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Entry information : PtPrx[P]54 (POPTR_0014s13100)
Entry ID 3144
Creation 2010-01-15 (Christophe Dunand)
Last sequence changes 2012-03-08 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: PtPrx[P]54 (POPTR_0014s13100)
Name (synonym) PtPrx[P]54 (POPTR_0014s13100)
Class Class III peroxidase     [Orthogroup: Prx013]*
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtPrx[P]54
start..stop		 S start..stop
PtPrx09 423 3.36e-150 1..322 10..322
PtrtrPrx16 407 6.01e-144 1..322 10..323
MePrx66 406 2.09e-143 1..322 10..323
MePrx73 400 7.59e-141 1..322 10..323
Literature and cross-references PtPrx[P]54 (POPTR_0014s13100)
DNA ref. Phytozome 12:   scaffold_14 (9638044..9640219)
Protein sequence: PtPrx[P]54 (POPTR_0014s13100)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   322
PWM (Da):   %s   34873.95  
PI (pH):   %s   8.42
Sequence
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Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
VVVLTVSGFC QAAGGVEEEI LQDILPCCRG YIVRNVTWRR AATSLNLPAK LLRTHFHGCF VRQGCDASVL VNSTANNTAE KDAIPNLSLE GFDVIDEIKT QLENTCPGKV SCADILALSA  RDSVAFQGPN NFGTRAVQKP RVVGRRDGIV SEALEAFTDI PSPFFNFWTP LQSFKSKGLS VHDLVVLGGH TIGAGHCNLV SNRLYNFTGK GEQDPSLNPT YVAFLKPKCK ILNEATTTVE 
IDPGSSQNFD TAYFAILKQR KGLFQSDAAL LTNRTPNKIV GELLNSNVFF REFAQPMKRM GAIGVLPGTS GEIRKKCSVI NS 

Retrieve as FASTA  
Remarks Pseudogene. Sequence from genomic (chromo 14). PS is missing and several frame shifts and stop codons. join(9638044..9638228,9638783..9638978,9639522..9639701,9639811..9640219)
DNA ►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GTAGTAGTCT TGACTGTTTC TGGGTTTTGT CAGGCTGCAG GTGGGGTTGA GGAAGAAATT CTACAAGATA TCTTGCCCTG CTGCCGAGGA TATATTGTCA GAAATGTCAC TTGGAGACGC  GCTGCGACCA GCCTCAACTT GCCTGCAAAG CTATTGAGAA CGCATTTTCA TGGCTGCTTC GTCAGGGTAA GCAATACTCA AGCAATGCAG TCTTCTGGGT TGTTGTAATA CTCGCAGTTT  TCTCCATGCA TGCACGCACA TGTTGTCAAA AGCAACATAT ATATATATAT ATATCTATTG CAATGCTTTT TCTCTTTTTT GTTTTGTTTT TAACAATTAA AGGAATTATA CATTCATTGT  ATAATTGCAG GTGTACTATT AGATTCTTAC AGTGCAACAC ATAAATTCAA ATTAAACAAA ATGTGTGATC AGTATAACAC ATAAATTCAA ATTAAACACT TAACATCTTT CCTAAGAACA  CATTAGGTTT AACTTATGTG ACCGGTTTAT ATATTTCCAC AATATTAGAG CAAAAACATT CCTGGCACTT CCTTGCTAGC ACTATTAGAG CAAAAACATT CCTGGCACTT CCTTGCTAGC  ACTATTGACA GAAGGATCTT GTGTGGACAG GCGCTGGACA TGGATAAGCA TTTAAAGTTC TACCTGTTTC TAATTAATTT CCTAATGATT TGCATTGATT GAGATGTAAC ATGGATCGGA  ATTTGATTCA ATCCTGTAGG CAGGGTTGCG ATGCCTCTGT TCTAGTAAAC TCAACAGCAA ATAACACCGC GGAGAAAGAT GCAATTCCAA ATCTGTCTTT GGAAGGCTTT GATGTTATTG  ACGAGATAAA AACGCAGCTA GAGAACACAT GTCCAGGAAA GGTATCTTGT GCTGATATTT TGGCCTTGTC TGCTAGGGAC TCGGTTGCCT TCCAGGTACT ATAAAATACT AGTCTTTCTG  CTCCATCGAC TTCCACGTTT AATAATTTTG CCGATAGAAT ATTCTATCGG TATTTACTTT AACATGTCAT CAGTGAATAT TTATTGACGG ATTTACAAAT GAAAACTGGT TTTCAAAAAT  AACCTCTGGG TAATTTTTGA TACGTCGAAA AGTTTATCGG TAATATAAAA ACCAGTAATT TTATAGATAG ATAATGTAAG CAAAAACAAT CTCAACAAAA TTTTATTGAT GATAACAATA  TCTATAAAAA CTTACATGTC ATTATATTGT TTGATTTTTT CTATTCCGAT TGGAATTCTC TCGATTTAAA AATAAACGAA GAAGTTATTT TCATTGATGT TTACTGATAG AGTTAGCAAT  AAACAAATTT TATTAATAAA TATCATCATA AAATACCAAC AAAAAAAATC TATTTTCATA TTCATTAATT TTCTGGTAGT CATTATTATC ATGCATATTA TAACAGCAAG TTGAAATAGA  ACTCATACTT CCGCATTCTT TCACGCCTTC TCAAACTCGG TCCCAACAGC TTCGGCACGC GTGCAGTTCA AAAACCCAGA GTTGTGGGTA GAAGAGATGG CATTGTCTCA GAAGCTTTGG  AGGCCTTCAC AGACATTCCT TCCCCATTCT TCAATTTCTG GACGCCCCTT CAAAGTTTCA AGAGCAAAGG TCTCTCTGTT CATGATCTAG TTGTACTATC AGGTATAGTA TAAAGCAATG  AGGCAGGAAC TTAACACACA GTTAGTTTTC AAGAGCGATC ACATTCATTG AGCAGGAACT TGACGTGCTG AATATCATGC TGCATGCGGG GGACACACCA TTGGAGCAGG CCACTGCAAC  CTGGTCAGCA ACCGGCTTTA CAACTTCACA GGAAAAGGAG ACCAAGACCC TTCCCTGAAC CCAACATACG TTGCTTTCTT AAAAAACCCA AATGCAAAAT TCTTAACGAA GCAACAACGA  CGGTAGAGAT AGACCCTGGC AGCTCTCAGA ATTTCGATAC TGCTTACTTC GCTATACTAA GCAGCGAAAG GGTCTCTTCC AATCCGATGC AGCCCTTCTA ACAAACAGAA CTCCGAACAA  GATTGTTGGA GAGCTGCTTA ACTCAAATGT TTTCTTCAGA GAATTTGCGC AACCAATGAA GAGAATGGGA GCAATCGGGG TTCTTCCTGG CACGTCAGGG GAGATCAGAA AGAAGTGTAG 
CGTTATCAAT TCC 

Retrieve as FASTA