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Entry information : MtPrx04 (Medtr7g107520.1 [4.0] / AC235488_1.1 [3.5])
Entry ID 331
Creation 2006-03-03 (Christophe Dunand)
Last sequence changes 2010-09-14 (Haythem Mhadhbi)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2014-07-15 (Christophe Dunand)
Peroxidase information: MtPrx04 (Medtr7g107520.1 [4.0] / AC235488_1.1 [3.5])
Name (synonym) MtPrx04 (Medtr7g107520.1 [4.0] / AC235488_1.1 [3.5])
Class Class III peroxidase    [Orthogroup: Prx011]
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Medicago
Organism Medicago truncatula (barrel medic)    [TaxId: 3880 ]
Cellular localisation N/D
Tissue type Roots
Inducers Glomus intraradices infection
Glomus mosseae infection
Nitrogen starvation
Sinorhizobium inoculation
Repressor N/D
Best BLASTp hits
Perox score E-value MtPrx04
start..stop		 S start..stop
GmPrx138 551 0 1..320 1..323
GmPrx137 528 0 1..320 1..321
GmPrx37 504 0 3..320 1..321
GmPrx66 495 9.31e-179 24..320 9..308
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '331' 'complement(join(43859760..43860163,43860486..43860654,43860744..43860923,43861059..43861268))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 43861059..43861268 208 N° 2 43860744..43860923 178 N° 3 43860486..43860654 167 N° 4 43859760..43860163 402
complement(join(43859760..43860163,43860486..43860654,43860744..43860923,4386105 9..43861268))


exon

Literature and cross-references MtPrx04 (Medtr7g107520.1 [4.0] / AC235488_1.1 [3.5])
Literature REFERENCE 1. Journet,E.P. et al.,unpublished
REFERENCE 2. Watson,B.S. et al., unpublished
REFERENCE 3. Natalija Hohnjec, Martin F. Vieweg, Alfred Puhler, Anke Becker, and Helge Kuster. Overlaps in the Transcriptional Profiles of Medicago truncatula Roots Inoculated with Two Different Glomus Fungi Provide Insights into the Genetic Program Activated during Arbuscular Mycorrhiza. Plant Physiol. 137: 1283-1301(2005).
DNA ref. Phytozome 12:   chr7 (43861268..43859760)
Cluster/Prediction ref. Phytozome Gene 12:   31081610
Omic ref. Gene atlas:   Mtr.43780.1.S1_at Legoo:   Mtr.43780.1.S1_at
Protein sequence: MtPrx04 (Medtr7g107520.1 [4.0] / AC235488_1.1 [3.5])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   320 (298)
PWM (Da):   %s   35343.08 (32835.8) Transmb domain:   %s   i5-24o
PI (pH):   %s   8.15 (8.01) Peptide Signal:   %s   cut: 23 range:23-320
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MKMRFFLVASMVIFCFLGISEGGSLRKNFYKKSCPQAEEIVKNIT
LQHVSSRPELPAKLIRLHFHDCFVRGCDASVLLESTAGNTAEKDAIPNLSLAGFDVIEDIKEALEEKCPGIVSCADILTLATRDAFKNKPNWEVLTGRRDGTVSRSIEALINIPAPFHNITQLRQIFANKKLTLHDLVVLSGAHT
IGVGHCNLFSNRLFNFTGKGDQDPSLNPTYANFLKTKCQGLSDTTTTVEMDPNSSTTFDNDYYPVLLQNKGLFTSDAALLTTKQSRNIVNELVSQNKFFTEFSQSMKRMGAIEVLTGSNG
EIRRKCSVVN

Retrieve as FASTA  
Remarks Complete sequence from 10 partial cDNA and genomic (chromo 7, 3 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAGATGAGATTCTTTCTTGTAGCTTCTATGGTAATATTCTGTTTCCTTGGAATTAGTGAAGGAGGCAGCCTCAGGAAGAATTTCTATAAGAAGTCATGTCCTCAAGCTGAGGAGATT
GTTAAGAACATAACCCTACAACATGTCTCTTCAAGGCCTGAGCTGCCAGCCAAGTTGATAAGATTGCATTTTCATGACTGTTTTGTTAGGGTAAACACTCCTTGATCTTTACAATTTTAG
CTGACATTGTCAATGTTATATATATAGAAGTTAATGTTAATGATATATTCTCTTGTAGCTTATAAATTCTACTAAGTGACATGCATATCTATGGTTGCGTTTCAGGGGGGTGTGACGCAT
CGGTTTTGTTGGAGTCCACTGCTGGTAACACGGCGGAGAAGGATGCCATTCCTAATTTATCATTAGCAGGCTTTGATGTAATAGAAGACATAAAAGAAGCTTTGGAGGAAAAATGTCCAG
GAATTGTTTCATGTGCTGATATACTCACATTGGCTACTAGAGATGCTGTTAGTAATTTATCAAGCTAGCTAGAGACGAGTCTATACATATTTATGCATGTAGCATCATATTGATTCATTC
ATATTTTTTATTACAGTTTTTAAGAATAAACCAAATTGGGAAGTGCTTACGGGTAGAAGAGATGGTACTGTGTCCAGAAGCATTGAAGCCCTAATCAATATCCCGGCACCTTTCCATAAC
ATCACACAGCTCAGACAAATCTTTGCTAATAAAAAGCTTACTCTTCATGACTTGGTTGTATTATCAGGTACATTTAATTAAGTCTGTTTTCAAAAAAATCCATGTTAAAAATAAACATTA
TGCATAAATACTTGATTACCAAGCTACTTAAAATATAGTCTAAGCCATGCTAATAAACCAATTTAAACTATATAGTACCAACGTAGAACAAACATCGGACATGACATTGACGCGTAGACA
TATATGTAATGATTTGAGAAAATATAGTTTGTTGTATATGACCACATGCGTCGGAGTCACTTTGGACACAAACGCATATTCTAAAGTGTCGATGCTAAATTATTCAAACAAACTAGTTAA
ATTAACTTATTGGCTATACGTATGTATAGGAGAGCACACACAATTGGAGTAGGACATTGCAACTTATTCAGCAACAGGCTTTTCAACTTCACTGGAAAAGGTGATCAAGATCCATCTCTA
AATCCAACTTACGCAAATTTCTTGAAGACCAAATGCCAAGGCCTAAGTGACACCACTACAACAGTCGAAATGGATCCTAATAGCTCAACAACATTTGACAATGACTATTATCCTGTCCTT
CTACAAAACAAGGGTCTCTTCACATCAGACGCTGCTCTTCTAACAACCAAGCAGTCTAGAAACATTGTTAATGAATTGGTTTCACAAAACAAATTCTTCACTGAGTTTTCTCAGTCAATG
AAGAGGATGGGAGCTATTGAGGTTCTCACTGGTTCGAATGGAGAAATTAGAAGGAAGTGCTCTGTTGTTAATTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAGATGAGATTCTTTCTTGTAGCTTCTATGGTAATATTCTGTTTCCTTGGAATTAGTGAAGGAGGCAGCCTCAGGAAGAATTTCTATAAGAAGTCATGTCCTCAAGCTGAGGAGATT
GTTAAGAACATAACCCTACAACATGTCTCTTCAAGGCCTGAGCTGCCAGCCAAGTTGATAAGATTGCATTTTCATGACTGTTTTGTTAGGGGGTGTGACGCATCGGTTTTGTTGGAGTCC
ACTGCTGGTAACACGGCGGAGAAGGATGCCATTCCTAATTTATCATTAGCAGGCTTTGATGTAATAGAAGACATAAAAGAAGCTTTGGAGGAAAAATGTCCAGGAATTGTTTCATGTGCT
GATATACTCACATTGGCTACTAGAGATGCTTTTAAGAATAAACCAAATTGGGAAGTGCTTACGGGTAGAAGAGATGGTACTGTGTCCAGAAGCATTGAAGCCCTAATCAATATCCCGGCA
CCTTTCCATAACATCACACAGCTCAGACAAATCTTTGCTAATAAAAAGCTTACTCTTCATGACTTGGTTGTATTATCAGGAGCACACACAATTGGAGTAGGACATTGCAACTTATTCAGC
AACAGGCTTTTCAACTTCACTGGAAAAGGTGATCAAGATCCATCTCTAAATCCAACTTACGCAAATTTCTTGAAGACCAAATGCCAAGGCCTAAGTGACACCACTACAACAGTCGAAATG
GATCCTAATAGCTCAACAACATTTGACAATGACTATTATCCTGTCCTTCTACAAAACAAGGGTCTCTTCACATCAGACGCTGCTCTTCTAACAACCAAGCAGTCTAGAAACATTGTTAAT
GAATTGGTTTCACAAAACAAATTCTTCACTGAGTTTTCTCAGTCAATGAAGAGGATGGGAGCTATTGAGGTTCTCACTGGTTCGAATGGAGAAATTAGAAGGAAGTGCTCTGTTGTTAAT
TAA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGATTCAACT CTCAAGCTAG TTAAGAACAA ACATACACAA AATAAGGATT GATTTAAAGA TGAAGATGAG ATTCTTTCTT GTAGCTTCTA TGGTAATATT CTGTTTCCTT GGAATTAGTG  AAGGAGGCAG CCTCAGGAAG AATTTCTATA AGAAGTCATG TCCTCAAGCT GAGGAGATTG TTAAGAACAT AACCCTACAA CATGTCTCTT CAAGGCCTGA GCTGCCAGCC AAGTTGATAA  GATTGCATTT TCATGACTGT TTTGTTAGGG GGTGTGACGC ATCGGTTTTG TTGGAGTCCA CTGCTGGTAA CACGGCGGAG AAGGATGCCA TTCCTAATTT ATCATTAGCA GGCTTTGATG  TAATAGAAGA CATAAAAGAA GCTTTGGAGG AAAAATGTCC AGGAATTGTT TCATGTGCTG ATATACTCAC ATTGGCTACT AGAGATGCTT TTAAGAATAA ACCAAATTGG GAAGTGCTTA  CGGGTAGAAG AGATGGTACT GTGTCCAGAA GCATTGAAGC CCTAATCAAT ATCCCGGCAC CTTTCCATAA CATCACACAG CTCAGACAAA TCTTTGCTAA TAAAAAGCTT ACTCTTCATG  ACTTGGTTGT ATTATCAGGA GCACACACAA TTGGAGTAGG ACATTGCAAC TTATTCAGCA ACAGGCTTTT CAACTTCACT GGAAAAGGTG ATCAAGATCC ATCTCTAAAT CCAACTTACG  CAAATTTCTT GAAGACCAAA TGCCAAGGCC TAAGTGACAC CACTACAACA GTCGAAATGG ATCCTAATAG CTCAACAACA TTTGACAATG ACTATTATCC TGTCCTTCTA CAAAACAAGG  GTCTCTTCAC ATCAGACGCT GCTCTTCTAA CAACCAAGCA GTCTAGAAAC ATTGTTAATG AATTGGTTTC ACAAAACAAA TTCTTCACTG AGTTTTCTCA GTCAATGAAG AGGATGGGAG  CTATTGAGGT TCTCACTGGT TCGAATGGAG AAATTAGAAG GAAGTGCTCT GTTGTTAATT AATAACCTCG GAGTTTAATT AACAAATGTT TCGTTTTTCT GAATTTAATT TAGTTTTAAT  TTTTATTACT TTGCCGCCAA ATTGTTTTGG GTTGTGAAGT TGTATGTCAA TAAGTTGCAA ATGCGCTTTG TGAGATTCTT AAGTATTCAA ATTCAAGTAA AATAAAGGTT GTGTTTATGA 
AAG 

Retrieve as FASTA