View Redoxidase 3323

Entry information : SmPrx57-1_5 (SmPrx57a_5)

Entry ID	3323
Creation	2009-11-09 (Paula Nunes)
Last sequence changes	2009-11-09 (Paula Nunes)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2011-01-25 (Toky Ramarohetra (Scipio))

Peroxidase information: SmPrx57-1_5 (SmPrx57a_5)

Name (synonym)

SmPrx57-1_5 (SmPrx57a_5)

Class

Class III peroxidase [Orthogroup: Prx350]

Taxonomy

Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella

Organism

Selaginella moellendorffii [TaxId: 88036 ]

Cellular localisation

N/D

Tissue type

Whole plant

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SmPrx57-1_5 start..stop	S start..stop
SmPrx57-2_33	664	0	1..330	1..330
SmPrx80-1_13	375	6.52e-131	17..326	18..324
SmPrx80-2_66	373	3.21e-130	19..326	13..318
PabPrx102	345	2.52e-119	11..326	3..322

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '3323' 'complement(join(3719908..3720320,3720379..3720544,3720618..3720812,3720884..3721102))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	3720884..3721102	217	N° 2	3720618..3720812	193	N° 3	3720379..3720544	164	N° 4	3719908..3720320	411
complement(join(3719908..3720320,3720379..3720544,3720618..3720812,3720884..3721 102))

Literature and cross-references SmPrx57-1_5 (SmPrx57a_5)

Literature	Weng,J.-K., Tanurdzic,M. and Chapple,C. Functional analysis and comparative genomics of expressed sequence tags from the lycophyte Selaginella moellendorffii. BMC Genomics 6 (1), 85 (2005)
DNA ref.	Phytozome 12: scaffold_5 (3721102..3719908)
EST ref.	GenBank: DN838122 [3' end] FE464316.1 [Fragment] FE487998.1 [Fragment]

Protein sequence: SmPrx57-1_5 (SmPrx57a_5)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	330 (306)
PWM (Da):	35844.19 (33399.9)
PI (pH):	5.27 (5.26)	Peptide Signal:	cut: 25 range:25-330

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAPACEILVMVSLLKASLVVFSAAADKLELGYYSETCPNLEEILA
TSAKLKLAEAPTTPAAVVRLLFHDCFIEGCDASIMITSTPDNLAERDAEVNRDLAGDGFDAVVRAKAAVEAECPGVVSCADILVIIARNFIELTGGPSYPVLKGRKDGFISEAARVQDNLPGSTLNLHQLLRNFKSKGLDMEDLVVLSGAHTFGFAHCKQFHKRLYNFSRDRAMDPRLPPVFASSLKAACPERGDDPGLVLPFDPSTPFAFDNSYYKTLVAGNALLISDETLLAKRKTREMIREFARDEQKFYQEFGAAMQRLSSVGV
KVGSDGDVRRDCTAFDR

Retrieve as FASTA

Remarks

Complete sequence from genomic (3 introns) and 3 EST. Contig also contains 3 other Prx

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCGCCAGCGTGTGAGATTTTGGTAATGGTTTCCTTGTTGAAGGCTTCGTTGGTGGTTTTTAGCGCAGCAGCAGATAAACTCGAGCTCGGCTATTACTCCGAGACGTGTCCAAATTTG
GAAGAGATCCTCGCAACCTCTGCTAAACTTAAGCTGGCCGAAGCACCCACGACTCCTGCGGCTGTTGTGAGGCTCTTGTTCCACGACTGCTTCATAGAGGTAAGTCCGATTTTCTCGTTT
CTCTGCTTTTTATTTTTCGATCTTGTGATGATCTTGTTTGCATGGTGCAGGGGGATGCGATGCCTCGATCATGATAACTTCTACTCCGGACAACTTGGCTGAAAGAGACGCGGAAGTTAA
CAGGGACTTGGCTGGTGATGGTTTTGATGCCGTGGTTCGAGCAAAGGCGGCGGTGGAAGCCGAGTGCCCGGGAGTGGTGTCTTGTGCTGACATCTTGGTGATCATAGCGAGAAACTTCAT
AGAGCTGGTAAGATTAAGTTTCATTAGTTCTCATGCAATTCTAGCTTCCAGGTTGATCAAAAGGTCTTTTTGATTGACAGACACTGGTGGGCCTTCGTATCCTGTTCTCAAGGGAAGAAA
AGATGGATTTATCTCCGAGGCCGCGAGGGTCCAGGACAACCTTCCAGGCTCCACCTTGAATCTCCATCAACTTTTACGCAACTTTAAGAGCAAAGGACTGGACATGGAAGATCTCGTGGT
ACTGAGTGGTAAGCTCTCAAAGCTTTTCATCTAAAAGCTCGAAAAGTTTCATGGATTCCTCCCTAGGTGTGCTCACACTTTTGGATTCGCTCACTGCAAGCAATTCCACAAGAGGCTCTA
CAACTTTAGCCGCGATCGCGCAATGGATCCGAGGCTCCCTCCGGTTTTCGCGTCGAGCCTCAAGGCCGCCTGTCCCGAGCGTGGCGATGATCCAGGCTTGGTGCTGCCCTTCGATCCCTC
CACTCCATTCGCCTTCGACAACTCCTACTACAAGACCCTCGTCGCTGGAAACGCGCTGCTCATCTCGGACGAGACGCTCCTCGCCAAGCGCAAGACGAGGGAGATGATCAGGGAATTCGC
GAGAGACGAGCAAAAGTTCTACCAGGAATTTGGCGCCGCGATGCAAAGACTGTCGAGCGTTGGAGTGAAGGTTGGGAGCGATGGCGACGTGAGGAGAGATTGCACGGCTTTTGATCGGTA
G

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCGCCAGCGTGTGAGATTTTGGTAATGGTTTCCTTGTTGAAGGCTTCGTTGGTGGTTTTTAGCGCAGCAGCAGATAAACTCGAGCTCGGCTATTACTCCGAGACGTGTCCAAATTTG
GAAGAGATCCTCGCAACCTCTGCTAAACTTAAGCTGGCCGAAGCACCCACGACTCCTGCGGCTGTTGTGAGGCTCTTGTTCCACGACTGCTTCATAGAGGGATGCGATGCCTCGATCATG
ATAACTTCTACTCCGGACAACTTGGCTGAAAGAGACGCGGAAGTTAACAGGGACTTGGCTGGTGATGGTTTTGATGCCGTGGTTCGAGCAAAGGCGGCGGTGGAAGCCGAGTGCCCGGGA
GTGGTGTCTTGTGCTGACATCTTGGTGATCATAGCGAGAAACTTCATAGAGCTGACTGGTGGGCCTTCGTATCCTGTTCTCAAGGGAAGAAAAGATGGATTTATCTCCGAGGCCGCGAGG
GTCCAGGACAACCTTCCAGGCTCCACCTTGAATCTCCATCAACTTTTACGCAACTTTAAGAGCAAAGGACTGGACATGGAAGATCTCGTGGTACTGAGTGGTGCTCACACTTTTGGATTC
GCTCACTGCAAGCAATTCCACAAGAGGCTCTACAACTTTAGCCGCGATCGCGCAATGGATCCGAGGCTCCCTCCGGTTTTCGCGTCGAGCCTCAAGGCCGCCTGTCCCGAGCGTGGCGAT
GATCCAGGCTTGGTGCTGCCCTTCGATCCCTCCACTCCATTCGCCTTCGACAACTCCTACTACAAGACCCTCGTCGCTGGAAACGCGCTGCTCATCTCGGACGAGACGCTCCTCGCCAAG
CGCAAGACGAGGGAGATGATCAGGGAATTCGCGAGAGACGAGCAAAAGTTCTACCAGGAATTTGGCGCCGCGATGCAAAGACTGTCGAGCGTTGGAGTGAAGGTTGGGAGCGATGGCGAC
GTGAGGAGAGATTGCACGGCTTTTGATCGGTAG

Retrieve as FASTA