Entry information : AtPrx57 (At5g17820 / PER57 / AtperoxP57 / PRXR10 / ATP13a / AtP13 / Atprxr10g)
Entry ID | 223 |
---|---|
Creation | 2006-02-10 (Filippo Passardi) |
Last sequence changes | 2015-06-03 (Christophe Dunand) |
Sequence status | complete |
Reviewer | Achraf Jemmat |
Last annotation changes | 2015-11-05 (Achraf Jemmat) |
Peroxidase information: AtPrx57 (At5g17820 / PER57 / AtperoxP57 / PRXR10 / ATP13a / AtP13 / Atprxr10g)
Name (synonym) | AtPrx57 (At5g17820 / PER57 / AtperoxP57 / PRXR10 / ATP13a / AtP13 / Atprxr10g) | ||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Class | Class III peroxidase [Orthogroup: Prx016] | ||||||||||||||||||||||||||||||||||||
Taxonomy | Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis | ||||||||||||||||||||||||||||||||||||
Organism | Arabidopsis thaliana [TaxId: 3702 ] | ||||||||||||||||||||||||||||||||||||
Cellular localisation | Cell wall |
||||||||||||||||||||||||||||||||||||
Tissue types | Mixed tissues Radicles Root tips Roots Roots hairs Whole seedlings |
||||||||||||||||||||||||||||||||||||
Inducers | Cold stress Hormon treatment Light growth Stress treatment |
||||||||||||||||||||||||||||||||||||
Repressor | N/D |
||||||||||||||||||||||||||||||||||||
Best BLASTp hits |
|
||||||||||||||||||||||||||||||||||||
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '223' 'complement(join(5888195..5888480,5888908..5889356,5889895..5890101))' |
Exons►
|
Literature and cross-references AtPrx57 (At5g17820 / PER57 / AtperoxP57 / PRXR10 / ATP13a / AtP13 / Atprxr10g)
Literature | REFERENCE 1 Borderies G, Jamet E, Lafitte C, Rossignol M, Jauneau A, Boudart G, Monsarrat B, Esquerré-Tugayé MT, Boudet A, Pont-Lezica R. Proteomics of loosely bound cell wall proteins of Arabidopsis thaliana cell suspension cultures: a critical analysis. Electrophoresis. 2003 Oct;24(19-20):3421-32.
REFERENCE 2 Tsukagoshi H, Busch W, Benfey PN. Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root. Cell. 2010 Nov 12;143(4):606-16. |
---|---|
Protein ref. | UniProtKB: Q43729 |
DNA ref. | Phytozome 12: Chr5 (5890101..5888195) |
mRNA ref. | GenBank: NM_121788 |
Cluster/Prediction ref. | Phytozome Gene 12: 19666464 UniGene: At.25535 |
Omic ref. | AtProteome: At5g17820 ATTED-II: At5g17820 e-FP Browser: At5g17820 ePlant: At5g17820 Genevestigator: At5g17820 TAIR: At5g17820 |
Protein sequence: AtPrx57 (At5g17820 / PER57 / AtperoxP57 / PRXR10 / ATP13a / AtP13 / Atprxr10g)
Sequence Properties first value : protein second value (mature protein) |
|
||||||||||||
Sequence Send to BLAST Send to Peroxiscan |
|
||||||||||||
Remarks | Complete sequence from genomic (introns 1 and 3'), 9 cDNA and 23 ESTs. Mainly from roots. Loosely cell wall bound. Protein evidence in roots. Containing IntR (3'). | ||||||||||||
Promoter► Send to BLAST Send to cis Analysis |
|
||||||||||||
Terminator +► Send to BLAST Send to cis Analysis |
|
||||||||||||
DNA ► Send to BLAST |
|
||||||||||||
CDS► Send to BLAST |
|
||||||||||||
cDNA► Send to BLAST |
|