View Redoxidase 2706

Entry information : SbPrx89 (Sobic.006G003200.1 [2.1] / SB06G000490 [1.4])

Entry ID	2706
Creation	2006-01-12 (Christophe Dunand)
Last sequence changes	2011-01-27 (Toky Ramarohetra)
Sequence status	complete
Reviewer	Messaoudi
Last annotation changes	2014-08-04 (Messaoudi)

Peroxidase information: SbPrx89 (Sobic.006G003200.1 [2.1] / SB06G000490 [1.4])

Name (synonym)

SbPrx89 (Sobic.006G003200.1 [2.1] / SB06G000490 [1.4])

Class

Class III peroxidase [Orthogroup: Prx016]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum

Organism

Sorghum bicolor [TaxId: 4558 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SbPrx89 start..stop	S start..stop
SiPrx58	449	1.74e-160	7..309	33..329
TaPrx211-1D	413	5.21e-146	5..309	36..335
TaPrx211-1A	413	5.29e-146	4..309	43..343
OsPrx52	389	7.72e-137	10..311	35..332

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '2706' 'join(509568..510503)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	509568..510503	934
join(509568..510503)

Literature and cross-references SbPrx89 (Sobic.006G003200.1 [2.1] / SB06G000490 [1.4])

Literature	PlantGDB
DNA ref.	Phytozome 12: chromosome_6 (509568..510503)
Cluster/Prediction ref.	PlantGDB: SbGSStuc11-12-04.4779.1

Protein sequence: SbPrx89 (Sobic.006G003200.1 [2.1] / SB06G000490 [1.4])

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	311
PWM (Da):	33372.3
PI (pH):	4.51

Sequence
Send to BLAST
Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MAAIVVDALD AGYYATTCPD AEAIVEDAMS RLHYTDPTLS PAIIRMLLHD CFVRGCDASV MIVPTPPLHH PATSSERTAV PNHTLRGFTA VDAVKRAVDD ACRGVVSCAD VLALMARDAV VLLGGARYDV ALGRRDGTVS NPDEVDLPAP FAKLADVLDY FAARGFSAEE TVVLFGAHTV GGAHCSSFRY RLTGGPGDGT MDETLRRDML DECGAEELPL ETDPAVFFDP DSPFAVDNNF
YRQLMSNRTL LQVDQEAAVN PSTAPHVAYY AANPDAFVRR FSEVMAKLSN VGVLEGDAGE VRKLCSRYND T

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 6, no intron). Sequencing error: extra G just before the SCA which induce a frame shift. No EST.

DNA ►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

ATGGCGGCGA TCGTCGTCGA CGCTCTAGAC GCGGGCTACT ACGCAACGAC ATGCCCGGAC GCAGAGGCGA TCGTGGAGGA CGCCATGTCG CGGCTCCACT ACACGGACCC AACCCTATCT CCGGCCATCA TCCGGATGCT GCTCCACGAC TGCTTCGTCC GCGGCTGCGA CGCCTCCGTC ATGATCGTGC CCACGCCGCC GCTCCACCAC CCGGCGACCT CCTCCGAGCG CACCGCCGTC CCCAACCACA CGCTCCGCGG CTTCACCGCC GTCGACGCCG TCAAGCGCGC GGTCGACGAC GCGTGCCGCG GCGTGGTGTC CTGCGCCGAC GTGCTGGCGC TCATGGCGCG CGACGCCGTC GTGCTCCTGG GCGGCGCACG CTACGACGTC GCGCTGGGGC GGCGTGACGG GACGGTTTCG AACCCCGACG AGGTCGACCT GCCCGCGCCG TTCGCGAAGC TCGCCGACGT TCTGGATTAC TTCGCCGCTA GGGGTTTCTC GGCCGAGGAG ACCGTCGTGC TCTTCGGCGC ACACACCGTC GGCGGCGCGC ACTGCTCCTC GTTCCGGTAC CGTCTCACCG GAGGACCTGG CGACGGTACC ATGGACGAGA CGCTCCGCCG CGACATGCTC GACGAGTGCG GCGCCGAGGA GCTGCCGCTG GAGACCGACC CGGCCGTGTT CTTCGACCCG GACTCGCCGT TCGCCGTCGA CAACAACTTT TACAGGCAGC TGATGAGCAA CCGGACGCTG CTGCAGGTGG ATCAGGAGGC CGCCGTCAAC CCCAGCACCG CGCCGCACGT CGCCTACTAC GCCGCCAACC CCGACGCGTT CGTGCGGAGG
TTCTCTGAGG TCATGGCCAA GCTCAGCAAC GTCGGCGTGC TCGAGGGCGA CGCCGGTGAG GTCAGGAAGC TCTGCTCAAG GTACAACGAC ACTTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

Retrieve as FASTA