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Entry information : SmAPx01-1_0 (SmAPx01a_0 / Selmo1_0-PACid_15418073)
Entry ID 3324
Creation 2010-02-09 (Christophe Dunand)
Last sequence changes 2010-02-09 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2014-12-09 (Christophe Dunand)
Peroxidase information: SmAPx01-1_0 (SmAPx01a_0 / Selmo1_0-PACid_15418073)
Name (synonym) SmAPx01-1_0 (SmAPx01a_0 / Selmo1_0-PACid_15418073)
Class Ascorbate peroxidase    [Orthogroup: APx2001]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation Cytosolic
Tissue type Whole plant
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmAPx01-1_0
start..stop		 S start..stop
SmAPx01-2_8 514 0 1..250 1..250
SstaAPx 511 0 1..250 1..250
SapAPx01 476 1.63e-173 1..250 1..250
SlAPx01 474 8.73e-173 1..250 1..250
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2241373..2241457 83 N° 2 2241268..2241301 32 N° 3 2241021..2241195 173 N° 4 2240827..2240892 64
N° 5 2240617..2240751 133 N° 6 2240476..2240555 78 N° 7 2240318..2240420 101 N° 8 2240182..2240256 73
complement(join(2240182..2240256,2240318..2240420,2240476..2240555,2240617..2240 751,2240827..2240892,2241021..2241195,2241268..2241301,2241373..2241457))


exon

Literature and cross-references SmAPx01-1_0 (SmAPx01a_0 / Selmo1_0-PACid_15418073)
Literature Weng,J.-K., Tanurdzic,M. and Chapple,C. Functional analysis and comparative genomics of expressed sequence tags from the lycophyte Selaginella moellendorffii. BMC Genomics 6 (1), 85 (2005
DNA ref. Phytozome 12:   scaffold_0 (2241457..2240182)
mRNA ref. JGI transcript:   270176
EST ref. GenBank:   DN839337  FE505259.1
Protein sequence: SmAPx01-1_0 (SmAPx01a_0 / Selmo1_0-PACid_15418073)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   250
PWM (Da):   %s   27417.93 Transmb domain:   %s   i7-26o
PI (pH):   %s   6.24
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGKSYPAVSEEYKAAVEKAKRKLRGFIAEKNCAPLMLRLAWHSAGTYDCQSKTGGPFGTMKLAEELGHTANNGLDIAVKLLQPIKDQFPILSYGDFYLAGVVAVEVTGGPEIPFHPGRVD
KPTCPMEGRLPDATKGADHLRDVFVKHMGLTDKDIVALSGGHTLGRAHKERSGFEGPWTHNPLQFDNSYFTILLSGEQEGILTLPTDKVLVEDPSFRPLVELYADEEAFFKDYTEAHLKL
SELGFAEE*

Retrieve as FASTA  
Remarks Complete sequence from genomic (7 introns and extra introns in 5'UTR), ESTs (FE436893.1, FE474871.1, FE468290.1, DN838255) and RNA seq.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGAAAATCTTACCCGGCCGTGAGCGAGGAGTACAAGGCCGCCGTGGAGAAGGCCAAGAGGAAGCTCCGCGGCTTCATCGCAGGCAAGATCGGCGGATCGAAGCTTGAAAATTTCTAG
TCTTTCTGACCCTTTGTTTCCGATCTTTTCTCGCAGAGAGAAGAACTGTGCGCCATTGATGCTCCGCCTTGCGTAAGTCTCTTGTCCTCTTTTTCTTTGGTTTCGCCTCTTCTTGTAAAG
CTCACGGCTCGCTTTGTGGAATAGATATGGCACTCGGCGGGAACTTACGATTGCCAGTCCAAGACCGGTGGTCCTTTTGGCACCATGAAGCTCGCTGAGGAGCTTGGCCATACCGCGAAC
AATGGTCTCGACATCGCCGTGAAGCTGCTACAGCCAATCAAGGACCAGTTCCCCATCTTGAGCTATGGCGACTTCTATCAGGTCCTTTGTTTGCTTTCCTTCGTTTGGTTTTTCCCTTTA
GTGCTGTGACGCTACCTATCTCGAAAGATAGTGTCTGGAATTAGTGCCATTTCGATAAGACTTGGTTCTTATAGATTATTTTTTTACAGCTCTTGCGGGAGTCGTTGCTGTGGAAGTCAC
TGGTGGCCCCGAGATTCCATTCCATCCCGGGAGAGTGGTGAGTTTTGATATTCGATTTTCAATTGGTTTCTCGTGGAATGATGTAACCAAGCAATGCCTTGGATGGATACAGGAGACAAG
CCAACATGCCCAATGGAGGGACGGCTTCCAGATGCTACCAAGGGCGCGGATCATCTCAGAGACGTGTTTGTGAAGCATATGGGTCTCACGGACAAGGACATCGTGGCTCTCTCTGGCGGT
CACACTCTGGTAAGCTGTATCAGTCTCAGAGAAGAAAAAAATCTTACGAAACTTCGGTGTGTTTGTCCAGGGGGAAGAGCACACAAGGAACGATCCGGGTTTGAGGGCCCATGGACGCAC
AACCCTCTCCAGTTTGACAACTCCTACTTCACGTAAGCCGATCGATTTCACTTTTCTTTCTTTCCGATGTAATCGTGTTTGCTCCAGGAGATACTGCTGAGCGGTGAGCAGGAAGGCATC
CTCACTCTCCCAACCGACAAAGTTCTCGTGGAGGATCCCTCATTCCGCCCGCTCGTGGAGCTCTACGCCAAGGTAAAGAGAAATCTCCGCTTAGAACTCTGCGTGATCAAGAGATAAATT
TCGCTTGGAACAGGAGACGAGGAGGCGTTCTTCAAGGATTACACCGAAGCCCACCTCAAGCTCTCGGAGCTTGGATTCGCCGAGGAGTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGAAAATCTTACCCGGCCGTGAGCGAGGAGTACAAGGCCGCCGTGGAGAAGGCCAAGAGGAAGCTCCGCGGCTTCATCGCAGAGAAGAACTGTGCGCCATTGATGCTCCGCCTTGCA
TGGCACTCGGCGGGAACTTACGATTGCCAGTCCAAGACCGGTGGTCCTTTTGGCACCATGAAGCTCGCTGAGGAGCTTGGCCATACCGCGAACAATGGTCTCGACATCGCCGTGAAGCTG
CTACAGCCAATCAAGGACCAGTTCCCCATCTTGAGCTATGGCGACTTCTATCAGCTTGCGGGAGTCGTTGCTGTGGAAGTCACTGGTGGCCCCGAGATTCCATTCCATCCCGGGAGAGTG
GACAAGCCAACATGCCCAATGGAGGGACGGCTTCCAGATGCTACCAAGGGCGCGGATCATCTCAGAGACGTGTTTGTGAAGCATATGGGTCTCACGGACAAGGACATCGTGGCTCTCTCT
GGCGGTCACACTCTGGGAAGAGCACACAAGGAACGATCCGGGTTTGAGGGCCCATGGACGCACAACCCTCTCCAGTTTGACAACTCCTACTTCACGATACTGCTGAGCGGTGAGCAGGAA
GGCATCCTCACTCTCCCAACCGACAAAGTTCTCGTGGAGGATCCCTCATTCCGCCCGCTCGTGGAGCTCTACGCCAAGGACGAGGAGGCGTTCTTCAAGGATTACACCGAAGCCCACCTC
AAGCTCTCGGAGCTTGGATTCGCCGAGGAGTAA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGAAAAT CTTACCCGGC CGTGAGCGAG GAGTACAAGG CCGCCGTGGA GAAGGCCAAG AGGAAGCTCC GCGGCTTCAT CGCAGAGAAG AACTGTGCGC CATTGATGCT CCGCCTTGCA  TGGCACTCGG CGGGAACTTA CGATTGCCAG TCCAAGACCG GTGGTCCTTT TGGCACCATG AAGCTCGCTG AGGAGCTTGG CCATACCGCG AACAATGGTC TCGACATCGC CGTGAAGCTG  CTACAGCCAA TCAAGGACCA GTTCCCCATC TTGAGCTATG GCGACTTCTA TCAGCTTGCG GGAGTCGTTG CTGTGGAAGT CACTGGTGGC CCCGAGATTC CATTCCATCC CGGGAGAGTG  GACAAGCCAA CATGCCCAAT GGAGGGACGG CTTCCAGATG CTACCAAGGG CGCGGATCAT CTCAGAGACG TGTTTGTGAA GCATATGGGT CTCACGGACA AGGACATCGT GGCTCTCTCT  GGCGGTCACA CTCTGGGAAG AGCACACAAG GAACGATCCG GGTTTGAGGG CCCATGGACG CACAACCCTC TCCAGTTTGA CAACTCCTAC TTCACGATAC TGCTGAGCGG TGAGCAGGAA  GGCATCCTCA CTCTCCCAAC CGACAAAGTT CTCGTGGAGG ATCCCTCATT CCGCCCGCTC GTGGAGCTCT ACGCCAAGGA CGAGGAGGCG TTCTTCAAGG ATTACACCGA AGCCCACCTC 
AAGCTCTCGG AGCTTGGATT CGCCGAGGAG TAA 

Retrieve as FASTA