View Redoxidase 3038

Entry information : BrPrx12-1Ab_other (Bra016127)

Entry ID	3038
Creation	2008-01-04 (Christophe Dunand)
Last sequence changes	2014-04-08 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2014-04-08 (Christophe Dunand)

Peroxidase information: BrPrx12-1Ab_other (Bra016127)

Name (synonym)

BrPrx12-1Ab_other (Bra016127)

Class

Class III peroxidase [Orthogroup: Prx005]

Taxonomy

Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica

Organism

Brassica rapa [TaxId: 3711 ]

Cellular localisation

N/D

Tissue type

Etiolated seedlings

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	BrPrx12-1Ab_other start..stop	S start..stop
ThPrx12	684	0	1..362	23..385
TsPrx12	684	0	1..363	1..364
BoPrx12_other	679	0	1..332	1..332
BrPrx12-1Aa_other	678	0	1..363	1..363

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '3038' 'join(19296320..19296598,19297700..19297894,19298085..19298699)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	19296320..19296598	277	N° 2	19297700..19297894	193	N° 3	19298085..19298699	613
join(19296320..19296598,19297700..19297894,19298085..19298699)

Literature and cross-references BrPrx12-1Ab_other (Bra016127)

Literature	Ryu,S.H., Kang,J.S., Kang,C.-h., Kim,C.Y., Choi,Y.J., Lee,S.-H., Bahk,J.D., Lee,S.Y., Cho,M.J. and Lim,C.O. Expressed Sequence Tags of Chinese Cabbage Etiolated Seedling cDNA, Unpublished (2001).
DNA ref.	GenBank: CW978963 Phytozome 12: A07 (24108710..24110710)
EST ref.	GenBank: EX132867 [5' end] EX034292 [3' end]
Cluster/Prediction ref.	UniGene: Bra.1663

Protein sequence: BrPrx12-1Ab_other (Bra016127)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	362 (331)
PWM (Da):	39749.44 (36267.4)	Transmb domain:	i9-31o
PI (pH):	8.4 (8.21)	Peptide Signal:	cut: 32 range:32-362

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MGKDLSRRVLTFLILISLLAVAMNLLSTVEAQNKKKPRRDVPLVKGLSWSFYQKACPKVESIIRKELKKVFKRDIGLAAAILRIHFHDCFVQGCEASVLLDGSASGPGEQSSIPNLTLRQ
AAFVVINNLRALVHKQCGQVVSCSDILALAARDSVVLSGGPDYAVPLGRRDSLAFASQNTTLNNLPPPFANASQLIADFANRNLDINDLVALSGGHTIGIAHCPSFTDRLYPNQDPTMNK
SFANNLKRTCPTANSSNTQVNDIRSPDVFDNKYYVDLMNRQGLFTSDQDLFTDKRTRGIVESFAIDQKLFFDHFVVGMIKMGQMSVLTGSQGEIRANCSARNTESFMSVLEEGILEEALS
MI*

Retrieve as FASTA

Remarks

Complete sequence from genomic (introns 1 and 2), 23 ESTs (from Brassica rapa subsp. pekinensis) and 1 GSS.

Promoter►
Send to BLAST
Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

TGAACCAATT CTCTTTTGTT ATAATGCCCT TTTAAAATGA GATAACATAA AAATGACTAT CTTCGTTTTA ACGATTTTAA TTAATAAATT TCAAACAATT CCTCTATAGA AAAATAATGG ATGTTCAAAT CCAACTACTC CCTCTGTTGT CCTTAACACA AATAAAGCAG CAAAGAGAGC GTAGCTTGGA CCCCTAGAAA AATATATTGT ACTTTTAGTA GTGATTGTAA TCATATCTTT TCTTGATGAT ATGATTTTTT TATATAGATT ATAATCTACT TACTACAGAA AAGAGAATAC AAACTTATTT TGATAGTAGT TTGATAAAAA AAAAACTTAT TTTGATAATT TATTCAACAA TTACACACAT TTATGGAGAC GAACTTGCTT TTTCAATTAT ATGCAAAAAA ACATGTCAAA TTCTGGGTGT AACGTATATC CAATGAATAA TAGGAAAGAG AGAGCAGAGA GGAACGTGGC GAACACAACT AAAAGGAGTC CTCAAATACA TACAGATGTC AGGTCCTGTG GAACATACTT GTTTGGTGTA CAATCATATG TGCTCACTTT GCATTAGGAT GTTCAAACGT CAATGTCTTT CATCCTTTTT GGTTATCTCA AATTGTCCCA CCACCTCTGC AAAGTCACAT ACTCACCATC TTCGACTCTT CGTAAACCAT TTACGATCAT CAAGTGCCTT AACGAATATG CCAAAACAAA GACATTATTC CACTGTCATG AGCTTTATTC CTAAAGTGGA TCAAATATGT GTTGGCCTTT CATACCGACA AAATCATTTT CTTAAGTGAA CACATTATGG TTGGTTAAAA TTTATACTGG TTTCGTACGT AATATGTATT TTGAACTTGT AATATATTAG CTAGTTAAAC AAATTAACTT ACCTGTAAAT CCAAAAAATG TTAACTAAAA AGTAATATTA TTACGTAACA TTTTAGTTTA ATATATTGTG TTTACCACGC ATTGACAAAA TAAGTTATGT GATATACTTG TCGGTGATAG TATTTGTTGC CTTTGGATTC TATCTAAGAC TTTCGTTGCG CCGCGGTATT ATTTTCCGTG GTCCCGTTCA TAACAATCCA AATTGCATGC CACTAACTCG TATACTTTGA CACTATACGC ACATCTTAAT TTTCAAATTA ATGTACCACT ATATATATGT GTACCCACAT AGGTAGATAA TTTGAATCTT ACACTAATCT TTTATGTTTA TAAGTACTGT TCATTTTTGT ACTTGTGAAA TGATCTGAAT GATGAAATTA TCTCCCTAAA ACATAGCACA TGGGTTTTAA ATTGAGGTTC AATAGCGCTG GGACAAGACC CTTTAAACGG TTAGGTTGCA GACCAATTAT TATTTATAAC ATCAAAAACA AAAAATTCAC GCGACTATAA GTAGTAAAAT TAAATAGTTT TTTTTTTATT TTTTAAAAAT TAAATAGTTA TGTATGTCCA TTATTGACAA GGGTTTGACA TTCATTCAAA AAAATTTGAC ATGAGTTTTT TTCTGTGTGT TAATTACATT GCCAATAATT ATTAGAAAAC TTCTCATAGG TGAACCAACT CAACAAAGTC ACGAAATTGA CGCTAGGGAA GAGAAAATAA ACACGGTTTT GCACATATTT ATCTGCTTTA ATCTTGATCT GAAAAATGTA AGATGTATAC CTTTTGTTAT ATGAAAAGAA TGTTTGTTAA CCAATTGATA CGTTAATTAT ACGAAGAACG AAACGCAAAC TTTTCAACTT AGATTTTAAA TAAAAAGCTT TCACTTTTGA AAATATTATC TAAAGACTAG CTTTCCTTTG AACAAACAAA AAAAAGCAAA TAAAATACTT TATCATTCCA TTTTTTCTAA TTAAATAGAT ATTTAAAATA CAATACAAGG ACCACATTTG GCTATAAAAC
GAAGTCCTCT TGTTTCCGAA GAACATCATT AGGCAGAGAA GATAAAAACT TTTAAAACAA AACACCAACA AGAGAGAAAA

Retrieve as FASTA

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGGTAAGGATTTATCCAGACGTGTCCTCACTTTTCTGATATTGATCTCGTTACTGGCGGTGGCAATGAACCTTCTGTCCACGGTAGAGGCACAGAACAAGAAGAAGCCGAGGAGAGAT
GTTCCTCTAGTGAAAGGTCTCTCATGGAGCTTTTACCAGAAAGCATGTCCAAAAGTGGAAAGCATCATCAGGAAAGAGCTCAAGAAAGTCTTCAAGAGAGACATTGGTTTAGCCGCAGCC
ATCCTTCGCATACATTTCCATGACTGCTTCGTTCAGGTCTCTCTATCTTTTTCTTTCTTTTCTCCCTTTTGTGTTGGTCTATTAAGAAACATGAATTTGATGTTCGCTAAGCCTTATCTA
AAACGGCCTTACGCAAGTAATTTAACGTACTTTTGGTTTGATTAAAAGACTTGTTTTTTTTTTAAGATAAGAAACCATATCCACTTATACCCACATAAAAATGAAATTTGTAAAATCAAG
AAACATGTTTAACTGTTATACTTATGTTATCACGTGCTAGACTAAATCCGACCAAAACCACCTTAAGAGAAAAACATAAAGTCGCCTCGAAATTCTAAAGAACAAGAAGTAAGGATTGTC
TGTTCTTTATATTTTTTTTTCTTGTAAAGAACAATTTCATACTAATGCGCAAGTGTAAACACTATAGTAATTTGTTTCTGACATTACATGCATTGGGATATAGACTTGAATACAGCAGGA
CGTGTGGACCGTGTGGTATTAATACTATACACCCGCTTTTCGTGGGTTAGTTGAGTCGCTTTTAATGAGAGAAAAGTAAATACCCTACCAATGGTACAAAATTACAAATAAGAGAATGCT
ATTGATATATTCAGTTCATTGTGTAACAAAAAAACAGTATTCGATTTTCCTCTACACAAATACTAATCAAATTTTTGTAGCGTTAATTGCAACACCTTGTAATGAGATGTGTGGCCTCCT
TTGATCAGACATATAATATAGCATAGGAAAATCTTGAATAATGTTTTTTTGTTCATTTACTGCTTTCACCATTGAGATGTAATATAAATTGAAACAGGGATGTGAAGCATCAGTGCTGCT
AGATGGATCAGCGAGTGGACCAGGAGAGCAATCATCGATCCCGAATCTGACACTCCGTCAAGCCGCCTTTGTCGTCATCAATAACCTTCGTGCCCTCGTCCACAAGCAGTGTGGTCAAGT
CGTCTCTTGCTCTGACATCCTCGCTCTAGCCGCCCGTGACTCCGTCGTACTTGTAACCAAACTCTCCCTCTCTCTTCATCAAATCTCTTTGTCTATTTATATCTTTATACTATATTCCAA
CCACACGTGACATACCAATACTATATACTAATAATTGCTGATTACTCTTTGGCCAATTAATGAAGTCAGGAGGGCCAGACTATGCTGTACCACTTGGCCGACGCGACTCACTAGCATTCG
CGAGCCAGAACACAACGTTAAACAACTTGCCGCCACCATTCGCCAACGCGAGCCAGCTCATCGCCGACTTCGCCAATAGAAACCTCGACATCAACGACTTGGTTGCACTCTCCGGTGGAC
ACACCATCGGGATCGCGCGCATTGTCCGTCTTTCACAGACCGTCTCTACCCGAACCAAGACCCAACCATGAACAAGTCCTTCGCCAACAACCTTAAACGCACTTGCCCCACCGCTAACTC
GAGCAACACGCAAGTGAATGACATAAGGAGCCCTGACGTGTTTGACAACAAGTACTACGTTGATCTCATGAACCGACAAGGGCTGTTTACATCAGACCAGGACCTGTTCACGGACAAGAG
GACACGTGGTATCGTGGAGAGCTTTGCCATCGACCAAAAGCTGTTTTTTGATCATTTTGTGGTGGGGATGATCAAGATGGGTCAGATGAGTGTCTTGACGGGGTCACAAGGAGAGATTCG
TGCAAACTGTTCCGCTAGAAACACTGAAAGTTTCATGTCTGTTTTGGAAGAAGGCATACTCGAGGAGGCTCTTTCCATGATCTAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA

cDNA►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

CAGAGAAGAT AAAAACTTTT AAAACAAAAC ACCAACAAGA GAGAAAAATG GGTAAGGATT TATCCAGACG TGTCCTCACT TTTCTGATAT TGATCTCGTT ACTGGCGGTG GCAATGAACC TTCTGTCCAC GGTAGAGGCA CAGAACAAGA AGAAGCCGAG GAGAGATGTT CCTCTAGTGA AAGGTCTCTC ATGGAGCTTT TACCAGAAAG CATGTCCAAA AGTGGAAAGC ATCATCAGGA AAGAGCTCAA GAAAGTCTTC AAGAGAGACA TTGGTTTAGC CGCAGCCATC CTTCGCATAC ATTTCCATGA CTGCTTCGTT CAGGGATGTG AAGCATCAGT GCTGCTAGAT GGATCAGCGA GTGGACCAGG AGAGCAATCA TCGATCCCGA ATCTGACACT CCGTCAAGCC GCCTTTGTCG TCATCAATAA CCTTCGTGCC CTCGTCCACA AGCAGTGTGG TCAAGTCGTC TCTTGCTCTG ACATCCTCGC TCTAGCCGCC CGTGACTCCG TCGTACTTTC AGGAGGGCCA GACTATGCTG TACCACTTGG CCGACGCGAC TCACTAGCAT TCGCGAGCCA GAACACAACG TTAAACAACT TGCCGCCACC ATTCGCCAAC GCGAGCCAGC TCATCGCCGA CTTCGCCAAT AGAAACCTCG ACATCAACGA CTTGGTTGCA CTCTCCGGTG GACACACCAT CGGGATCGCG CATTGTCCGT CTTTCACAGA CCGTCTCTAC CCGAACCAAG ACCCAACCAT GAACAAGTCC TTCGCCAACA ACCTTAAACG CACTTGCCCC ACCGCTAACT CGAGCAACAC GCAAGTGAAT GACATAAGGA GCCCTGACGT GTTTGACAAC AAGTACTACG TTGATCTCAT GAACCGACAA GGGCTGTTTA CATCAGACCA GGACCTGTTC ACGGACAAGA GGACACGTGG TATCGTGGAG AGCTTTGCCA TCGACCAAAA GCTGTTTTTT GATCATTTTG TGGTGGGGAT GATCAAGATG GGTCAGATGA GTGTCTTGAC GGGGTCACAA GGAGAGATTC GTGCAAACTG TTCCGCTAGA AACACTGAAA GTTTCATGTC TGTTTTGGAA GAAGGCATAC TCGAGGAGGC TCTTTCCATG ATCTAGATGA AACCATATAA AATATCGCCT CTTATTTTCC TTTGACTTTG TTTTTTTTAG TTGACGCACT
TGTGGTTTGT GGAATGCTTT AAGACTATCT GATAAATAAG AGTGTTGCTT CATCTTAGCT TTGTTTTTAA GTTCATGCAC GTATGCTTAA TCTGTGGAAT GTTCGAGA

Retrieve as FASTA