View Redoxidase 2632

Entry information : CcriAPx02 ( CHC_T00008640001)

Entry ID	2632
Creation	2005-12-28 (Christophe Dunand)
Last sequence changes	2015-08-10 (Christophe Dunand)
Sequence status	complete
Reviewer	Achraf Jemmat
Last annotation changes	2016-02-11 (Achraf Jemmat)

Peroxidase information: CcriAPx02 ( CHC_T00008640001)

Name (synonym)

CcriAPx02 ( CHC_T00008640001)

Class

Ascorbate peroxidase [Orthogroup: APx2007]

Taxonomy

Eukaryota Florideophyceae Gigartinaceae Chondrus

Organism

Chondrus crispus [TaxId: 2769 ]

Cellular localisation

Cytosolic

Tissue type

Thallus

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	CcriAPx02 start..stop	S start..stop
CcriAPx02_1kP	481	9.49e-175	59..297	1..239
BgeAPx01	398	3.96e-142	59..287	1..229
GtuAPx02	391	2.34e-139	57..287	1..231
GfiAPx02	391	3.91e-139	57..287	1..231

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '2632' 'complement(join(356279..357172))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	356279..357172	892
complement(join(356279..357172))

Literature and cross-references CcriAPx02 ( CHC_T00008640001)

Literature	Collen,J. et al., Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida. Proc. Natl. Acad. Sci. U.S.A. 110 (13), 5247-5252 (2013)
Protein ref.	GenBank: XP_005711814. UniProtKB: R7Q263
DNA ref.	GenBank: NW_005178809.1 (357172..356269)
mRNA ref.	GenBank: XM_005711757.1
EST ref.	GenBank: CO652862.1 [3' end]
Cluster/Prediction ref.	Genebank: 17319513

Protein sequence: CcriAPx02 ( CHC_T00008640001)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	297
PWM (Da):	32408.34
PI (pH):	5.86

Sequence
Send to BLAST
Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MNAFVAPIAV LHAESLCTPS TALRRTTFVT PARTQSRLPT VFLPARRTPP TASLESDVRT ALNKLYDTTP CMPIMVRLAW HDAGTYKVAD GTGGANASIR YLPEKGHAAN NGLNIAMDLL EPIKAQFPAI SYADLYQLAS VVGIEHSGGP KVPFRMGRTD AGEADTTEDG RLPDADKRMG HLREVFYRMG LNDTEITVLS GAHTLGRAHQ DRSGFDGPWT KVPVVFDNSY FVEILKDEPD
PDLLRLSSDL ALLDIPETKA LCEKYANDQK AFFDDYILAH QKLSELGCFS TSNISSS

Retrieve as FASTA

Remarks

Partial sequence from genomic (no intron) and 1 EST.

DNA ►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

ATGAACGCTT TCGTCGCCCC GATCGCCGTC CTGCATGCCG AGTCGTTGTG CACCCCGTCC ACGGCCCTCC GCCGCACCAC CTTTGTCACC CCCGCTCGGA CCCAATCTCG TCTCCCCACA GTCTTTCTCC CTGCGCGACG CACACCTCCC ACCGCTTCCT TGGAATCTGA CGTGCGGACC GCCCTGAACA AGCTCTACGA CACCACGCCC TGCATGCCCA TCATGGTCCG TTTGGCCTGG CACGACGCCG GCACCTACAA AGTCGCCGAC GGCACAGGCG GCGCCAATGC CTCCATCCGC TACCTCCCTG AGAAGGGCCA CGCCGCCAAC AACGGTCTCA ACATCGCCAT GGATCTGCTC GAGCCCATCA AGGCCCAGTT CCCGGCCATT TCGTATGCAG ATCTCTATCA GCTCGCCTCC GTCGTCGGGA TAGAGCACTC TGGCGGTCCG AAAGTCCCGT TCCGCATGGG CCGCACCGAC GCCGGAGAGG CCGACACCAC AGAGGACGGC CGCCTCCCAG ACGCGGACAA GCGCATGGGC CATCTGCGTG AAGTCTTCTA TAGAATGGGC TTGAACGACA CAGAGATTAC CGTGCTTAGT GGCGCGCACA CCCTGGGCCG CGCGCATCAG GACCGATCTG GCTTTGATGG GCCGTGGACA AAGGTACCTG TCGTCTTTGA TAACTCGTAC TTCGTCGAGA TTCTTAAAGA CGAACCGGAC CCGGACCTGC TGCGTTTGTC TTCCGATCTT GCGCTTCTAG ATATCCCAGA GACAAAGGCG CTTTGTGAAA AGTACGCGAA CGATCAAAAA GCCTTTTTCG ACGATTACAT CCTAGCCCAC
CAGAAACTGA GTGAACTGGG ATGCTTCTCT ACTTCAAATA TTTCCTCGTC CTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

Retrieve as FASTA