Entry information : BoPrx36_other
Entry ID 3234
Creation 2006-08-09 (Christophe Dunand)
Last sequence changes 2017-04-11 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2017-04-11 (Christophe Dunand)
Peroxidase information: BoPrx36_other
Name BoPrx36_other
Class Class III peroxidase    [Orthogroup: Prx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica oleracea (Cauliflower)    [TaxId: 3712 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BoPrx36_other
start..stop
S start..stop
BnPrx36-1C_other 699 0 1..337 1..337
BrPrx36-1Aa_other 676 0 1..337 1..337
BnPrx36-1A_other 637 0 1..320 1..320
TsPrx36 595 0 1..337 1..337
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '3234' 'join(1..243,325..516,580..745,1189..1601)' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1..243 241 N° 2 325..516 190 N° 3 580..745 164 N° 4 1189..1601 411
join(1..243,325..516,580..745,1189..1601)


exon

Literature and cross-references BoPrx36_other
Literature Ayele,M., Haas,B.J., Kumar,N., Wu,H., Xiao,Y., Van Aken,S., Utterback,T.R., Wortman,J.R., White,O.R. and Town,C.D. Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis. Genome Res. 15 (4), 487-495 (2005)
Cluster/Prediction ref. Genebank:   106310883
Protein sequence: BoPrx36_other
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   337 (313)
PWM (Da):   %s   37316.42 (34675.0)  
PI (pH):   %s   6.25 (5.71) Peptide Signal:   %s   cut: 25 range:25-337
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAKPVMCIVLTQIVLVALFHLCMSSQTKECTSTSSLSPQFYDNSC
PKAQAIVQSFVAKAHSNDPRMAASLFRLHFHDCFVN
GCDGSLLLDYSGTIESEKRADTNVDSARGFEVIDDIKSALEDECRQTVSCADILALVARDTTVITGGPSWEVYLGRRDAREASLIASNNNIPVASSTFETIVTKFNDQGLGLIDLVALLG
RHTIGNSRCKSFRQRLYNHSGNSDLDQTLNQNYASMLQQGCPISGDDQNLFALDYMTPNKFDNYYFKNLMTFKGLLSSDEILYTKSGDSMELVKLYGANEELFFEQYAKSKVKMGNISPL
TGRNGEIRRICRRVNH

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo C8). No EST found.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCAAAGCCAGTAATGTGCATTGTTCTCACTCAAATCGTCCTCGTTGCCTTATTTCATCTTTGTATGAGTTCTCAAACCAAAGAATGCACGAGCACATCCTCCCTCTCCCCTCAGTTT
TACGACAACTCGTGCCCTAAAGCCCAAGCCATTGTCCAATCTTTCGTCGCCAAAGCACACTCCAACGACCCTCGCATGGCAGCCTCATTGTTTAGGCTTCATTTCCATGACTGCTTCGTC
AAT
ATGTTTGACAAAATTTAGTTTCGTTTCTATAACAATATTTATGGATAAAACTTAATAATGCTTTCTTTTTTTGGGTGGTACAGGGATGTGATGGTTCTTTATTATTAGACTATAGTG
GAACCATAGAAAGCGAGAAACGAGCAGACACAAACGTAGACTCTGCCCGAGGGTTTGAAGTCATCGACGATATTAAGTCTGCCTTGGAAGATGAGTGTCGCCAAACAGTTTCTTGCGCTG
ATATTTTGGCTCTCGTTGCTAGAGACACTACTGTTATT
TTGTAAGTTAATTTCCGTATTAAATATTATTACGAACACTCGTTCATTAACTCAGTTATATACAGACTGGTGGCCCGAGTTG
GGAAGTATATTTAGGAAGAAGAGATGCAAGGGAAGCAAGCTTGATTGCTTCTAACAACAATATTCCTGTTGCCAGCTCTACGTTTGAGACAATTGTCACCAAGTTCAACGACCAAGGACT
CGGTCTTATCGATCTTGTTGCTCTCTTAG
AGGTACTATAGTTCATTCAAATTATTGGTGGTAAACATATGATTCGATCAACTTATACCCTTTTTTGAAGGCTAAAAATATAGATTTGAAA
ATGCTAATTAGTTATGCTAGTATTAAGAAAATGTGCCAACCAAGTCTATGATTATGTTTTGTAGTCGACGATTTAGTTGTTCCTGGGTAAAGTTTAGGAATTGAATGTTAAGTTTAATTT
TAATTAGTTACAAAAAGATCAAATTTTACCGGTTTAGAGTTTGTGTTACACTTTTTGTTAATTTGGAAAAAGCTATATAATATGTATATATAGCTTTCTTTATTGTGGCAAAATAAATGG
CACATTTTGTCTCTTTTTCAACATAATGTCTCATACGTTCTGTCAAATTGCCTGAAGCATTACATACTAATAGTATTGTAGATTTTAGAATTAAAAGCTATGATTTGAATGTAGGACGTC
ATACGATAGGAAATTCGAGGTGCAAGAGCTTCCGACAAAGGCTATACAACCATTCTGGAAACAGCGATCTCGACCAGACTTTGAATCAAAACTACGCCTCAATGTTGCAGCAGGGATGTC
CTATTTCTGGTGACGACCAGAACCTCTTTGCTCTCGACTATATGACGCCAAATAAGTTTGATAACTACTACTTCAAGAATCTGATGACTTTTAAAGGACTCTTGAGCTCTGATGAGATTT
TGTACACAAAGAGTGGAGACTCCATGGAGCTGGTCAAGCTTTACGGGGCTAATGAGGAATTGTTCTTTGAGCAGTACGCAAAGTCAAAGGTGAAGATGGGAAACATCTCGCCGTTGACGG
GGAGAAATGGTGAGATCCGGAGGATCTGTAGGAGAGTTAACCATTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCAAAGCCAGTAATGTGCATTGTTCTCACTCAAATCGTCCTCGTTGCCTTATTTCATCTTTGTATGAGTTCTCAAACCAAAGAATGCACGAGCACATCCTCCCTCTCCCCTCAGTTT
TACGACAACTCGTGCCCTAAAGCCCAAGCCATTGTCCAATCTTTCGTCGCCAAAGCACACTCCAACGACCCTCGCATGGCAGCCTCATTGTTTAGGCTTCATTTCCATGACTGCTTCGTC
AAT
GGATGTGATGGTTCTTTATTATTAGACTATAGTGGAACCATAGAAAGCGAGAAACGAGCAGACACAAACGTAGACTCTGCCCGAGGGTTTGAAGTCATCGACGATATTAAGTCTGCC
TTGGAAGATGAGTGTCGCCAAACAGTTTCTTGCGCTGATATTTTGGCTCTCGTTGCTAGAGACACTACTGTTATT
ACTGGTGGCCCGAGTTGGGAAGTATATTTAGGAAGAAGAGATGCA
AGGGAAGCAAGCTTGATTGCTTCTAACAACAATATTCCTGTTGCCAGCTCTACGTTTGAGACAATTGTCACCAAGTTCAACGACCAAGGACTCGGTCTTATCGATCTTGTTGCTCTCTTA
G
GACGTCATACGATAGGAAATTCGAGGTGCAAGAGCTTCCGACAAAGGCTATACAACCATTCTGGAAACAGCGATCTCGACCAGACTTTGAATCAAAACTACGCCTCAATGTTGCAGCAG
GGATGTCCTATTTCTGGTGACGACCAGAACCTCTTTGCTCTCGACTATATGACGCCAAATAAGTTTGATAACTACTACTTCAAGAATCTGATGACTTTTAAAGGACTCTTGAGCTCTGAT
GAGATTTTGTACACAAAGAGTGGAGACTCCATGGAGCTGGTCAAGCTTTACGGGGCTAATGAGGAATTGTTCTTTGAGCAGTACGCAAAGTCAAAGGTGAAGATGGGAAACATCTCGCCG
TTGACGGGGAGAAATGGTGAGATCCGGAGGATCTGTAGGAGAGTTAACCATTGA

Retrieve as FASTA