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Entry information : TeCP01
Entry ID 2565
Creation 2010-05-06 (Christophe Dunand)
Last sequence changes 2010-05-06 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2010-05-06 (Christophe Dunand)
Peroxidase information: TeCP01
Name TeCP01
Class Catalase peroxidase     [Orthogroup: CP001]*
Taxonomy Bacteria Cyanobacteria Trichodesmium
Organism Trichodesmium erythraeum    [TaxId: 1206 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TeCP01
start..stop		 S start..stop
SpliCP01 595 0 1..494 19..503
SpliCP01 117 1.48e-27 562..646 667..749
SpliCP01 115 8.03e-27 494..570 673..749
BBFL7CP03 541 0 1..494 23..507
BBFL7CP03 101 1.91e-22 562..646 671..753
BBFL7CP03 100 2.6e-22 494..570 677..753
AlmacCP01 541 0 5..494 21..502
AlmacCP01 106 4.05e-24 567..645 669..747
AlmacCP01 103 3.33e-23 497..569 675..747
ACmaCP01 534 0 1..494 2..485
ACmaCP01 111 9.02e-26 564..646 650..732
ACmaCP01 107 2.22e-24 497..570 659..732
Literature and cross-references TeCP01
Literature Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. CONSRTM US DOE Joint Genome Institute (JGI-PGF). Sequencing of the draft genome and assembly of Trichodesmium erythraeum IMS101.
DNA ref. GenBank:   NC_008312.1 (2679099..2680758)
Protein sequence: TeCP01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   636
PWM (Da):   %s   70191.16 Transmb domain:   %s   i3-25o
PI (pH):   %s   4.75
Sequence
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Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
NSKNKCPFSS VVIKRGAGDG TSNHNW*PNK LKLNIVRQNY SLSNLMGKSF NYIEEFKSPD LNVIKQDIFD LIIKSQDCWP TNYGQHSIVQ VLIVLLMTVV LEALVCRVFP IEQLGxxxxx  FSPLNS*ADN TNLHKARVLT WPVKQKYGRK IF*ADLIILA GNCVLESMKL KTFGFAGGRE DVSEKEEDIN WGS*SE*LGD KRYSGDRDLE NSLGAVQMGL LYVDPEEPNR NTDPLAAAQN  IRETFGRMSM NDEETVALIA GGHTFGKPHG APDPEQYIDR EPEGAKIE*Q SMGWKNTFVS GHGVATITSL LEEAWTNTPT QWSNNFFKNL FGYE*ELTKN PAGAHQ*IQF LKEELAQLLS  LIQDFSKSHP PFMLTTNLAL PFDPFDPIYR TISQHFYENP DEFADVFVRA LFKLTHRDIG PIARYLGPEA PKEEFI*QGL IPTVTHDLID HQDTTALKKG KILASGLFVY ELVATACASA  STFRGSDKCG SVNGxxWSSY SSDQEVFDGV DRATGEVKWT GTRIDLIFGS NSEL*ALAEV YSSSDSQEKF FEDFIAAWTK VINLDRLNLA CKWSSYSSDQ EVFDGVDRAT GEVKWTGTRI 
DLIFGSNSEL *ALAEVYSSS DSQEKFFEDF IAAWTKVINL DRLNLA*L 

Retrieve as FASTA  
Remarks Low quality genomic sequence. START methionine not found. More than a half of the C terminus is missing. It seems to have been deleted! Several stop codons in the sequence.