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Entry information : MtPrx09 (Medtr4g125940.1[4.0])
Entry ID 336
Creation 2006-01-18 (Christophe Dunand)
Last sequence changes 2014-07-15 (Christophe Dunand)
Sequence status complete
Reviewer Catherine Mathe
Last annotation changes 2016-04-07 (Catherine Mathe)
Peroxidase information: MtPrx09 (Medtr4g125940.1[4.0])
Name (synonym) MtPrx09 (Medtr4g125940.1[4.0])
Class Class III peroxidase    [Orthogroup: Prx029]
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Medicago
Organism Medicago truncatula (barrel medic)    [TaxId: 3880 ]
Cellular localisation N/D
Tissue types Roots
Roots nodules
Inducers Glomus intraradices infection
Phosphate starvation
Sinorhizobium inoculation
Repressor N/D
Best BLASTp hits
Perox score E-value MtPrx09
start..stop		 S start..stop
LjPrx26 563 0 10..330 13..333
GmPrx235 552 0 1..330 1..330
GmPrx76 550 0 1..330 1..330
GmPrx288 540 0 9..330 10..332
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '336' 'join(52301027..52301245,52301504..52301689,52301880..52302045,52302426..52302847)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 52301027..52301245 217 N° 2 52301504..52301689 184 N° 3 52301880..52302045 164 N° 4 52302426..52302847 420
join(52301027..52301245,52301504..52301689,52301880..52302045,52302426..52302847 )


exon

Literature and cross-references MtPrx09 (Medtr4g125940.1[4.0])
Literature Fedorova,M. et al., unpublished, Harrison,M.J. et al., unpublished.
DNA ref. Phytozome 12:   chr4 (52301027..52302847)
Cluster/Prediction ref. Phytozome Gene 12:   31113266 UniGene:   Mtr.14019
Omic ref. Gene atlas:   Mtr.28457.1.S1_s_at  Mtr.37598.1.S1_at Legoo:   Mtr.28457.1.S1_s_at  Mtr.37598.1.S1_at
Protein sequence: MtPrx09 (Medtr4g125940.1[4.0])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   330 (305)
PWM (Da):   %s   35807.83 (32593.3) Transmb domain:   %s   i7-24o
PI (pH):   %s   6.97 (5.70) Peptide Signal:   %s   cut: 26 range:26-330
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MKNSFRWSCYYFVLINMFMLHFTVRSQLTTDFYKSSCPNLTKIVR
KEVVKALKNEMRMGASLLRLHFHDCFVNGCDGSILLDGGDDFEKSAFPNINSVRGFDVVDTIKTAVESACSGVVSCADILAIAARDSVLLSGGPSWSVMLGRRDGTISNGSLANVVLPSPFDPLDTIVSKFTNVGLNLTDVVSLSGAH
TIGRARCALFSNRLFNFSGTGSPDSTLETGMLTDLQNLCPQTGDGNTTAVLDRNSTDLFDNHYYKNLLNGKGLLSSDQILISTDEANSTSKPLVQSYNDNATLFFGDFVKSMIKMGNINP
KTGSDGEIRKSCRVINS

Retrieve as FASTA  
Remarks Complete sequence from 15 ESTs and genomic (chromo 4, 3 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAGAACTCATTTAGATGGAGCTGTTATTACTTTGTGCTAATCAATATGTTCATGTTGCATTTTACAGTAAGGTCCCAACTGACAACAGACTTCTATAAGTCATCTTGTCCTAACCTT
ACAAAGATAGTAAGGAAAGAGGTTGTAAAAGCTCTAAAGAATGAGATGAGAATGGGTGCTTCTTTGCTTCGTCTTCACTTTCATGATTGCTTTGTCAATATGTAAGCTTAATTACTTGAG
ATACATGTACATGCATGCATAGTTTTTTATTTATTATATGCATACATAGTATTAAGAAAAATGCTATTTCTAGCGAAGGAACTACCTAGCGAATTTTTTCCGGAAACATTATTTCTCACA
AACATGACAAAGTCCAAAACAACGTACAAATTCGTGATAACAATATTTTGTGACATTTAGCATTTTACAACATTTTTTATAACAAGGATTCACTTTCAAATTATTATTTTGATTATCAGG
GTTGTGATGGATCAATATTATTAGATGGTGGCGATGATTTTGAAAAGTCTGCATTTCCTAATATCAACTCTGTTAGAGGATTTGATGTTGTTGATACAATCAAAACGGCAGTGGAAAGTG
CGTGTAGCGGAGTTGTCTCATGTGCTGATATACTTGCCATAGCTGCCAGAGATTCTGTTCTTCTTTTGTAATTATATATTCCAATCCCATAACGTTCTTAATTTATTCATATACATATTT
TGTTTATAGTCAAGGAGCATGCATAAAACTAAATATGAAATCTAATTTCAATTAATTACTTATATAGACTATAATAATAAATTTCTTTCATACTTTTTAGAAAAACTATATCATGACCAT
TATATAATGTTTGGCAGAGTGGTGGTCCTTCATGGAGTGTTATGTTAGGACGAAGAGACGGAACAATCTCAAATGGATCTCTAGCAAATGTGGTGCTTCCTTCTCCATTTGACCCACTAG
ATACTATTGTGTCAAAGTTTACCAATGTAGGGCTCAATCTCACAGATGTTGTTTCTTTATCAGAGGTAAATAGTGAATTTCACTGTGGAGATCCATAGAAATTATATAGGCCTAAAATAG
GGGATGATCCTATTTTTAGAATTGAGTTAGACTCAAATCTAAAGCCCTTAAAGATTGTTAGCTAGTTTGGAAGAGATGGCAACTCTTAGAATTTAAGTTTGATTTTTAATTTTTTTTATA
TTAACCTTCTGATTTTAGTAAAAGCGAACCATAGTAACTAGGTATTCAACGATCGGGTACATAAAGTACGGTCAATAATTGTAAAAATCAAATGTTGAACTTGTTGCTCCTAAACGATTT
GACCTTAAGTAACACTTGAATCGATCTACTTGCTTAATTTTACCTTTAATTAAATTGCTCATATGTATATGCTTAATTTGTGAAGGTGCTCATACGATTGGGAGAGCAAGATGTGCACTG
TTTAGCAATAGATTGTTCAATTTTTCTGGAACAGGTTCACCAGACAGTACACTGGAAACCGGTATGCTAACCGACCTACAAAATTTGTGTCCTCAAACTGGGGATGGAAACACAACTGCA
GTTCTTGATAGGAACTCAACTGATCTCTTTGATAATCATTACTATAAGAACTTGCTTAACGGAAAGGGTCTTCTTAGTTCTGATCAGATTTTGATTTCTACTGATGAGGCAAATTCAACT
TCTAAACCATTAGTTCAAAGCTACAACGATAATGCTACGCTTTTCTTTGGAGACTTTGTCAAATCTATGATCAAGATGGGGAATATAAATCCAAAAACTGGGTCTGATGGAGAGATTAGG
AAGAGCTGTAGAGTGATAAATTCGTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAGAACTCATTTAGATGGAGCTGTTATTACTTTGTGCTAATCAATATGTTCATGTTGCATTTTACAGTAAGGTCCCAACTGACAACAGACTTCTATAAGTCATCTTGTCCTAACCTT
ACAAAGATAGTAAGGAAAGAGGTTGTAAAAGCTCTAAAGAATGAGATGAGAATGGGTGCTTCTTTGCTTCGTCTTCACTTTCATGATTGCTTTGTCAATGGTTGTGATGGATCAATATTA
TTAGATGGTGGCGATGATTTTGAAAAGTCTGCATTTCCTAATATCAACTCTGTTAGAGGATTTGATGTTGTTGATACAATCAAAACGGCAGTGGAAAGTGCGTGTAGCGGAGTTGTCTCA
TGTGCTGATATACTTGCCATAGCTGCCAGAGATTCTGTTCTTCTTAGTGGTGGTCCTTCATGGAGTGTTATGTTAGGACGAAGAGACGGAACAATCTCAAATGGATCTCTAGCAAATGTG
GTGCTTCCTTCTCCATTTGACCCACTAGATACTATTGTGTCAAAGTTTACCAATGTAGGGCTCAATCTCACAGATGTTGTTTCTTTATCAGGTGCTCATACGATTGGGAGAGCAAGATGT
GCACTGTTTAGCAATAGATTGTTCAATTTTTCTGGAACAGGTTCACCAGACAGTACACTGGAAACCGGTATGCTAACCGACCTACAAAATTTGTGTCCTCAAACTGGGGATGGAAACACA
ACTGCAGTTCTTGATAGGAACTCAACTGATCTCTTTGATAATCATTACTATAAGAACTTGCTTAACGGAAAGGGTCTTCTTAGTTCTGATCAGATTTTGATTTCTACTGATGAGGCAAAT
TCAACTTCTAAACCATTAGTTCAAAGCTACAACGATAATGCTACGCTTTTCTTTGGAGACTTTGTCAAATCTATGATCAAGATGGGGAATATAAATCCAAAAACTGGGTCTGATGGAGAG
ATTAGGAAGAGCTGTAGAGTGATAAATTCGTAG

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATAGAGGAAA ACATGAAAAC TAGATACAAT ATACAAACAA AAATGTCCTT ATACTATAAT AATACATATC AACTGAGACT AGTTTTTTCT TGGAGAAAGC AAACCAGATG AAGTTGAAGC  CCTTGAAATT ACTGAGACAA TGGAATGAAA AGCACTTGCT GCTATCTTTG ATTTTATTTG TCCTCTTTTT GGAAGAGACT TTTTGCCTCT AAACCTGTTC CTGTTGTTGA CAACTTCAGC  AGATGCAACA CGACCCATTC TAGTGTTCAT TATTATCTTT TAACAACAGA AATAAACTGA TATATGCTGC ATATCGCTGC TTTTGTCTTA GGCTACTAAT TAAGTAATTA ACGATGAAGA  ACTCATTTAG ATGGAGCTGT TATTACTTTG TGCTAATCAA TATGTTCATG TTGCATTTTA CAGTAAGGTC CCAACTGACA ACAGACTTCT ATAAGTCATC TTGTCCTAAC CTTACAAAGA  TAGTAAGGAA AGAGGTTGTA AAAGCTCTAA AGAATGAGAT GAGAATGGGT GCTTCTTTGC TTCGTCTTCA CTTTCATGAT TGCTTTGTCA ATGGTTGTGA TGGATCAATA TTATTAGATG  GTGGCGATGA TTTTGAAAAG TCTGCATTTC CTAATATCAA CTCTGTTAGA GGATTTGATG TTGTTGATAC AATCAAAACG GCAGTGGAAA GTGCGTGTAG CGGAGTTGTC TCATGTGCTG  ATATACTTGC CATAGCTGCC AGAGATTCTG TTCTTCTTAG TGGTGGTCCT TCATGGAGTG TTATGTTAGG ACGAAGAGAC GGAACAATCT CAAATGGATC TCTAGCAAAT GTGGTGCTTC  CTTCTCCATT TGACCCACTA GATACTATTG TGTCAAAGTT TACCAATGTA GGGCTCAATC TCACAGATGT TGTTTCTTTA TCAGGTGCTC ATACGATTGG GAGAGCAAGA TGTGCACTGT  TTAGCAATAG ATTGTTCAAT TTTTCTGGAA CAGGTTCACC AGACAGTACA CTGGAAACCG GTATGCTAAC CGACCTACAA AATTTGTGTC CTCAAACTGG GGATGGAAAC ACAACTGCAG  TTCTTGATAG GAACTCAACT GATCTCTTTG ATAATCATTA CTATAAGAAC TTGCTTAACG GAAAGGGTCT TCTTAGTTCT GATCAGATTT TGATTTCTAC TGATGAGGCA AATTCAACTT  CTAAACCATT AGTTCAAAGC TACAACGATA ATGCTACGCT TTTCTTTGGA GACTTTGTCA AATCTATGAT CAAGATGGGG AATATAAATC CAAAAACTGG GTCTGATGGA GAGATTAGGA  AGAGCTGTAG AGTGATAAAT TCGTAGAAAT ATGTTTTAGG GCTTTGCAAA ATATTAAATA AGTGGAAGAT TAGGAGTGTG TCTTCCTTGT GATAGTGCAG TTATGTTGTT GTTGCTAACT 
TGTAATGTTG TTTGTAAGGG TGTGCTTCTC GAACAAAATA TAATCATACA AAAATGAATA AAATTCTAAA TATAGGATTG TTGTTTCTAG CTTATGTTGG ATT 

Retrieve as FASTA