGGATCTTTTGGAACTAGTTCTATTTCGTATTCGGAATGAAATACTA
GTTAGTTTTGAGCAATAGATCGACAGTAGACTATTTTTTTAGAGTTTTATTAGGGATATATATACCCCCGATCTTAGCCATGCCAGATCGACAGCACATCTGCTGCACGCGGTATCCGGC
AGAGGAGAGCAACCAACCATGCTTGCGCGCTGAGAGGATCGTGAAATAACCAGGCCTTGAAGTGTAGCACAACCGGTTCCACCTCCTAGTTAGCGTCAGGTGCATTGCTGGCAGTAAGGA
GTAGGGTCTGAACCTGTCAATGTTGGGTCAGCAAGAAAACCACGGTCTTCAAGGGGAAGGAGGGGCCTATTGAGTTCACCCCAACGGTGCATGCCGCTTGATAAGGACTATGTTGTTGAG
ATTTGGGCCTTCAAGCAGCACCCATCCCACAACTTTGGGAAGATAATGAATGTGTCGTGTAGGTACGGGTTGTTAAGAAAGATAAGCAACTGCAGTTCAACTATGGCCCCCTGCTCCCTT
CCCAGTGAATGGATTGTGATAGTGTAACTACACGCCAGTGTATTTTTCATGAATCGTAGCTTCCCTCTTTAACTACTGGATTTTATCTAGTCTACCTACAACCCATGATTTTCAGTTTAG
TGTGAACAAAGGTATTATCTAGTGCTTATTGCTCCTTTCATTCCAAATTGTAAGCGGTTCGGGCCTTTTCTGTCTATACATAGTAAAATCTATGTATCTAAAATAGTAAGAACTAAGAAC
TACTTACAATTTGGAATCGAGGGAATACTGACATAAAGTTGATTAGCTGCTTTAGTCTATAAGTTCAATGGAAAATTCCAAATTACTTAAAATTTTAAAAATTTGAAGGTAATTCCACTA
ACTGAAGCCAAGAGTTTTCTTGCTCTTGTATCTCTGAAATCCTTCAATTGTTTCGTGAAATGCTGAAGTACTCAGGCTGTCTCTTTCTGTGCATTTCTTCTATGTTCACAGCACAACCAG
CATGTGCCAGGCTTCATTACACAGGCTGAGCAGCTCAAAGCCAAGGGTGTAGACGAGATCCTGCTTATCAGCGGTATGCTTGCCTATCTATCTGTATTTGTGAAGACAGTTGTTTTGATA
ATTTTTTCATTGCAAATACCAGAGTTGAATAAGAAGCAGTGTGGTCAAACTTATATTGTTCATTCAGATACTGTGATTTTCTTAATGTTCTTTGCATAGCTGTATGGTAGCTCTGCAAAA
TGTTTTGATACACAATGTTATGTTTTTGCATAGTTGTTTTGATACACAATGTTAATGTTTCTTATCGTACTTCATCGTTGAACATTGATGGTATGCTATGTTCCATAAGCATTCGATGTT
ATATTTTTTATCGTACTTCATCATTGAACATTGATTTTTTATCGTAAAACAGCAAAATGCTAAGTGATAGTATGCTATGTTCCATAAGCATTATGGTGCATCTGTAAATAATTGCTGTCA
GGAAGCTAGAGCATTGGTCATATTTATTAGTAACTGTAAATCTGTTCTACCCCTTGGCTACCTGCTGAATGTCATCAGTTTGCCATGTTGTGATTATGACTTTGATCAAAAGTAGCTTGG
CCAGACTATGACATAATTTGCTGCATTGTGATACGCAGTATAAACGACCCATTTGTCATGAAGGCATGGGCAAAGACTTACCCTGAGAACAAACATGTGAAGTTCCTTGCTGACGGGTCT
GGAGCATACACCAAGGCACTCGATCTTGAGCTTGATCTTACAGAGAAAGGACTGGGTGTCCGCTCCAAAAGGTTTGCTCTTCTGGCAGACGACCTCAAGGTCACTGTCGCAAACATCGAG
GAAGGTGGACAGTTCACAATCTCTGGTGCTGAGGAGATCCTGAAAGCGCTTTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTCCGATCGCTGTCGGCGACTCCCTCCCCGACGGCCAGCTCGGGTGGTTCGACGAGAACGACCAGCTGCAGCAGGTCTCCGTCCACGCGCTCGCCGCCGGCAAGAAGGTCATCCTC
TTCGGCGTCCCCGGCGCCTTCACCCCGACCTGCAGCAACCAGCATGTGCCAGGCTTCATTACACAGGCTGAGCAGCTCAAAGCCAAGGGTGTAGACGAGATCCTGCTTATCAGCGTAAAC
GACCCATTTGTCATGAAGGCATGGGCAAAGACTTACCCTGAGAACAAACATGTGAAGTTCCTTGCTGACGGGTCTGGAGCATACACCAAGGCACTCGATCTTGAGCTTGATCTTACAGAG
AAAGGACTGGGTGTCCGCTCCAAAAGGTTTGCTCTTCTGGCAGACGACCTCAAGGTCACTGTCGCAAACATCGAGGAAGGTGGACAGTTCACAATCTCTGGTGCTGAGGAGATCCTGAAA
GCGCTTTAG

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TACCCGCAAT CAAGTCCCCA TTCACTCGCC TGCGCTTCCT CTCCTCGCCG CGCCGCCCGG CTGCCCCCCA CCCCACCCCT CCTGCACGCA AGGCCATGGC TCCGATCGCT GTCGGCGACT  CCCTCCCCGA CGGCCAGCTC GGGTGGTTCG ACGAGAACGA CCAGCTGCAG CAGGTCTCCG TCCACGCGCT CGCCGCCGGC AAGAAGGTCA TCCTCTTCGG CGTCCCCGGC GCCTTCACCC  CGACCTGCAG CAACCAGCAT GTGCCAGGCT TCATTACACA GGCTGAGCAG CTCAAAGCCA AGGGTGTAGA CGAGATCCTG CTTATCAGCG TAAACGACCC ATTTGTCATG AAGGCATGGG  CAAAGACTTA CCCTGAGAAC AAACATGTGA AGTTCCTTGC TGACGGGTCT GGAGCATACA CCAAGGCACT CGATCTTGAG CTTGATCTTA CAGAGAAAGG ACTGGGTGTC CGCTCCAAAA  GGTTTGCTCT TCTGGCAGAC GACCTCAAGG TCACTGTCGC AAACATCGAG GAAGGTGGAC AGTTCACAAT CTCTGGTGCT GAGGAGATCC TGAAAGCGCT TTAGGAGTTT GATCTCTTCT  ATCAAAAAGC TCGGCAATGT TGTGGACACC AGTCTAATTT GAACTTTGAA CTCATCTTTG AATAACTTGC CGTCGGACAA GATCAGTTCC ATGATGTATA TGAAACGGTC GTCGTTGAGT 
CATGCACAAT TTGGTATTTT CATATGTTAT ATTCGCCGGT TCGAGTAACT TTCGATTCGT CGTTACACAA AGTTGATGCT GAGAAATCGA CAAGTATTTT ACTGCC 

Retrieve as FASTA