View Redoxidase 3322

Entry information : SmPrx06-1_110 (SmPrx06a_110)

Entry ID	3322
Creation	2009-12-01 (Christophe Dunand)
Last sequence changes	2009-12-01 (Christophe Dunand)
Sequence status	complete
Reviewer	Paula Nunes
Last annotation changes	2011-01-25 (Toky Ramarohetra (Scipio))

Peroxidase information: SmPrx06-1_110 (SmPrx06a_110)

Name (synonym)

SmPrx06-1_110 (SmPrx06a_110)

Class

Class III peroxidase [Orthogroup: Prx053]

Taxonomy

Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella

Organism

Selaginella moellendorffii [TaxId: 88036 ]

Cellular localisation

N/D

Tissue type

Whole plant

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SmPrx06-1_110 start..stop	S start..stop
SmPrx06-2_11	642	0	1..339	1..339
SmPrx05-1_110	609	0	4..339	1..336
SmPrx05-2_11	589	0	25..339	22..336
SmPrx27-1_10	401	5.13e-141	13..338	5..331

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '3322' 'complement(join(419823..420268,420324..420486,420545..420742,420805..421017))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	420805..421017	211	N° 2	420545..420742	196	N° 3	420324..420486	161	N° 4	419823..420268	444
complement(join(419823..420268,420324..420486,420545..420742,420805..421017))

Literature and cross-references SmPrx06-1_110 (SmPrx06a_110)

Literature	Weng,J.-K., Tanurdzic,M. and Chapple,C. Functional analysis and comparative genomics of expressed sequence tags from the lycophyte Selaginella moellendorffii. BMC Genomics 6 (1), 85 (2005)
DNA ref.	Phytozome 12: scaffold_110 (421017..419823)
mRNA ref.	JGI transcript: 269699
EST ref.	GenBank: DN839448 [5' end]

Protein sequence: SmPrx06-1_110 (SmPrx06a_110)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	339 (316)
PWM (Da):	36676.26 (34402.1)
PI (pH):	5.46 (5.46)	Peptide Signal:	cut: 24 range:24-339

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MASMSPQQLLCLLLIAAACSASARPDSLHSYAQSCPRAEQIVAAT
VKSAADRDPTTPAGIIRLFFHDCFVQGCDASILLESTPTDGKDVEMFARPNINSVRGFEIIEAAKTQLEAVCPGVVSCADVLAFAARDATTYFGGMFYTVPTGRLDGRISSRTEADSLPGPRLPFSELREIFDGKKLSVHDLVLLSGGHTIGRAKCRFVEDRIYNFSDTGSPDPRLDATYREELRRICPQGANPGPTVALDRNSEFSFDNAYYRNLEANRGLLSSDAVLRTDPDAANLINSLAQNPPTFLSMFAQSMINMGNIEWK
TRANGEIRKKCSAVNSRITTEVGDVASF

Retrieve as FASTA

Remarks

Complete sequence from genomic (3 introns), 1 EST.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCTTCAATGTCCCCGCAGCAGCTTCTCTGCCTACTCCTCATAGCAGCAGCTTGTTCTGCGTCTGCTCGTCCCGATTCTCTTCACAGCTATGCTCAATCTTGTCCGAGAGCTGAACAG
ATAGTCGCGGCCACTGTCAAGAGTGCGGCGGACCGGGATCCAACAACACCAGCCGGCATTATCCGCTTGTTCTTCCACGACTGCTTTGTCCAAGTAAGCTCGTCGTCCTTAGCAGCTTTG
TATGTGAGTTGTGACGAATGTGTTTATTTGTCCAGGGGGGTGCGATGCTTCAATACTTTTGGAATCCACTCCTACTGATGGGAAAGATGTGGAGATGTTCGCGCGCCCGAACATCAACTC
TGTTCGTGGTTTCGAGATTATCGAGGCGGCAAAGACCCAGCTGGAGGCTGTGTGCCCGGGAGTTGTGAGCTGTGCGGATGTTCTCGCGTTTGCTGCCAGGGACGCGACAACTTACGTAAG
CACAAGTCGGCTTTTGTTGATTTCTCTTTGACTTTGCCGGCAAATTTATGTAGTTTTTGGAGGGATGTTCTACACGGTGCCTACGGGTCGCCTTGACGGACGAATCTCTAGCAGAACAGA
AGCCGACAGCTTACCCGGCCCCAGGTTGCCGTTCAGTGAGCTGAGAGAGATCTTCGATGGCAAAAAATTGTCAGTTCATGACCTCGTGCTGCTCTCCGGTAAGAAGTTTCTGTTCAAGCT
AGAAATCTCCACCAACATTGCCGTAACTTACAGGCGCGGACACACCATTGGTCGCGCAAAGTGTAGATTCGTCGAGGATCGTATCTACAACTTTAGCGACACCGGAAGTCCCGATCCACG
CCTGGACGCTACGTACCGTGAGGAGCTCCGGCGGATTTGCCCGCAGGGAGCAAACCCGGGCCCGACGGTGGCGCTGGACAGGAACTCGGAGTTTAGCTTCGACAACGCTTACTACAGGAA
CCTCGAGGCCAACAGGGGGCTGCTTTCGTCGGACGCGGTGCTCCGGACCGACCCGGACGCTGCCAATCTCATCAACTCGCTCGCTCAGAACCCGCCAACGTTCCTCTCCATGTTCGCGCA
GTCGATGATCAACATGGGAAACATCGAGTGGAAGACGAGAGCCAACGGGGAGATAAGGAAGAAGTGCTCGGCCGTGAACTCCAGGATCACCACCGAAGTGGGCGACGTTGCGTCCTTCTA
G

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCTTCAATGTCCCCGCAGCAGCTTCTCTGCCTACTCCTCATAGCAGCAGCTTGTTCTGCGTCTGCTCGTCCCGATTCTCTTCACAGCTATGCTCAATCTTGTCCGAGAGCTGAACAG
ATAGTCGCGGCCACTGTCAAGAGTGCGGCGGACCGGGATCCAACAACACCAGCCGGCATTATCCGCTTGTTCTTCCACGACTGCTTTGTCCAAGGGTGCGATGCTTCAATACTTTTGGAA
TCCACTCCTACTGATGGGAAAGATGTGGAGATGTTCGCGCGCCCGAACATCAACTCTGTTCGTGGTTTCGAGATTATCGAGGCGGCAAAGACCCAGCTGGAGGCTGTGTGCCCGGGAGTT
GTGAGCTGTGCGGATGTTCTCGCGTTTGCTGCCAGGGACGCGACAACTTACTTTGGAGGGATGTTCTACACGGTGCCTACGGGTCGCCTTGACGGACGAATCTCTAGCAGAACAGAAGCC
GACAGCTTACCCGGCCCCAGGTTGCCGTTCAGTGAGCTGAGAGAGATCTTCGATGGCAAAAAATTGTCAGTTCATGACCTCGTGCTGCTCTCCGGCGGACACACCATTGGTCGCGCAAAG
TGTAGATTCGTCGAGGATCGTATCTACAACTTTAGCGACACCGGAAGTCCCGATCCACGCCTGGACGCTACGTACCGTGAGGAGCTCCGGCGGATTTGCCCGCAGGGAGCAAACCCGGGC
CCGACGGTGGCGCTGGACAGGAACTCGGAGTTTAGCTTCGACAACGCTTACTACAGGAACCTCGAGGCCAACAGGGGGCTGCTTTCGTCGGACGCGGTGCTCCGGACCGACCCGGACGCT
GCCAATCTCATCAACTCGCTCGCTCAGAACCCGCCAACGTTCCTCTCCATGTTCGCGCAGTCGATGATCAACATGGGAAACATCGAGTGGAAGACGAGAGCCAACGGGGAGATAAGGAAG
AAGTGCTCGGCCGTGAACTCCAGGATCACCACCGAAGTGGGCGACGTTGCGTCCTTCTAG

Retrieve as FASTA