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Entry information : SbPrx21 (Sobic.001G444700.1[2.1] / Sb01g041790[1.4])
Entry ID 2757
Creation 2008-11-19 (Christophe Dunand)
Last sequence changes 2011-01-24 (Toky Ramarohetra)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx21 (Sobic.001G444700.1[2.1] / Sb01g041790[1.4])
Name (synonym) SbPrx21 (Sobic.001G444700.1[2.1] / Sb01g041790[1.4])
Class Class III peroxidase    [Orthogroup: Prx153]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx21
start..stop		 S start..stop
ZmPrx17 563 0 24..331 23..329
SiPrx151 527 0 18..331 26..339
TaPrx160-1D 499 1.04e-179 21..331 27..335
TaPrx160-1B 493 2.15e-177 21..331 27..335
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '2757' 'complement(join(65039562..65039989,65040121..65040283,65040402..65040593,65040703..65040915))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 65040703..65040915 211 N° 2 65040402..65040593 190 N° 3 65040121..65040283 161 N° 4 65039562..65039989 426
complement(join(65039562..65039989,65040121..65040283,65040402..65040593,6504070 3..65040915))


exon

Literature and cross-references SbPrx21 (Sobic.001G444700.1[2.1] / Sb01g041790[1.4])
Literature Plant Genome Database
DNA ref. Phytozome 12:   chromosome_1 (65040900..65039562)
Protein sequence: SbPrx21 (Sobic.001G444700.1[2.1] / Sb01g041790[1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   331 (308)
PWM (Da):   %s   35283.35 (33187.2)  
PI (pH):   %s   4.8 (4.89) Peptide Signal:   %s   cut: 24 range:24-331
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAVPAMAVAALFALAALGGVAEAQQLSTAYYDGSCPHVYDTVRRV
VQEARASDPRILASLLRLHFHDCFVNGCDASLLLDETPTMRSEKAADPNNGSARGFPVVNDIKAALENACPGVVSCADILALAAEVSVELAGGPYWRVMLGRRDGMTANFDGAQDLPNPKEALNDLKQKFADLGLDDTDFVALQGA
HTIGRAQCTSFQDRLYNFSGTERADPTLDRSYLAALRESCPAAVSGGNTRLNNLDPATPDTFDNHYYANIQSNRGLLRSDQAMLSATEEGAASTTPIVARFADSQTEFFKSFATAMIKMG
NIAPLTGGMGQVRRDCRVVN

Retrieve as FASTA  
Remarks Complete sequence from genomic (Chromo 1, 3 introns). No EST.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGTCCCGGCGATGGCCGTAGCAGCCCTGTTCGCCCTCGCGGCGCTGGGCGGCGTCGCGGAGGCGCAGCAGCTGAGCACCGCGTACTACGACGGCTCGTGCCCGCACGTCTACGAC
ACGGTGCGGCGCGTGGTCCAGGAGGCGCGCGCCTCCGACCCGCGCATCCTCGCCAGCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAATGTACGTGCACGCCACGCCGCCCCATGC
ATGGCGGTAGCTGCCAAAGCCGTGTGTGCCAGAGAACCGATCTGACTCTGAACGGTGCTCGATTGATCGTGTGCTCGTGCAGGGGGTTGTGACGCGTCGCTGCTGCTCGACGAGACCCCG
ACGATGCGCAGCGAGAAGGCAGCCGACCCCAACAACGGCTCCGCGCGGGGGTTCCCCGTGGTGAACGACATCAAGGCCGCCCTGGAGAACGCCTGCCCAGGCGTCGTCTCCTGCGCTGAC
ATCCTCGCCCTGGCCGCCGAGGTCTCCGTCGAGCTGGTTAGTGCTCTGACACGACATATATAGACGGTGCGAAGTTACCGTCGATCGAGAGCAACACTGCGGCTAGGGATCACTACTAAT
TATGCCGTTTTCCTGACTGGATATATATGAGCAGGCGCAGGAGGTCCGTACTGGAGGGTGATGCTGGGCCGGAGGGACGGCATGACGGCTAACTTCGACGGCGCCCAGGACCTCCCAAAC
CCGAAGGAAGCATTGAACGATCTGAAGCAGAAGTTCGCCGACCTCGGCCTCGACGACACCGATTTTGTTGCCCTCCAAGGTATTCTCATCTAGCACACGGAACCACACACACACACACAC
GCACACACACAACCGAAACTCAAGTATGTGCGGCCACCTGCTGAGCTCAAATCAAAATCAAATGTTGACGTGCCTCGTTGCACCATGCAGGGGGGCACACACGATCGGCCGCGCCCAGTG
CACGTCCTTCCAGGACAGGCTCTACAACTTCAGCGGCACGGAGCGGGCGGACCCGACGCTGGACCGGTCCTACCTCGCCGCGCTCCGGGAGAGCTGCCCGGCGGCGGTGAGCGGCGGCAA
CACGCGCCTGAACAACCTCGACCCGGCCACGCCGGACACGTTCGACAACCACTACTACGCCAACATCCAGAGCAACCGCGGCCTGCTCAGGTCCGACCAGGCGATGCTCTCCGCGACGGA
GGAGGGCGCGGCGTCCACCACGCCGATCGTCGCGCGGTTCGCCGACAGCCAGACCGAGTTCTTCAAAAGCTTCGCGACGGCCATGATCAAGATGGGGAACATCGCGCCCCTCACCGGGGG
AATGGGGCAGGTCAGGAGGGACTGCAGGGTGGTGAACTGA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGTCCCGGCGATGGCCGTAGCAGCCCTGTTCGCCCTCGCGGCGCTGGGCGGCGTCGCGGAGGCGCAGCAGCTGAGCACCGCGTACTACGACGGCTCGTGCCCGCACGTCTACGAC
ACGGTGCGGCGCGTGGTCCAGGAGGCGCGCGCCTCCGACCCGCGCATCCTCGCCAGCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCAATGGTTGTGACGCGTCGCTGCTGCTCGAC
GAGACCCCGACGATGCGCAGCGAGAAGGCAGCCGACCCCAACAACGGCTCCGCGCGGGGGTTCCCCGTGGTGAACGACATCAAGGCCGCCCTGGAGAACGCCTGCCCAGGCGTCGTCTCC
TGCGCTGACATCCTCGCCCTGGCCGCCGAGGTCTCCGTCGAGCTGGCAGGAGGTCCGTACTGGAGGGTGATGCTGGGCCGGAGGGACGGCATGACGGCTAACTTCGACGGCGCCCAGGAC
CTCCCAAACCCGAAGGAAGCATTGAACGATCTGAAGCAGAAGTTCGCCGACCTCGGCCTCGACGACACCGATTTTGTTGCCCTCCAAGGGGCACACACGATCGGCCGCGCCCAGTGCACG
TCCTTCCAGGACAGGCTCTACAACTTCAGCGGCACGGAGCGGGCGGACCCGACGCTGGACCGGTCCTACCTCGCCGCGCTCCGGGAGAGCTGCCCGGCGGCGGTGAGCGGCGGCAACACG
CGCCTGAACAACCTCGACCCGGCCACGCCGGACACGTTCGACAACCACTACTACGCCAACATCCAGAGCAACCGCGGCCTGCTCAGGTCCGACCAGGCGATGCTCTCCGCGACGGAGGAG
GGCGCGGCGTCCACCACGCCGATCGTCGCGCGGTTCGCCGACAGCCAGACCGAGTTCTTCAAAAGCTTCGCGACGGCCATGATCAAGATGGGGAACATCGCGCCCCTCACCGGGGGAATG
GGGCAGGTCAGGAGGGACTGCAGGGTGGTGAACTGA

Retrieve as FASTA