View Redoxidase 2725

Entry information : SbPrx[P]38 (Sobic.002G391500.1 [2.1] / SB02G040690 [1.4])

Entry ID	2725
Creation	2010-01-11 (Christophe Dunand)
Last sequence changes	2011-01-28 (Christophe Dunand)
Sequence status	theoretical translation / pseudogene
Reviewer	Messaoudi
Last annotation changes	2014-08-06 (Messaoudi)

Peroxidase information: SbPrx[P]38 (Sobic.002G391500.1 [2.1] / SB02G040690 [1.4])

Name (synonym)

SbPrx[P]38 (Sobic.002G391500.1 [2.1] / SB02G040690 [1.4])

Class

Class III peroxidase [Orthogroup: Prx077]*

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum

Organism

Sorghum bicolor [TaxId: 4558 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SbPrx[P]38 start..stop	S start..stop
SiPrx134	530	0	109..458	4..353
ZmPrx78	483	2.45e-170	158..458	84..391
SbPrx37	478	9.78e-169	157..457	57..364
ZmPrx30	479	1e-168	158..458	84..391

Literature and cross-references SbPrx[P]38 (Sobic.002G391500.1 [2.1] / SB02G040690 [1.4])

Literature	Plant Genome Database.
DNA ref.	Phytozome 12: chromosome_2 (74596348..74589874)
Cluster/Prediction ref.	PlantGDB: SbGSStuc11-12-04.44354.1

Protein sequence: SbPrx[P]38 (Sobic.002G391500.1 [2.1] / SB02G040690 [1.4])

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	458 (437)
PWM (Da):	48631.2 (46618.1)	Transmb domain:	i7-24o
PI (pH):	7.7 (7.44)	Peptide Signal:	cut: 22 range:22-458

Sequence
Send to BLAST
Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MMIAAKLAVV AVLALLGSAS CRQAGFGNGN GARGGITQPP NHPPAPATTP KPKPPASLDR PASPHPHPQP PSYPPATLQQ PTYSPKTSPS PPPPPPTPTY PPTSQGPPVT TPAYPPTSSS PPPPTVTPTY PPSSPSPPPP TPPPPPPSRP PPSSADAGKK LKVGYYENKC NRSVDVEAIV RKHVSGFDDG TKAGLIRLFF HDCFIRGCDA SVLLDPTSTN QQPEKLGIPN FPSLRGYEVI DAAKDELEKA CPGKVSCADI VAFAARDASY FLSGGRISFD MPAGRYDGNV SLASETLPNL PPPFAGFDQL EKMFADKGLD AFDMVTLSGA HSIGRSHCSS FSRDRLPPSS TSDMDTAFAA
KLQASCASAN GTDDNTVMQD YKTPDTYQNV LDRKVLFTSD AALTSDDMAN NLVRVYAIFP WLWEDKFAEA MVKMGRIEIK TDTAGEIRKR CRVVNSKP

Retrieve as FASTA

Remarks

Complete sequence from genomic (chromo 2, intron 1). No EST. Frame shift between DDLPER-YQNVL and missing sequence . Probably extra 5' introns.

DNA ►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

ATGATGATTG CCGCTAAACT CGCTGTTGTC GCAGTGCTCG CACTGCTTGG TTCTGCATCA TGCCGCCAGG CAGGTTTCGG TAACGGTAAT GGCGCCCGTG GCGGCATCAC ACAACCACCC AATCACCCTC CGGCTCCGGC CACGACACCA AAACCGAAGC CGCCAGCTTC TCTGGATCGT CCGGCCAGCC CACACCCACA CCCACAGCCA CCCTCTTACC CTCCGGCCAC ACTGCAGCAA CCCACCTATT CTCCGAAGAC GAGCCCAAGC CCGCCGCCAC CGCCGCCCAC TCCCACCTAT CCTCCGACGA GCCAAGGCCC GCCGGTGACC ACGCCCGCCT ATCCTCCAAC GAGCTCAAGC CCGCCGCCAC CCACGGTCAC GCCCACCTAT CCTCCATCGA GCCCAAGCCC GCCGCCACCC ACGCCGCCGC CGCCGCCGCC GTCCCGGCCT CCGCCCAGCT CAGCTGATGC TGGGAAGAAG CTCAAGGTTG GATACTACGA GAACAAGTGC AACCGGTCCG TGGATGTGGA GGCCATCGTG AGGAAGCACG TCAGTGGCTT CGACGATGGC ACCAAAGCAG GGCTCATCCG CCTTTTCTTC CACGACTGCT TCATCCGCGT AAGTCTATTA TTAAGACTTA AGAGTTAAGA CTGTAAAACG AGATGGGTTA ACGAGGTTGC CCTTCCAGGG TCCTCGGCTT CGTGTTATAT AGGGAGAGAA CAGCCTTCTC CATGGCGTTT ACAACAAGAT AGATTATATT GGTTGGATCT CAACAAGCCC ACTTGTACAA CAATCCAAAC CTACACAATG AATCTAGACA CCAGATCCTA ACCGAAAGGA TTAGCATCGT TTAACATCCC CTCTCAATCT CAGCCACACT TGAGGTTGAG ATTGTTTCTG AAGATCCGAA ACTTAACAAT AGGCAATGCC TTTGTAAACC CATCAGCTAG CTGATCATCA GTGTGAACAA AGCGAATCTC CAGCAGTTTT TGGGCCATTC GTTCATGAAC AAAATGAAAA TCTATTTCAA TGTGCTTTGT ACGAGCGTGA AATATAGGAT TAGCAGATAG ATAGGTGGCT CCAAGATTAT CACACCAAAG CCTTGCCTTG GGGGGATGCG GTATTCTGAG TTCACTCAAG AGTTTCTGAA CCCATAGCAC TTCTGCCGTA GCATTGGCTA AAGATTTGTA TTCAGCCTCT GTACTGGACC TTGATACTGT TGGCTGCTTC TTTGCTCTCC ATGAAATCAG ATTATCACCC AGAAATACCG CAAAACCACC AGTCGACCTT CGATCATCAA CACAGCCTGC CCAGTCCGCA TCAGAGAACG CACTGACCAC CATAGACAAT GACTTCCTGA TACAAAGCCC CATATTTGTG GTGCCACGCA CATATCGCAG GATCAACGCA CTGACCACCA TAGACAATGA CTTCCTGATA CAAAGCCCCA TATTTGTGGT GCCACGCACA TATCGCATGA TCCTCTTCAC GGCACTCCAA TGAACTGTAG TTGGCGCTTG CAAAAACTGA CATACTTTGT TTACAGCGAA AGCAATATCA GGTCGAGTTA AGGTTAAATA CTGCAAGGCT CCTACCATGC TCCGGTATTT TGTGCAGTCA TCCGGACCAA GCTTGTCACC TGTTTCAAGA CTAAGTTTTT CTGAGTATGA TAGAGGAGTC TCAATAGGCT TACATTTTTC CATACCTGAC CGCTTGAGAA TATCATTTGC ATACCGTTCT TGGGTGAGAG TCAAACTGTT ATTTCCCCTC TTGACCTCAA TCCCCAAGAA ATAGTGCAAA TCCCCTAGAT CCTTCAAGGC AAAATCCTTC TGTAAGTCAG ACAACAGAGC TTGAGTAGCT GAGGTAGAAG AGCTGACAAC GATGATATCA TCAACATACA CCAACACGAA CAAAGTATGC CCGCCTCTGG AGTAATAGAA CAAAGAAGTA TCAGTTTTAG ATGGGACAAA ACCAAGATGT TCCAGCTTGG AACACAGCCG AGCATACCAA GCACGAGGTG CTTGCTTAAG ACCATAAAGA GCCTTGTCCA GTTTGCACAC AAAGTCAGGG CGTCGTGGAT CAACATAACC GGGTGGCTGA TACATGTACA CTTCCTCATT AAGCACACCA TGAAGGAATG CATTTTGAAC ATCAAGCTGC CGCAACGACC ACCCTCGTGA CACAGCTATA GACAAGATAA TCCGAATGGT AGCAGCTTTG ACAACAGGAC TAAAAGTGTC CTCATAGTCC AAACCATACC GTTGTTTGTA CCCTTTTGCA ACTAGTCGTG CCTTGTATCT GTCAAGTGAG CCATCAGCAC GTCGTTTTAT TTTGTAGACC CACTTGCAAT CAGTAACGTT TTTCCCTTTG GGAAGTGGAA CCAAATGCCA CGTCTTATTA CGAAGCAATG CATCATGTTC TGCATCCATG GCCATTTTCC ACTGAGGGTC TTGCAAAGCA TCACGGATTG TAGTGGGTTC TTCTGCAGAT GTGCTAGCAA GTTGACACCA TCTCACTGTA CCATCTGTGT ATTGTTTTGG TTTACTGATC CCATGTTGTC CTCGAGTAAC AGGGCGGTGA GCAGCAGGTA ACCCAGGTAT GACACCATCT GGAACAGGCA CAGAAGATCC CAGAGCACCC ACATCTGATC CGCCCACCAA ATCAGCATGG GGAGCTGAAG CCGCCGAGTC ACCAGAGGGG CTGGGAAGCC TGCGGAGTTT CACGGCGTGC TCCTGACTCG TGCTCGGCGT GGAGTGGCGC AGAAGATCCG TCAGCGGAGG AAGACGACGC AGACGGCTCG ACGCTCGGGG TGGATTCGCC TGCGGGAACC CCTGAGTGTT CAGGCGCATC AACCTGGGAT CGCCCGCTGC TCCCTTCTGG CGGACACATG AAATATGGAG CATGGGAGGA CTGCACACCT CCGTTTGTTT CTGAATTTTC ACCTGTTTTC TCACCTGCAC CAGATGTATC TCCCGGGGAA CAGTGTGAAG CATTAGTAGG CAAAGGAGCA AACAAACTAT GATCAGATGC ATGCATACCC CCAGGATTTA GGAGGACATC AGGAAGGAGA GAAAGCTCGG CTCGCAATTG TGCACCAGCG TTGGGATGAA GGGAAGATAA AGGAAACACA TGCTCATCAA AAACGACATC GCGTGAGATG TATACTCGAC CTTCCTTGGG ATCCAGGCAC TTAAACCCCT TGTGCTGGTT GCTATACCCT AGAAAGACAC ATTGCTTAGA GCGAAAATCA AGTTTCCTTG TATTATAAGG CCGTAAGTGA GGCCAGCAGG CGCAGCCAAA GGTTCGAAGG GAGGAGTAAT CAAGTTGTTG ACCAAAGAGA CGGGAGTAGG GTGTATCATT GTCTATGATA CGTGAGGGCA GCCGGTTTAT GATGAAAACA GCTGTGCTAA AAGCTTCATC CCAAAATTTT AATGGCATGG AGGCGTGTGC TAACAAGGTG AGCCCCATTT CAACTATGTG GCGATGCTTC CGCTCAGCAG ATCCATTTTG CTGATGTGCA TGAGGACAGA AAACATCGTG AGAAATCCCC ATGCGTGTAA AAAAGGAACT CAAGGCTTGG TATTCCCCAC CCCAATCTGT TTGCATTGTG CGGATTTTCC GATCAAACTG CCTTTCAACA AGACACTGGA AGTTTTTTAA GCATTGAAAA ACTTCAGATT TTTGGCGTAA CAAATAAATC CAAACAAATT TACTATAATC ATCAATAAAC GACACATAAT AATTGTTTCA GTCAACAGAG GTTGGGGCAG GTCCCCATAC ATCAGAAAAC ACTAGATCTA GAGGACTAGA AGAAGTACTC GTGGACCTAG GATATGGAAG CTGGTGACTT TTACCCCTCT GACATGCATC ACAAACACTA GTTTTATTGG ACTCTTTGAT GAAAGGAAGC TTGTGGCGAT GAAGAACTTG TTGGACTATG GCAGTAGATG CATGTCCTAG ACGATGATGC CACAAGGAGG TAGTTGGCTT GGTTACTCCA AGCACTTCTT TATTCAATGG CTTGACTGGG TAGAGGCCAT TCTCACACGC CCCTTTGAGG AGTGTTTTCT TCGTCGACTG TTCCTTAACA AGAAAATGAT CAGGGTGAAA TTCGAGGAAA ACATTATTGT CTCGAGCAAT GCGGTTTACA GAAACAAGAT TTTTATTTGC ACAAGGAACA TGAAGAATGT TATGTAACGA GAGTTTAGTG GAAGGGGCAT GCAAGACACC ATGACCAATG TGTTTGATCT CCATACCTGA GCCACCGGCA GTATGGATCT GGTTCCCGCC GTGATAGCGA TCACGGACAT TGAGCTTGTC CAGCTCTGAA GTTATGTGGT CAGTTGCCCC AGTATCCATG TACCAGTTGC TGTCCACACC ATAGCTTGCC GTTGCCGATG ACGCTGACTT TTGTGGAGGC AGGAAGGTCG CGTCGAACCT TTTGAAGCAT GCGACAACGG TGTGCCCCTC CTTCTTGCAC AGCTGGCAGT AGACGCCAGG CTGAAAGGGC TGGCGCCTCT GGTTGTTTGG CCCGCCGCGA CCTCCCCTTG GGCCACGGCC GAAACCACCG CGGCCGCCTC CACCGCGACC ACCACCACTG CTTCCCGCCG TTGCGGTTTT GGTGGGAGCC GGTGTTGGAG CCAGAGTCGC GACTCCACTT GGCAGCAATG TTTGCAGAGG ACTGGTTGCT GCCTCCATCA CGGATCTCAA TCCGTTGCTC GTGGCTCACG AGCTGAGTAT ACAGCTGTGT CATGGTGATC GGTTCCACGC GCGCGGTGAC CGCGGTGACC ACCAGGTCGT AGTCACGATC GAGGCCGATG AGGATGAAGG AGACAAGCTC CTCATCCTCC AACTTCTTGC CAGCAGACGT CATCTCATCT GCCAAGTGCT TCATCTTGCC AAAATAGTCA GAAATTGACG AGGTACCTTT TGAGGCGGTG GCGAGGGCCA TCCTGGTGGC AATGACGCGC GCCCGGGAGT GCGACGAAAA CAACCCTTCA GTGGTTGCCC AGCAGCGGAT GCGGTGACTT CATGATTCAC CTGCCCAAGG ATTTCCTTGG ACATATTGGA GAGAAGGTAG TTCAGCACTT GCTGATCCTT CGCTATCCAG ATCTCATATT CTGGATTGAT CGCAGGCGGC TCCTTGGAGT CAATCTGCGT TCCTGGCTTG GTTTCCAAGA ACTTGGACGG TGGCTCCGCC CCTGGGAGGA TGTACTTGCC GAGCTGATAG CCATTCAGCG CCGACACGAC TTGGGCTCTC CATGAGGCAA AATTTGCCTT GGTAAGCTTC TCGTTGGTGG GGAGAAAGGT GATTGGGTAG TAGGTAGCAG CAAGCGCGGA GGAAGGAGTA GCCATGGAGT AATTCCGTTA GGAAGAAGGC TCTGGTACCA TGTAAAACGA GATGGGTTAA CGAGGTTGCC CTTCCAGGGT CCTCGGCTTC GTGTTATATA GGGAGAGAAC AGCCCTCTCC ATGGCGTTTA CAACAAGGAC AGATTACATT GGTTGGATCT CAACAAACCT ACTTGTACAA CAATCCAAAC CTATACAATG AATCTAGACA CCAGATCCTA ACCGAAAGGA TTAGCATCGT TTAACAAAGA CCTCGATCAT GCTTGCCATT CAGTGAATCA CTACGTATGT ATATATGATT AGTAGCTGAT CGAGGACAAT TAATATACAT GCACGGTGAC TGTGATCGAT GCATGGCGGG TTCAGGGTTG CGATGCCTCC GTTCTGCTCG ACCCGACCAG CACCAACCAG CAGCCGGAGA AGCTCGGCAT ACCCAACTTC CCTAGCCTGC GCGGCTACGA GGTGATCGAC GCGGCCAAGG ACGAGCTCGA GAAGGCATGC CCCGGCAAGG TCTCGTGCGC GGACATCGTC GCCTTCGCCG CCCGCGACGC GTCCTACTTC CTCAGCGGCG GACGCATCAG CTTCGACATG CCCGCCGGCC GCTACGACGG GAATGTGTCC CTCGCCAGCG AGACCCTGCC GAACCTGCCC CCGCCGTTCG CCGGCTTCGA CCAGCTCGAG AAGATGTTCG CCGACAAGGG GCTCGACGCT TTCGATATGG TCACTCTCTC CGGCGCGCAC AGCATCGGCC GCTCCCACTG CTCGTCCTTC AGCAGGGACC GCCTCCCGCC CAGCAGCACC TCGGACATGG ACACGGCGTT CGCCGCCAAG CTGCAGGCGA GCTGCGCGTC GGCCAATGGC ACCGACGACA ACACGGTGAT GCAGGACTAC AAGACCCCCG ACACCTACCA GAACGTGCTG GATCGCAAGG TTCTCTTCAC GTCGGACGCT GCGCTCACCT CGGACGACAT GGCGAACAAC CTGGTGCGTG TCTACGCGAT CTTTCCATGG
TTGTGGGAGG ACAAGTTCGC GGAAGCCATG GTGAAGATGG GCCGCATCGA GATCAAGACG GACACCGCCG GGGAAATCAG GAAGAGGTGC CGCGTGGTCA ACAGCAAACC ATGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

Retrieve as FASTA