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Entry information : MtPrx28 (Medtr2g084020.1[4.0] / Medtr2g084020.1[3.5] / Medtr2g098060.1[3.0])
Entry ID 353
Creation 2005-06-16 (Christophe Dunand)
Last sequence changes 2010-09-16 (Haythem Mhadhbi)
Sequence status complete
Reviewer Catherine Mathe
Last annotation changes 2016-05-20 (Catherine Mathe)
Peroxidase information: MtPrx28 (Medtr2g084020.1[4.0] / Medtr2g084020.1[3.5] / Medtr2g098060.1[3.0])
Name (synonym) MtPrx28 (Medtr2g084020.1[4.0] / Medtr2g084020.1[3.5] / Medtr2g098060.1[3.0])
Class Class III peroxidase    [Orthogroup: Prx035]
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Medicago
Organism Medicago truncatula (barrel medic)    [TaxId: 3880 ]
Cellular localisation N/D
Tissue types Cell culture
Roots
Inducer Nitrogen starvation
Repressor N/D
Best BLASTp hits
Perox score E-value MtPrx28
start..stop		 S start..stop
MtPrx43 596 0 1..318 1..318
PsPrx11 590 0 1..318 1..318
MtPrx57 549 0 1..318 1..317
MtPrx97 548 0 1..318 1..317
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '353' 'complement(join(35289292..35289846,35290658..35290849,35290936..35291145))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 35290936..35291145 208 N° 2 35290658..35290849 190 N° 3 35289292..35289846 553  
complement(join(35289292..35289846,35290658..35290849,35290936..35291145))


exon

Literature and cross-references MtPrx28 (Medtr2g084020.1[4.0] / Medtr2g084020.1[3.5] / Medtr2g098060.1[3.0])
Literature Torres-Jerez,I. et al., unpublished
DNA ref. Phytozome 12:   chr2 (35291145..35289292)
EST ref. GenBank:   BF520475
Cluster/Prediction ref. Phytozome Gene 12:   31066518
Omic ref. Gene atlas:   Mtr.11354.1.S1_at  Mtr.45378.1.S1_at
Protein sequence: MtPrx28 (Medtr2g084020.1[4.0] / Medtr2g084020.1[3.5] / Medtr2g098060.1[3.0])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   318 (295)
PWM (Da):   %s   34080.22 (31640.9)  
PI (pH):   %s   8.49 (8.39) Peptide Signal:   %s   cut: 24 range:24-318
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MATLNKLFVTLSIFSLLACSTNAQLVNNFYGTTCPSLQTIVRREM
TKAINNEARIGASILRLFFHDCFVNGCDGSILLDDTSTFTGEKNAGPNKNSARGFEVIDAIKTSVEAACSATVSCADILALATRDGIALLGGPSWVVPLGRRDARTASQSAANSQIPGPSSDLSTLTTMFRNKGLTLNDLTVLSG
AHTIGQAECQFFRTRIYNETNIDTNFATLRKSNCPTSGGDINLAPLDSVSPVTFDNNYYNDLVANKGLLHSDQALFNGVGSQVSLVRTYSRNNIAFKRDFAAAMVKMSRISPLTGTNGEI
RKNCRLVN*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 2, 2 introns) and 4 ESTs (BF520475, BF644020, BF650207 and AL368930). ESTs are incorrectly compiled in the UniGene Mtr.9089 and TC89194 TIGR. The ESTs correspond to MtPrx28 and MtPrx43.
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGACCTTAAACAAACTATTTGTTACACTCTCTATTTTTTCTCTCTTAGCTTGTTCTACCAATGCACAACTTGTTAATAACTTCTATGGTACAACTTGCCCTAGCCTTCAAACCATT
GTGCGCAGGGAAATGACCAAAGCTATCAATAATGAAGCTCGAATTGGTGCTTCTATACTTCGTTTGTTCTTCCATGATTGCTTTGTAAATGTAAGTCCACTTTAAGATAATGTTGAAAAA
TAATTTGTTTATTTGCATTAGACATTAACATGTCAATTTATTTGCTAATTTTGTAGGGGGATGTGATGGATCAATCTTATTGGATGACACTTCCACATTTACCGGTGAGAAAAATGCTGG
ACCTAACAAAAATTCAGCTAGGGGTTTTGAAGTGATTGATGCAATTAAAACTAGTGTTGAAGCTGCTTGCAGTGCCACTGTCTCTTGTGCTGATATTCTTGCACTTGCAACTAGAGATGG
AATTGCTCTGGTTAGTCACCCATTTCTTTCTTCATTTTTCTTTAAGAGTTTTGTTTTATTTTTTATTTCTATAAGTGTTTGGTATGGGACTTGTTTTCAAACCATGTCCCCCAAACCTCT
TTTAACCTTTTCTCACATATTTTAGATCGTCATCGTGTCAACTCTTGTTATTTTATGGGACCCTCAAGATAAAATAGATATTTTGGACAATGATGCATCACATAATACAACATGATCAAA
TTATATATGAAAAAAAAAAAAAAAACAGAAGTATCACAATATACAACCAGTCTTTTGTCAACCATGTCTCTTTATCAAAGATCGCAGTCAAATCACTCATTATACTAAAAAGGAAATTAT
CTAAACGGTTTTATTATTATAAGATGAAAGGTGACACTTATTTAAACTTTAGTCCGATCTTATTTTATTTGACTTGACTTTTTTTTTCTCAATACAATTAATGCCTCATGTTTAACACTA
TTATATTGAGTTTAATTCATTTGTGTAAAAGCAGTTTATAAGATGATGGACGTCACTGTTTATAACTCTAATCAAATTTTATCTTTATTATATGCAAGACTTGAGTGTTTTTAATAAATT
TCTCTAATTATATGATTAAATTTAATGATGAGAGAATTAGATGAATTTTATTTATTTTCTCTAAATTTAATTGCTAATTCTATTTTTTAGTTATATATATCCATTCCAAAAAAGCAAGTA
CAAAATACAAATACCAAATATAAACTATAGTCTTATGGTGCTTTATACTAGTTTTGATTCATCATGACTTTCTTAATCTCAATAATTAATTTATTTTGTAGCTCTTGGAGGTCCTTCATG
GGTAGTACCACTTGGAAGAAGAGATGCAAGAACAGCAAGTCAAAGTGCAGCAAATAGCCAAATTCCAGGACCATCTTCTGACCTATCCACACTCACTACCATGTTTAGAAACAAAGGTCT
AACATTAAATGACCTTACTGTCCTTTCTGGTGCACACACCATAGGTCAAGCAGAATGTCAATTTTTCAGAACTCGTATATACAACGAAACCAACATTGACACAAACTTTGCAACCTTAAG
AAAATCAAATTGTCCTACTTCTGGTGGTGACATAAATTTGGCACCTCTTGATTCTGTCTCTCCAGTTACTTTTGACAACAATTACTATAATGACCTTGTTGCTAATAAAGGACTTCTTCA
TTCTGATCAAGCTCTTTTCAATGGTGTTGGTTCTCAAGTTTCTTTGGTTAGGACTTATAGTAGAAATAATATTGCTTTTAAAAGAGACTTTGCAGCTGCTATGGTGAAGATGAGTAGAAT
TAGTCCTCTAACTGGGACTAATGGGGAGATTAGAAAGAATTGCAGGCTTGTGAACTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGACCTTAAACAAACTATTTGTTACACTCTCTATTTTTTCTCTCTTAGCTTGTTCTACCAATGCACAACTTGTTAATAACTTCTATGGTACAACTTGCCCTAGCCTTCAAACCATT
GTGCGCAGGGAAATGACCAAAGCTATCAATAATGAAGCTCGAATTGGTGCTTCTATACTTCGTTTGTTCTTCCATGATTGCTTTGTAAATGGATGTGATGGATCAATCTTATTGGATGAC
ACTTCCACATTTACCGGTGAGAAAAATGCTGGACCTAACAAAAATTCAGCTAGGGGTTTTGAAGTGATTGATGCAATTAAAACTAGTGTTGAAGCTGCTTGCAGTGCCACTGTCTCTTGT
GCTGATATTCTTGCACTTGCAACTAGAGATGGAATTGCTCTGCTTGGAGGTCCTTCATGGGTAGTACCACTTGGAAGAAGAGATGCAAGAACAGCAAGTCAAAGTGCAGCAAATAGCCAA
ATTCCAGGACCATCTTCTGACCTATCCACACTCACTACCATGTTTAGAAACAAAGGTCTAACATTAAATGACCTTACTGTCCTTTCTGGTGCACACACCATAGGTCAAGCAGAATGTCAA
TTTTTCAGAACTCGTATATACAACGAAACCAACATTGACACAAACTTTGCAACCTTAAGAAAATCAAATTGTCCTACTTCTGGTGGTGACATAAATTTGGCACCTCTTGATTCTGTCTCT
CCAGTTACTTTTGACAACAATTACTATAATGACCTTGTTGCTAATAAAGGACTTCTTCATTCTGATCAAGCTCTTTTCAATGGTGTTGGTTCTCAAGTTTCTTTGGTTAGGACTTATAGT
AGAAATAATATTGCTTTTAAAAGAGACTTTGCAGCTGCTATGGTGAAGATGAGTAGAATTAGTCCTCTAACTGGGACTAATGGGGAGATTAGAAAGAATTGCAGGCTTGTGAACTAA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GTAAATCAAA ATAGATAATT TTATATTGAA TGGCGACCTT AAACAAACTA TTTGTTACAC TCTCTATTTT TTCTCTCTTA GCTTGTTCTA CCAATGCACA ACTTGTTAAT AACTTCTATG  GTACAACTTG CCCTAGCCTT CAAACCATTG TGCGCAGGGA AATGACCAAA GCTATCAATA ATGAAGCTCG AATTGGTGCT ACTATACTTC GTTTGTTCTT CCATGATTGC TTTGTAAATG  GATGTGATGG ATCAATCTTA TTGGATGACA CTTCCACATT TACCGGTGAG AAAAATGCTG GACCTAACAA AAATTCAGCT AGGGGTTTTG AAGTGATTGA TGCAATTAAA ACTAGTGTTG  AAGCTGCTTG CAGTGCCACT GTCTCTTGTG CTGATATTCT TGCACTTGCA ACTAGAGATG GAATTGCTCT GCTTGGAGGT CCTTCATGGG TAGTACCACT TGGAAGAAGA GATGCAAGAA  CAGCAAGTCA AAGTGCAGCA AATAGCCAAA TTCCAGGACC ATCTTCTGAC CTATCCACAC TCACTACCAT GTTTAGAAAC AAAGGTCTAA CATTAAATGA CCTTACTGTC CTTTCTGGTG  CACACACCAT AGGTCAAGCA GAATGTCAAT TTTTCAGAAC TCGTATATAC AACGAAACCA ACATTGACAC AAACTTTGCA ACCTTAAGAA AATCAAATTG TCCTACTTCT GGTGGTGACA  TAAATTTGGC ACCTCTTGAT TCTGTCTCTC CAGTTACTTT TGACAACAAT TACTATAATG ACCTTGTTGC TAATAAAGGA CTTCTTCATT CTGATCAAGC TCTTTTCAAT GGTGTTGGTT  CTCAAGTTTC TTTGGTTAGG ACTTATAGTA GAAATAATAT TGCTTTTAAA AGAGACTTTG CAGCTGCTAT GGTGAAGATG AGTAGAATTA GTCCTCTAAC TGGGACTAAT GGGGAGATTA  GAAAGAATTG CAGGCTTGTG AACTAATTGA TTAATTAGAT AATCAAAGTC ATAAAGGTTG ACTAGATCTT GGACACATTG GCAATTGTAG TATTGTTGAT GCTACTTTAA TTTGATAGTT 
TCAATGTTTG TAGTTCCACA AATATATATG TTGTTTGTCT TACTTAAATC AATGAATGGA AAATGCTAGT TTTGTGTTGG ATTCAAAAAA AAAAAAAAAA A 

Retrieve as FASTA