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Entry information : MtPrx02 (Medtr5g074740.1[4.0] / Medtr5g074740.1[3.5] / Medtr5g082690.1[3.0])
Entry ID 266
Creation 2006-06-23 (Christophe Dunand)
Last sequence changes 2010-09-14 (Haythem Mhadhbi)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2014-07-15 (Christophe Dunand)
Peroxidase information: MtPrx02 (Medtr5g074740.1[4.0] / Medtr5g074740.1[3.5] / Medtr5g082690.1[3.0])
Name (synonym) MtPrx02 (Medtr5g074740.1[4.0] / Medtr5g074740.1[3.5] / Medtr5g082690.1[3.0])
Class Class III peroxidase    [Orthogroup: Prx010]
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Medicago
Organism Medicago truncatula (barrel medic)    [TaxId: 3880 ]
Cellular localisation N/D
Tissue types Root tips
Seedling roots
Seedlings
Inducers Insect damage (Spodoptera exigua, Meloidogyne, Aphib)
Nitrogen starvation
Pathogen interaction
Rhizobium inoculation
Sinorhizobium inoculation
Repressor Glomus intraradices infection
Best BLASTp hits
Perox score E-value MtPrx02
start..stop		 S start..stop
MtPrx70 644 0 1..322 1..322
MtPrx86 603 0 1..323 1..323
GmPrx40 509 0 1..321 1..329
GmPrx120 490 1.62e-176 6..321 5..323
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '266' 'complement(join(31760570..31761136,31761372..31761566,31762249..31762458))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 31762249..31762458 208 N° 2 31761372..31761566 193 N° 3 31760570..31761136 565  
complement(join(31760570..31761136,31761372..31761566,31762249..31762458))


exon

Literature and cross-references MtPrx02 (Medtr5g074740.1[4.0] / Medtr5g074740.1[3.5] / Medtr5g082690.1[3.0])
Literature Journet,E.P et al., unpublished
VandenBosch,K.et al., unpublished
Protein ref. UniProtKB:   G7KFK6
DNA ref. Phytozome 12:   chr5 (31762458..31760570)
Cluster/Prediction ref. Phytozome Gene 12:   31087850 UniGene:   Mtr.4408
Omic ref. Gene atlas:   Mtr.14639.1.S1_x_at Legoo:   Mtr.14639.1.S1_x_at
Protein sequence: MtPrx02 (Medtr5g074740.1[4.0] / Medtr5g074740.1[3.5] / Medtr5g082690.1[3.0])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   323 (300)
PWM (Da):   %s   35882.48 (33332.1) Transmb domain:   %s   i7-29o
PI (pH):   %s   9.34 (9.34) Peptide Signal:   %s   cut: 24 range:24-323
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MDSRIQFVLFVVTFATILSPTIAKLTPNYYDRICPKALPIINSIV
KQAIIREPRMGASLLRLHFHDCFVNGCDGSVLLDDTPTFIGEKTAFPNINSIRGFEVVDQIKEAVTKACKRDVVSCADILAIAARDSVAILGGKQYWYQVLLGRRDSRFASRDAANTNLPPPFFNFSQLITNFKSHGLNLKDLVV
LSGGHTIGFSKCTNFRDRIFNDTNIDTNFAANLQKTCPKIGGDDNLAPFDSTPNKVDTSYYKALLYKRGLLHSDQELFKGDGSQSDRLVQLYSKNSYAFAYDFGVSMIKMGNLKPLTGKK
GEIRCNCRKVNQI*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 5, introns 1 and 2) and 19 ESTs. AC123575 contain 4 peroxidases (MtPrx01, 02, 70, 86) and one pseudogene.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATTCTCGTATCCAATTCGTGCTATTTGTGGTCACTTTTGCAACAATTTTGAGCCCTACCATTGCAAAACTGACTCCAAATTATTATGACAGAATTTGTCCCAAGGCATTGCCAATC
ATAAATTCAATTGTTAAGCAAGCAATTATTCGTGAGCCACGCATGGGAGCATCATTGCTACGTTTGCATTTCCATGACTGCTTTGTTAACGTAAGTTTGTTAATTTCATAAATTTATGAT
GCTATTTCTAGAATCATTAAGTAAAGTCAATATAATGTACATTCTCTAAATAAAAATGTTTGTAAATTATTGTTTATGTTAGTTTTGAGTGTTTAAACTTTATTTTTTGATATTTCTTAG
TCCCCCAACCAAGCTACATGCATTTCTTTTACACATTATTATTCAAACAACGTATATGAAAAAATAAAAGTTAAATTGTTGAAGGAAAAATAAAATTAGTTTCTAAAGGAACATAAATTA
ATTCATTATTTTTGTAGTAGTATAACTATATATTTGAGCAAGGCAATATCTAATATGAATAGTGGATATTTTACTCTTCTATTGATGTTTTTATATCTAATAATCATGTCAAACAATTAG
GTATCAATGGTGCAAGTTTGCAAGAAAAGTAGTTGGGTTCATGTTGTACTCATGCAAGAGACTTAAACTTTTTTGTATACTCTCTATAGAATTAGATGTAAAAATACAACAATAATTTTT
TGAAGGAAAAATACAACAATAATTAAAAAGCGATAATTTTGTAACATGCTAAAATATAGATCCTTCTTTATTCAAAATTTATATTTCTATATTAATTTCAAACTTATTATGAGTTAAATT
ATAAGTGCATCATATTCATGTCACAAATACATATGAACAATTTCCATTATAGGGGGTTGTGATGGATCGGTTCTGCTAGATGATACCCCTACCTTCATTGGTGAGAAGACTGCATTTCCA
AATATCAATTCAATTAGAGGTTTTGAGGTTGTTGATCAAATTAAAGAAGCAGTTACCAAAGCTTGCAAACGCGATGTCGTATCATGCGCCGATATTTTAGCTATAGCTGCTCGAGACTCT
GTTGCCATTGTAAGTCTTTCAAATATTTTTCACTTCTAAACAAGGTTTTAATTTGTGTAACCACAGTTGTTTCAGAAAATATAAAAGATTTTGAGGTCTATATATAACCGCAATTTTGAA
TACATAGACTGCATTTAACCGGATCAAAACTGAAATTTCGAGTAGTATATTTTTTTTATTGGTGAATTTGGAGTAGTATATATAACCCTAGCAACTAAGAAATTTTGCTTTCATCATTTA
ACAGCTCTGGGTGGTAAGCAATATTGGTACCAAGTGTTACTAGGAAGAAGAGATTCAAGATTTGCAAGCAGGGATGCAGCAAATACAAATCTTCCTCCTCCATTTTTCAATTTCTCACAA
CTCATCACAAATTTCAAGTCTCATGGACTTAACCTTAAAGACTTAGTTGTTCTATCTGGTGGCCACACAATTGGATTTTCCAAATGCACTAACTTTAGAGACAGGATCTTCAATGACACC
AACATAGACACCAATTTTGCTGCCAATTTGCAAAAGACATGCCCTAAAATCGGCGGCGACGATAATTTAGCACCATTTGATTCTACACCTAACAAAGTTGACACATCATATTATAAGGCT
TTGTTGTATAAAAGGGGTCTTCTTCATTCTGATCAAGAGCTTTTTAAAGGTGATGGTTCTCAAAGTGATAGATTGGTTCAACTTTATAGTAAAAATTCTTATGCTTTTGCTTATGATTTT
GGAGTTTCTATGATTAAGATGGGTAACTTGAAGCCTCTTACTGGTAAAAAGGGTGAGATCAGGTGCAATTGCAGAAAAGTTAACCAGATATGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATTCTCGTATCCAATTCGTGCTATTTGTGGTCACTTTTGCAACAATTTTGAGCCCTACCATTGCAAAACTGACTCCAAATTATTATGACAGAATTTGTCCCAAGGCATTGCCAATC
ATAAATTCAATTGTTAAGCAAGCAATTATTCGTGAGCCACGCATGGGAGCATCATTGCTACGTTTGCATTTCCATGACTGCTTTGTTAACGGTTGTGATGGATCGGTTCTGCTAGATGAT
ACCCCTACCTTCATTGGTGAGAAGACTGCATTTCCAAATATCAATTCAATTAGAGGTTTTGAGGTTGTTGATCAAATTAAAGAAGCAGTTACCAAAGCTTGCAAACGCGATGTCGTATCA
TGCGCCGATATTTTAGCTATAGCTGCTCGAGACTCTGTTGCCATTCTGGGTGGTAAGCAATATTGGTACCAAGTGTTACTAGGAAGAAGAGATTCAAGATTTGCAAGCAGGGATGCAGCA
AATACAAATCTTCCTCCTCCATTTTTCAATTTCTCACAACTCATCACAAATTTCAAGTCTCATGGACTTAACCTTAAAGACTTAGTTGTTCTATCTGGTGGCCACACAATTGGATTTTCC
AAATGCACTAACTTTAGAGACAGGATCTTCAATGACACCAACATAGACACCAATTTTGCTGCCAATTTGCAAAAGACATGCCCTAAAATCGGCGGCGACGATAATTTAGCACCATTTGAT
TCTACACCTAACAAAGTTGACACATCATATTATAAGGCTTTGTTGTATAAAAGGGGTCTTCTTCATTCTGATCAAGAGCTTTTTAAAGGTGATGGTTCTCAAAGTGATAGATTGGTTCAA
CTTTATAGTAAAAATTCTTATGCTTTTGCTTATGATTTTGGAGTTTCTATGATTAAGATGGGTAACTTGAAGCCTCTTACTGGTAAAAAGGGTGAGATCAGGTGCAATTGCAGAAAAGTT
AACCAGATATGA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TTTGCTCAAA TTATAGTCTC ATATACACAA GCATAGAGTA AAATGGATTC TCGTATCCAA TTCGTGCTAT TTGTGGTCAC TTTTGCAACA ATTTTGAGCC CTACCATTGC AAAACTGACT  CCAAATTATT ATGACAGAAT TTGTCCCAAG GCATTGCCAA TCATAAATTC AATTGTTAAG CAAGCAATTA TTCGTGAGCC ACGCATGGGA GCATCATTGC TACGTTTGCA TTTCCATGAC  TGCTTTGTTA ACGGTTGTGA TGGATCGGTT CTGCTAGATG ATACCCCTAC CTTCATTGGT GAGAAGACTG CATTTCCAAA TATCAATTCA ATTAGAGGTT TTGAGGTTGT TGATCAAATT  AAAGAAGCAG TTACCAAAGC TTGCAAACGC GATGTCGTAT CATGCGCCGA TATTTTAGCT ATAGCTGCTC GAGACTCTGT TGCCATTCTG GGTGGTAAGC AATATTGGTA CCAAGTGTTA  CTAGGAAGAA GAGATTCAAG ATTTGCAAGC AGGGATGCAG CAAATACAAA TCTTCCTCCT CCATTTTTCA ATTTCTCACA ACTCATCACA AATTTCAAGT CTCATGGACT TAACCTTAAA  GACTTAGTTG TTCTATCTGG TGGCCACACA ATTGGATTTT CCAAATGCAC TAACTTTAGA GACAGGATCT TCAATGACAC CAACATAGAC ACCAATTTTG CTGCCAATTT GCAAAAGACA  TGCCCTAAAA TCGGCGGCGA CGATAATTTA GCACCATTTG ATTCTACACC TAACAAAGTT GACACATCAT ATTATAAGGC TTTGTTGTAT AAAAGGGGTC TTCTTCATTC TGATCAAGAG  CTTTTTAAAG GTGATGGTTC TCAAAGTGAT AGATTGGTTC AACTTTATAG TAAAAATTCT TATGCTTTTG CTTATGATTT TGGAGTTTCT ATGATTAAGA TGGGTAACTT GAAGCCTCTT  ACTGGTAAAA AGGGTGAGAT CAGGTGCAAT TGCAGAAAAG TTAACCAGAT ATGAATGAAG AAGGATAATG ATTGATTAAT TGTTTAATAT AAAGTTGAGG GAATTTTTTT ATATTTTCTA  TAAATTATCA AAATATGTTG ATTGTTGAGA ATAAGAATTC TAGGTTCAAA ACAGAATCTT GAATTGTCAA GGAGTCTGTT AAATGTGAGA TTTATTATTA TGTTTCATTT CAAAAGTATT 
AAGTTTTATT TGTGTGACTA TTTGGATTGT GATTATTGCT AAATGTTTAT ACGTATTAAA ATTTGCATGC TTTTTGTCCC ACTCAAATAA AAATTAATTA GTATTGCTTG CTTCC 

Retrieve as FASTA