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Entry information : TpsCP01
Entry ID 2544
Creation 2005-11-16 (Christophe Dunand)
Last sequence changes 2011-05-20 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-05-20 (Christophe Dunand)
Peroxidase information: TpsCP01
Name TpsCP01
Class Catalase peroxidase     [Orthogroup: CP001]*
Taxonomy Eukaryota Bacillariophyta Coscinodiscophyceae Thalassiosiraceae Thalassiosira
Organism Thalassiosira pseudonana    [TaxId: 35128 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TpsCP01
start..stop		 S start..stop
SpliCP01 853 0 4..724 21..748
MAspCP01 845 0 1..724 6..736
FspCP_CcI3 825 0 7..725 20..744
TcurCP01 823 0 23..724 40..744
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '2544' 'join(1..127,209..356,451..619,689..883,982..2550)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1..127 125 N° 2 209..356 146 N° 3 451..619 167 N° 4 689..883 193
N° 5 982..2550 1567  
join(1..127,209..356,451..619,689..883,982..2550)


exon

Literature and cross-references TpsCP01
Literature Armbrust,E.V., et al., The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science 306 (5693), 79-86 (2004).
DNA ref. GenBank:   NC_012083.1 (669124..671673)
Protein sequence: TpsCP01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   735 (325)
PWM (Da):   %s   81476.53 (35477.8)  
PI (pH):   %s   6.15 (7.36) Peptide Signal:   %s   cut: 29 range:29-353
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAAESKCPYKGGSTPTTKPQTIRDWWPDSLDLRILHQDPITAHSFAQLDLHQLRNDIYKALTTSNPNWPADYGHYGPLMIRLAWHSAGTYRVFDGRGGGNSGNIRLAPLNSWPDNANLDKARRYILWPIKQKYGQQISWSDLIVLAGWEDTTPLWFGGGRID
AFAPEEDVFWGNESEWLKDERHEKRSAEDDSTGLEKPLGAVQMGLIYVNPEGPGGNPDILASAKDIRETFSRMGMSDFETVALIAGGHTFGKAHGSADPSKYVGAEPEGAPVEQMGLGWK
NAYGTGKGRDTITSGLEGAWTNKPTQWDNGYFELLFKYDWTQSKSPGGATQWIPRRGSGVADVPDAHDASVKHLPIMFTTDLALRYDPIYGPISQRFHLNPHEFTDAFKRAWYKLCHRDM
GPLQRHLGQWLPTEDLIWLDPIPSSNGNTINVNDVSILKSKISDLINSSTLSVSDLVKAAWASASTYRCTDHRGGANGGRIRLNPQKSWDVNDPSSLGKVIVTLESIQQNFNAMNSNQVS
FADLVVLGGNVAIEEAARRAGHYNVRVTFVPGRMDAFQSQTDVVSFNALQPMVDGFRNYEGNSSTSALRPEEALIDRAHLLTLSAPETVVLLGGMRVLNANTDNSNIGVLTERPGALTND
FFVHLLDENTNWTSMNDGKLFRGRTSRDKNWIASRVDLLLGSNSQLRAIAESYACTDSTKFFVKDFLSVWSKVMMLDRFDMIPPVVEMNSRL*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 20, 3 introns). no EST.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCCGAGAGCAAATGCCCCTACAAAGGCGGCAGCACCCCCACCACCAAACCCCAAACAATCCGAGACTGGTGGCCAGACTCCCTAGATCTGCGAATCCTCCATCAAGATCCAATC
ACCGCCCCCGTCCGTCACACGTGCCTCATCCTTTGTCGGCATCTCCCGTCGCCCATCACTTCGTGTCAACATCGTATGCATCCTATGCAGACAGCTTTGCACAGTTGGATCTACACCAGT
TGAGGAACGATATCTACAAGGCGTTGACTACGTCTAATCCCAATTGGCCTGCGGATTATGGTCATTATGGACCGTTGATGATTCGGTTGGCTTGGCATTCTGCCGGGACGTATCGAGTGT
GTGAGTACTCAGATTGTCCAGTTTGAAATTGATGTACACCCTGTCCAACGCACATCACTCATTCAACACTTTCTTCCCTTCACTCATCTCGCAGCTTTGACGGACGAGGAGGCGGAAACA
GCGGTAACATCCGTCTTGCACCTCTCAACTCGTGGCCTGACAATGCCAACCTCGACAAAGCCCGTCGATACATCCTATGGCCGATCAAACAAAAGTACGGACAACAAATCAGTTGGTCTG
ACTTGATCGTCCTGGCCGGAAATATGTAGCTTTGGAAAGCATGGGTCTCGATGGTAGTAGTGGCAATAACAATTATGGGGGAAGTCGAAAAAAGTGGGAGGACACAACGCCATTGTGGTT
TGGTGGTGGAAGGATTGACGCCTTTGCTCCTGAGGAGGATGTGTTTTGGGGGAATGAAAGTGAGTGGTTGAAGGATGAGAGGCATGAGAAGAGGAGTGCGGAAGATGATAGTACGGGGTT
GGAGAAGCCTTTGGGGGCTGTGCAGATGGGGCTGATATATGTCAATCCGCGGTGAGTTCTATTTTGACATTATTCTTTAGTGTTGGGTACCATCATTCTCTTGTCCCACCGTACTCATCT
TGAGGCACCATTCATACTCTCTATCCAAGGAGGGACCTGGAGGTAATCCAGATATACTAGCCTCGGCCAAAGATATTCGTGAAACCTTCTCTCGAATGGGCATGTCCGATTTCGAAACAG
TAGCTCTCATCGCAGGTGGACATACCTTTGGAAAAGCTCACGGAAGTGCCGATCCTTCCAAGTACGTCGGTGCCGAGCCAGAGGGTGCTCCGGTAGAACAAATGGGATTGGGGTGGAAGA
ACGCCTACGGAACTGGAAAGGGAAGGGATACGATAACTAGTGGGCTTGAGGGAGCATGGACGAACAAACCAACTCAATGGGACAATGGATACTTTGAACTCTTATTCAAGTATGATTGGA
CTCAGTCGAAGAGTCCTGGAGGTGCAACTCAATGGATTCCGAGAAGAGGGAGTGGAGTGGCCGATGTTCCAGATGCTCATGATGCATCAGTCAAGCATCTACCAATCATGTTTACTACCG
ATTTGGCACTGCGTTATGATCCGATCTACGGTCCCATATCTCAGAGATTCCACCTTAATCCACACGAGTTTACAGATGCCTTCAAACGTGCTTGGTATAAGTTATGCCATCGTGATATGG
GACCGTTGCAAAGGCATCTTGGGCAGTGGTTGCCGACGGAGGACTTGATTTGGTTGGATCCCATTCCGTCTTCAAACGGCAATACAATCAATGTGAATGATGTTAGTATTTTGAAGAGTA
AGATATCAGATCTCATCAACTCGTCGACGCTGTCAGTATCCGACTTGGTGAAGGCGGCATGGGCATCTGCATCCACCTATCGCTGCACCGATCATCGTGGAGGTGCAAATGGTGGCAGGA
TTCGTCTCAATCCGCAGAAAAGTTGGGATGTTAACGATCCGTCCAGCCTTGGTAAGGTCATTGTCACTTTGGAGAGCATTCAGCAGAATTTCAATGCAATGAATAGCAATCAAGTATCAT
TTGCTGATCTGGTAGTGTTGGGAGGTAATGTTGCCATCGAAGAGGCTGCACGTCGAGCCGGTCACTACAATGTTCGTGTAACGTTTGTTCCAGGAAGGATGGATGCATTCCAATCTCAAA
CGGACGTCGTGTCATTCAATGCATTGCAGCCGATGGTAGATGGCTTTCGTAACTACGAAGGAAACAGTAGTACTAGTGCATTACGTCCGGAGGAAGCATTGATCGATCGAGCTCATCTCT
TGACACTATCGGCTCCGGAAACGGTGGTTTTACTCGGCGGTATGCGAGTGTTGAATGCCAATACGGACAATTCAAACATTGGAGTGTTGACGGAACGGCCTGGAGCTTTGACGAATGACT
TTTTTGTTCACTTGCTTGATGAAAACACAAATTGGACTTCCATGAACGATGGAAAGTTGTTCCGAGGAAGGACTTCACGGGACAAGAACTGGATCGCGAGTAGAGTTGATTTGCTATTGG
GTTCCAACTCCCAACTTCGTGCCATTGCAGAGTCATATGCATGTACTGACTCGACGAAGTTTTTTGTGAAGGACTTTCTAAGTGTATGGAGTAAGGTGATGATGCTGGATAGATTTGATA
TGATTCCGCCGGTGGTTGAGATGAATAGTAGATTGTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCCGAGAGCAAATGCCCCTACAAAGGCGGCAGCACCCCCACCACCAAACCCCAAACAATCCGAGACTGGTGGCCAGACTCCCTAGATCTGCGAATCCTCCATCAAGATCCAATC
ACCGCCCACAGCTTTGCACAGTTGGATCTACACCAGTTGAGGAACGATATCTACAAGGCGTTGACTACGTCTAATCCCAATTGGCCTGCGGATTATGGTCATTATGGACCGTTGATGATT
CGGTTGGCTTGGCATTCTGCCGGGACGTATCGAGTCTTTGACGGACGAGGAGGCGGAAACAGCGGTAACATCCGTCTTGCACCTCTCAACTCGTGGCCTGACAATGCCAACCTCGACAAA
GCCCGTCGATACATCCTATGGCCGATCAAACAAAAGTACGGACAACAAATCAGTTGGTCTGACTTGATCGTCCTGGCCGGAAATTGGGAGGACACAACGCCATTGTGGTTTGGTGGTGGA
AGGATTGACGCCTTTGCTCCTGAGGAGGATGTGTTTTGGGGGAATGAAAGTGAGTGGTTGAAGGATGAGAGGCATGAGAAGAGGAGTGCGGAAGATGATAGTACGGGGTTGGAGAAGCCT
TTGGGGGCTGTGCAGATGGGGCTGATATATGTCAATCCGGAGGGACCTGGAGGTAATCCAGATATACTAGCCTCGGCCAAAGATATTCGTGAAACCTTCTCTCGAATGGGCATGTCCGAT
TTCGAAACAGTAGCTCTCATCGCAGGTGGACATACCTTTGGAAAAGCTCACGGAAGTGCCGATCCTTCCAAGTACGTCGGTGCCGAGCCAGAGGGTGCTCCGGTAGAACAAATGGGATTG
GGGTGGAAGAACGCCTACGGAACTGGAAAGGGAAGGGATACGATAACTAGTGGGCTTGAGGGAGCATGGACGAACAAACCAACTCAATGGGACAATGGATACTTTGAACTCTTATTCAAG
TATGATTGGACTCAGTCGAAGAGTCCTGGAGGTGCAACTCAATGGATTCCGAGAAGAGGGAGTGGAGTGGCCGATGTTCCAGATGCTCATGATGCATCAGTCAAGCATCTACCAATCATG
TTTACTACCGATTTGGCACTGCGTTATGATCCGATCTACGGTCCCATATCTCAGAGATTCCACCTTAATCCACACGAGTTTACAGATGCCTTCAAACGTGCTTGGTATAAGTTATGCCAT
CGTGATATGGGACCGTTGCAAAGGCATCTTGGGCAGTGGTTGCCGACGGAGGACTTGATTTGGTTGGATCCCATTCCGTCTTCAAACGGCAATACAATCAATGTGAATGATGTTAGTATT
TTGAAGAGTAAGATATCAGATCTCATCAACTCGTCGACGCTGTCAGTATCCGACTTGGTGAAGGCGGCATGGGCATCTGCATCCACCTATCGCTGCACCGATCATCGTGGAGGTGCAAAT
GGTGGCAGGATTCGTCTCAATCCGCAGAAAAGTTGGGATGTTAACGATCCGTCCAGCCTTGGTAAGGTCATTGTCACTTTGGAGAGCATTCAGCAGAATTTCAATGCAATGAATAGCAAT
CAAGTATCATTTGCTGATCTGGTAGTGTTGGGAGGTAATGTTGCCATCGAAGAGGCTGCACGTCGAGCCGGTCACTACAATGTTCGTGTAACGTTTGTTCCAGGAAGGATGGATGCATTC
CAATCTCAAACGGACGTCGTGTCATTCAATGCATTGCAGCCGATGGTAGATGGCTTTCGTAACTACGAAGGAAACAGTAGTACTAGTGCATTACGTCCGGAGGAAGCATTGATCGATCGA
GCTCATCTCTTGACACTATCGGCTCCGGAAACGGTGGTTTTACTCGGCGGTATGCGAGTGTTGAATGCCAATACGGACAATTCAAACATTGGAGTGTTGACGGAACGGCCTGGAGCTTTG
ACGAATGACTTTTTTGTTCACTTGCTTGATGAAAACACAAATTGGACTTCCATGAACGATGGAAAGTTGTTCCGAGGAAGGACTTCACGGGACAAGAACTGGATCGCGAGTAGAGTTGAT
TTGCTATTGGGTTCCAACTCCCAACTTCGTGCCATTGCAGAGTCATATGCATGTACTGACTCGACGAAGTTTTTTGTGAAGGACTTTCTAAGTGTATGGAGTAAGGTGATGATGCTGGAT
AGATTTGATATGATTCCGCCGGTGGTTGAGATGAATAGTAGATTGTGA

Retrieve as FASTA