Entry information : AtPrx52 (At5g05340 / PER52 / AtperoxP52 / ATP49)
| Entry ID | 218 |
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| Creation | 2006-02-10 (Filippo Passardi) |
| Last sequence changes | 2015-06-03 (Christophe Dunand) |
| Sequence status | complete |
| Reviewer | Christophe Dunand |
| Last annotation changes | 2016-05-18 (Christophe Dunand) |
Peroxidase information: AtPrx52 (At5g05340 / PER52 / AtperoxP52 / ATP49)
| Name (synonym) | AtPrx52 (At5g05340 / PER52 / AtperoxP52 / ATP49) | ||||||||||||||||||||||||||||||||||||
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| Class | Class III peroxidase [Orthogroup: Prx006] | ||||||||||||||||||||||||||||||||||||
| Taxonomy | Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis | ||||||||||||||||||||||||||||||||||||
| Organism | Arabidopsis thaliana [TaxId: 3702 ] | ||||||||||||||||||||||||||||||||||||
| Cellular localisation | N/D |
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| Tissue types | Flowers Mixed tissues Siliques |
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| Inducer | N/D |
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| Repressor | N/D |
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| Best BLASTp hits |
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| Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '218' 'complement(join(1579142..1579533,1580038..1580203,1580293..1580484,1580595..1580819))' |
Exons►
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Literature and cross-references AtPrx52 (At5g05340 / PER52 / AtperoxP52 / ATP49)
| Literature | REFERENCE 1 Herrero J, Esteban Carrasco A, Zapata JM Arabidopsis thaliana peroxidases involved in lignin biosynthesis: in silico promoter analysis and hormonal regulation.
Plant Physiol Biochem. 2014;80:192-202 REFERENCE 2 Fernández-Pérez F, Pomar F, Pedreño MA, Novo-Uzal E. The suppression of AtPrx52 affects fibers but not xylem lignification in Arabidopsis by altering the proportion of syringyl units. Physiol Plant. 2015;154(3):395-406 |
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| Protein ref. | UniProtKB: Q9FLC0 |
| DNA ref. | Phytozome 12: Chr5 (1580819..1579142) |
| mRNA ref. | GenBank: NM_120616 |
| Cluster/Prediction ref. | Phytozome Gene 12: 19665519 UniGene: At.28537 |
| Omic ref. | AtProteome: At5g05340 ATTED-II: At5g05340 e-FP Browser: At5g05340 ePlant: At5g05340 Genevestigator: At5g05340 TAIR: At5g05340 |
Protein sequence: AtPrx52 (At5g05340 / PER52 / AtperoxP52 / ATP49)
| Sequence Properties first value : protein second value (mature protein) |
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| Sequence Send to BLAST Send to Peroxiscan |
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| Remarks | Complete sequence from genomic (chromo 5, 3 introns), 2 cDNA and 4 ESTs. | ||||||||||||
| Promoter► Send to BLAST Send to cis Analysis |
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| Terminator +► Send to BLAST Send to cis Analysis |
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| DNA ► Send to BLAST |
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| CDS► Send to BLAST |
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| cDNA► Send to BLAST |
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