View Redoxidase 222

Entry information : AtPrx56 (At5g15180 / PER56 / AtperoxP56 / ATP33)

Entry ID	222
Creation	2006-01-26 (Filippo Passardi)
Last sequence changes	2015-06-03 (Christophe Dunand)
Sequence status	complete
Reviewer	Achraf Jemmat
Last annotation changes	2015-11-05 (Achraf Jemmat)

Peroxidase information: AtPrx56 (At5g15180 / PER56 / AtperoxP56 / ATP33)

Name (synonym)

AtPrx56 (At5g15180 / PER56 / AtperoxP56 / ATP33)

Class

Class III peroxidase [Orthogroup: Prx054]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis

Organism

Arabidopsis thaliana [TaxId: 3702 ]

Cellular localisation

N/D

Tissue types

Flowers
Roots
Siliques
Whole seedlings

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	AtPrx56 start..stop	S start..stop
AlyPrx56-1	632	0	1..329	1..329
BstrPrx35	630	0	1..329	1..329
AhalPrx41	626	0	1..329	1..327
CrubPrx46	604	0	1..329	1..330

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '222' 'join(4930561..4930791,4930876..4931061,4931385..4931550,4931805..4932211)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	4930561..4930791	229	N° 2	4930876..4931061	184	N° 3	4931385..4931550	164	N° 4	4931805..4932211	405
join(4930561..4930791,4930876..4931061,4931385..4931550,4931805..4932211)

Literature and cross-references AtPrx56 (At5g15180 / PER56 / AtperoxP56 / ATP33)

Protein ref.	UniProtKB: Q9LXG3
DNA ref.	Phytozome 12: Chr5 (4930561..4932211)
mRNA ref.	GenBank: NM_121522
Cluster/Prediction ref.	Phytozome Gene 12: 19669260 UniGene: At.43105
Omic ref.	AtProteome: At5g15180 ATTED-II: At5g15180 e-FP Browser: At5g15180 ePlant: At5g15180 Genevestigator: At5g15180 TAIR: At5g15180

Protein sequence: AtPrx56 (At5g15180 / PER56 / AtperoxP56 / ATP33)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	329 (298)
PWM (Da):	36087.58 (32696.9)	Transmb domain:	i7-29o
PI (pH):	8.54 (8.56)	Peptide Signal:	cut: 32 range:32-329

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAALKMTISCFLFLQVIYCLLSSFAPTNVQGLKVGFYDKACPKAE
LIVKKSVFEAVKNDRTIAAPLLRMFFHDCFVRGCEGSVLLELKNKKDEKNSIPNLTLRGFEIIDNVKAALEKECPGIVSCSDVLALVARDAMVALNGPSWEVETGRRDGLVTNITEALLNLPSPFNNISSLITQFQSKGLDKKDLVVLSGGH
TIGNGHCPQITNRLYNFTGKGDSDPNLDTEYAVKLRGKCKPTDTTTALEMDPGSFKTFDESYFKLVSQRRGLFQSDAALLDNQETKSYVLKSLNSDGSTFFKDFGVSMVKMGRIGVLTGQ
VGEVRKKCRMVN

Retrieve as FASTA

Remarks

Complete sequence from genomic (4 introns), 4 cDNA and 7 ESTs (4 only in roots).

Promoter►
Send to BLAST
Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

TGACATCATT AATGGAAACA CAAGAAGTAT TAGCCCAATC AGGCAATGCA TCAACACTCA AAAGCCGAAA TGTTGAAGGT AGTTTCTCAT TAGGTGGACA AAAACGACGA ATGGCCTCTA CATCGTCTTC AGCCTAAAAC AGTTCCATCA CATCAAACAA AGCCTCAAAG AAACAACAAA AAAAGCAACA TTCTTTGGTT AAGCCAAATA AGTTACCTTT CGAGCTTTCT TAGCAGCTCT TCCATTGAGC AAAACTAGCT TGAAGAAATG GTGACCAGGG ATCAATTCAA TAAGATCATC ATTACATACT GAAACCTCTT CACTAGGTTT CACTTTCTTT CTCTCTCCGT CACCGGAAGA CCTAATAACA ACCGGATTTG TTCCGTCCTA CCCAAAAGAC ACAAACTTGA CATGATTCAA TTCGATAAGA AGCCAAAGTT ATAATTTTTA ATGTTGTTAT AGTTATTACC ACTGACAACG AAGCTGAGCC AGAAGTGGAA ACGATAATGG TGATGTGTTT GCGACTGAGA CGCTTATCGA CGATTGAAAC GTTGCCACGG CCAATGATGT TTGGACCTTC GGATAAAGTT ATCCTTGGAG ATGAATTGTC TTCCTTTAAA TCTGCTTTCA ATGGAATCAA ATAAGCAACC TGCAACAGAT ACATAAATCA GAGCAAGACA TCGAATTTTC TGTAATTGGA AGAAACGGAA ATTAGGGTTT TGTTTTGAAT TACCTGAGAG TGAGCCATTA AGGAAGACAA GTGTCTGAGG TTGAATTGAA CCAAGGAAGA AGAAGAAGAT GCAAAACGCT GCGTTTCAGT GAACTAACTA GCGAAAATTT TGGGATGTTT CAATGGAGAA TAATGGGCAA GAAATTCATA GTAACGGTAA CGGTTCTCCA CGCCGGCGGC GACAATCAGA CAACCGCATC ATCATCAGCC GATGGGTCTT TGGCTTGTGA AGTTGTACAA TATATTAATT TAAGAAACAT TGTCATCAAA GTCTGGGTGG TGTAGTCGGT TATCACGCTA GTCTCACACA CTAGAGGTCC CCGGTTCGAA CCCGGGCTCA GACATTTTTT TTTCTTCATT TTTTTCAATT GACACGTGTC CGAACCTTGC CCAAAAATAA TAGTATGATT AACATATTTT ATCTTCCCAT TACGTTGAAA TGTTACAATC GAATATTCGA ATGAGTGTGA TTGGAATTGG ATGAACATGC AGATTGTTAC GTGGACAAAA TAATTGTGAT CAAGTCCAAA GATTAAACAA TGTAGTTTAA CTCCAAAGAG TTTGTAAGAT AAAGGATATT GATTATATTA TGTTAATCAA ATTTTTAAGA TGTATTATTT TGTTCTCCTA CCGTATTATT GTCACTTTTC AGTTGCGAAG TCAAATGTCA CAAGCAATAT TGTTCATTGT TAATCCTCCT ACCTACCAGT CATTGTCTAC GTGTAAATTA GATAGCTATG GACGGCTTGT GTTCCATTCT AATTGTTATA CGTATAATAT AGTTTTTTCT TGTGGTTTAC TTGTCGATTT CAAGTTAGTT ATCGACAAAT TACCATTATT CGTTATCAAG TGTTTTCTTA TTCGTTACAA CACCTAGTTG ACGAAAAGAT CTGAATATTG CCAAATTTCA AAAACTTATT AAGTTTGTGT TGGTTATTTT TTTCATTGTT TAAAATCATT GGCACCCTTT TTCTGGTGTA AATAGTAATA AACATCAACG AAGACGATAA GCCATAAACA AAGGACAGCT ATATATATTC CACAAACAAC AATATAAAAT TCAACAAATT TACAAAAAAT TCCTATATCT TTGTCTTTAA AATTCAATGA TGTAACCACG AACACTTTGT ATTTTTGTAT TTCAACCTTA AACTATAGTA CTAACAAGTT CCGTGACATT ATTACATAAG
CACGTTAGTA TAAATAACAA CAACAATATT AACTCAATTA GTATCATCGA TCATCTGTCA AAAAGAGGAG CTAATAATAA T

Retrieve as FASTA

Terminator +►
Send to BLAST
Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

GTATATTTTA TATAGATATG TCTGTGAGAT TGTTTTATGA TTATGTATGT GTTTTTCCCT AAGAATATTG TGTGGAGTTA TATGTATTGT ACAATGGAAT GTTAAATTGT AAAATATGTC ATGTTTTATT TATCACAAAA GAAAAAATTC GATTACGATT TTATTTCTTA ATATATAGTT TATATTTTGC TTTAATATAT ATTTCTTTTT TGTTTTGGGC TTATCTGATC TACACTCACT ATATACATTA AATATATCAA GATTAAAAAT TGTAGTTTTT GGAAATTCAA TAGATTTTAA AAAGCATCCT AAATTACCTT TCCATTTTGT AGTAAACAAT TTTGTTGGCT TATATCATTT AGTGGCAAAC CATCAGTAAA GTTTAAACTT TACAAGGACT ATGATATTTT TGACTCGTAA ATTAGTTTTT ATTAGTCGAT CTTATCTTCA ATGTCACAAG TATTTATTAA GAATTAAAAC TCTAATGAGG TGGCAATAAT TATGGATTTT TAATGTTATG AGTCTACATC ATTTCAAATT TGTGCCATAT ACAAATACAC ATGTGTATGT ATGTAGTTTG CTAAATGATA CATAGAGAGT GGTCATATAA GGTAAACAAA AAGTGGAGCA TAAAGTTTCA TAAGCTCATA TATACAGATT CACGGTTTAT ATACACATGA CTTTTATCAC CATAAAAAAC AAAAAAAGCT TTCTCTCACT CTCTAAACAA GGATCTTCCA AAAACAAAAC GAAACGAAAC AACAATAAAA AAAAGTTCAA AGCAACCAAA AAAAAACAGA GAAATTGAAA GAAGACATAT CACCTGCACA AACTAGTGTA AATGAGATCA AATTCATATA AGTTTAGTGT AATTTGTTGG ATCGATATAT ACATCGAGAA ACAAACCTTG ATCGATTTTG GATCTGTGAA TCATCATCAC TGAGTCTGAA CAACGTTAAC
GGATCTCCCT TTTCCACTAA GTGGCGAACA AGGCAAATTC T

Retrieve as FASTA

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCTGCTTTGAAGATGACTATCTCTTGTTTCTTGTTTCTTCAAGTAATATATTGCTTGCTCTCTTCATTTGCTCCAACAAATGTGCAAGGATTGAAAGTTGGATTCTACGACAAGGCA
TGCCCCAAAGCCGAGCTTATTGTCAAAAAGTCTGTCTTCGAGGCTGTGAAGAATGATCGGACAATTGCAGCTCCTTTGCTCAGGATGTTCTTCCACGATTGCTTCGTTAGGGGGTAATGT
CCTTTCTTGACATCCTGAATTTTCCTTTTAGTCTTTTTGACACCTTGTGATCTAATGATTGAATCATGATGTTTTAGGGATGCGAAGGGTCGGTATTGCTAGAGCTAAAGAACAAAAAAG
ATGAGAAAAACTCAATTCCTAACCTCACCCTTCGAGGATTTGAGATCATAGACAATGTCAAGGCAGCTCTAGAAAAGGAGTGTCCGGGCATTGTTTCTTGCTCTGATGTATTGGCTCTTG
TCGCTAGAGACGCAATGGTTGCGCGGTAAGTATAAATTCTTACTATCATGTGATCTAATATTTGGTCAGAGCTCACGGTGTCTTTATTACACGCTCCTTGTATTTATTACTACAAAGTTC
ACATGGCGATTATAGACATCATAAATAGGGTTGGGCGTATTCTTCTATTTTTTTGATGCTACAAAATGCACTTGACTTAAATTTTCAAGAGACTAGTTCAGCTTTCTATCTGAGATTTTC
TGACTAATATATTAAAGAAAATATATCCATAAAAAAAATTATGTATTATATGTTGTGTTGAACTTTTAACATCATGTATTTTATGATAACCAATCAATATATGTTCAGCTCAATGGACCG
TCGTGGGAGGTTGAAACGGGACGAAGAGACGGTCTGGTTACAAACATCACTGAGGCCTTATTAAACTTACCATCACCATTTAATAATATCAGTAGCCTTATCACTCAATTCCAGTCCAAA
GGCCTCGACAAGAAAGACCTCGTTGTGCTTTCAGAGGTATGTTATGGAATCAGAAAATTCTTTAAATTATACTTGAACGATGCATCAAATAATTAAAGGGCAGTGTTCTTTGAACAAATG
TTTTTCTCTTTTTTCCAAGCATTGTTTGGCTATTTTGGACTAGCAACTAACAATAATACTCTTTCTTCTACATATTTTCTATATTACTCTCTGGCTTCGGATCACTAGTTGTAAAATAAT
AAAAATAAAATCATTCTCATATAATTTGTATATTATTTACATTTTGATAGGTGGGCACACAATTGGGAATGGACATTGTCCACAGATCACAAACCGTCTCTACAACTTCACCGGAAAAGG
AGATAGTGACCCGAACTTAGACACGGAATACGCAGTCAAACTCAGAGGAAAATGCAAGCCAACTGATACCACAACGGCTCTAGAAATGGATCCAGGAAGCTTTAAAACGTTCGATGAAAG
TTACTTCAAGCTTGTGTCTCAAAGAAGAGGATTGTTTCAATCTGATGCAGCTCTTTTAGACAATCAAGAAACTAAGTCTTATGTTCTCAAGAGTTTGAATAGTGATGGGTCTACTTTCTT
TAAAGACTTTGGTGTCTCCATGGTAAAAATGGGTCGGATTGGAGTTTTAACGGGTCAGGTTGGGGAAGTTCGCAAGAAGTGCAGAATGGTTAATTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA

cDNA►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

AGTATCATCG ATCATCTGTC AAAAAGAGGA GCTAATAATA ATATGGCTGC TTTGAAGATG ACTATCTCTT GTTTCTTGTT TCTTCAAGTA ATATATTGCT TGCTCTCTTC ATTTGCTCCA ACAAATGTGC AAGGATTGAA AGTTGGATTC TACGACAAGG CATGCCCCAA AGCCGAGCTT ATTGTCAAAA AGTCTGTCTT CGAGGCTGTG AAGAATGATC GGACAATTGC AGCTCCTTTG CTCAGGATGT TCTTCCACGA TTGCTTCGTT AGGGGATGCG AAGGGTCGGT ATTGCTAGAG CTAAAGAACA AAAAAGATGA GAAAAACTCA ATTCCTAACC TCACCCTTCG AGGATTTGAG ATCATAGACA ATGTCAAGGC AGCTCTAGAA AAGGAGTGTC CGGGCATTGT TTCTTGCTCT GATGTATTGG CTCTTGTCGC TAGAGACGCA ATGGTTGCGC TCAATGGACC GTCGTGGGAG GTTGAAACGG GACGAAGAGA CGGTCTGGTT ACAAACATCA CTGAGGCCTT ATTAAACTTA CCATCACCAT TTAATAATAT CAGTAGCCTT ATCACTCAAT TCCAGTCCAA AGGCCTCGAC AAGAAAGACC TCGTTGTGCT TTCAGGTGGG CACACAATTG GGAATGGACA TTGTCCACAG ATCACAAACC GTCTCTACAA CTTCACCGGA AAAGGAGATA GTGACCCGAA CTTAGACACG GAATACGCAG TCAAACTCAG AGGAAAATGC AAGCCAACTG ATACCACAAC GGCTCTAGAA ATGGATCCAG GAAGCTTTAA AACGTTCGAT GAAAGTTACT TCAAGCTTGT GTCTCAAAGA AGAGGATTGT TTCAATCTGA TGCAGCTCTT TTAGACAATC AAGAAACTAA GTCTTATGTT CTCAAGAGTT TGAATAGTGA TGGGTCTACT TTCTTTAAAG ACTTTGGTGT CTCCATGGTA AAAATGGGTC GGATTGGAGT TTTAACGGGT CAGGTTGGGG AAGTTCGCAA GAAGTGCAGA ATGGTTAATT AAGTATATTT TATATAGATA TGTCTGTGAG ATTGTTTTAT GATTATGTAT
GTGTTTTTCC CTAAGAATAT TGTGTGGAGT TATATGTATT GTACAATGGA ATGTTAAATT GTAAAATATG TCATGTTTTA TTTATCACAA AAGAAAAAAT TCGA

Retrieve as FASTA