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Entry information : AtAPx07 (At4g09010 / APX4 / THYLAKOID_LUMEN 29 / TL29)
Entry ID 3920
Creation 2006-09-08 (Filippo Passardi)
Last sequence changes 2015-06-03 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2015-12-15 (Christophe Dunand)
Peroxidase information: AtAPx07 (At4g09010 / APX4 / THYLAKOID_LUMEN 29 / TL29)
Name (synonym) AtAPx07 (At4g09010 / APX4 / THYLAKOID_LUMEN 29 / TL29)
Class Ascorbate peroxidase    [Orthogroup: APx2004]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis thaliana    [TaxId: 3702 ]
Cellular localisation Thylakoid lumen
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AtAPx07
start..stop		 S start..stop
BstrAPx07 673 0 1..349 1..348
NoffAPx07-1A 659 0 1..349 1..347
CrubAPx07 657 0 1..349 1..344
NoffAPx07-1B 656 0 1..349 1..347
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 5779243..5779338 94 N° 2 5779062..5779163 100 N° 3 5778825..5778912 86 N° 4 5778643..5778743 99
N° 5 5778533..5778573 39 N° 6 5778327..5778457 129 N° 7 5778127..5778233 105 N° 8 5777911..5778048 136
N° 9 5777698..5777832 133 N° 10 5777502..5777612 109  
complement(join(5777502..5777612,5777698..5777832,5777911..5778048,5778127..5778 233,5778327..5778457,5778533..5778573,5778643..5778743,5778825..5778912,5779062. .5779163,5779243..5779338))


exon

Literature and cross-references AtAPx07 (At4g09010 / APX4 / THYLAKOID_LUMEN 29 / TL29)
Literature REFERENCE 1 Spiegel,L.A., Huang,E.N., Nascimento,L.U., de la Bastide,M., Vil,D.M., Preston,R.R., Matero,A., Shah,R., O'Shaughnessy,A., Rodriguez,M., Shekher,M., Schutz,K., See,L.H., Swaby,I., Habermann,K., Dedhia,N.N., Mewes,H.W., Lemcke,K. and Mayer,K.F.X. Unpublished
REFERENCE 2 Robben,J., Grymonprez,B., Bastiaens,I., Volckaert,G., Mewes,H.W., Lemcke,K. and Mayer,K.F.X. Unpublished
REFERENCE 3
Lamar,B., Stoneking,T., Stumpf,J., Mewes,H.W., Lemcke,K. and Mayer,K.F.X. Unpublishe (16-APR-2005)
Protein ref. UniProtKB:   P82281
DNA ref. Phytozome 12:   Chr4 (5779338..5777502)
Cluster/Prediction ref. Phytozome Gene 12:   19647518
Omic ref. AtProteome:   At4g09010 ATTED-II:   At4g09010 e-FP Browser:   At4g09010 ePlant:   At4g09010 TAIR:   At4g09010
Protein sequence: AtAPx07 (At4g09010 / APX4 / THYLAKOID_LUMEN 29 / TL29)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   349
PWM (Da):   %s   37797.46 Transmb domain:   %s   i7-26o
PI (pH):   %s   8.42
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGGVSFLSTVPSFTNTTNHQHLTTLSSSSHRSAVIRCSKIEPQVSGESLAFHRRDVLKLAGTAVGMELIGNGFINNVGDAKAADLNQRRQRSEFQSKIKILLSTTIKAKPELVPSLLKLA
LNDAMTYDATKSGGANGSIRFSSELSRAENEGLSDGLSLIEEVKKEIDSISKGGPISYADIIQLGQSAVKFTYLASAIRKCGGNEEKGNLLYTAYGSAGQWGLFDRNFGRSDATEADPEG
RVPQWGKATVQEMKDKFIAVGLGPRLAVMSAFLGPDQAATEQLLATDPQVAPWVQKYQRSRETVSQTDYEVDLITAFTKLSCLGQQINFEAYTYPVERINLSKLKL*

Retrieve as FASTA  
Remarks Complete sequence from genomic DNA and 15 ESTs (TIGR, UniGene At.22637). According to Teixeira FK et al. (J.Mol.Evol. (2004) pp. 761-770), it is not an APx, as it lacks heme-binding site, active site and is more distant to other APx proteins than CCP.
Promoter►
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Send to cis Analysis
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
AATTAGTAAC TAGATAATGC CAAATTGTTT GGAAGTTAGA TATATGTAAT AAGGAAGCAA TTTACATGAC TTTAAGAGAC CTGATTCTTT AAGAGGAAAG CTAAGAATTT GAACTGAATT  TTGGCAAATT GGTCATCATA GCATTGTTGT AGATGTATAT CATAAAGTAT TTGCATTTTT CCGTTCTTTC TTTTACTTTT TCTCTAAATT TGTGACAATG GTTTGCATGA GGATATGTTG  TGCAGCCAGA TAAATTGCCA AACTACGTAG TCCCTGATTT GACTGGCTTT AAGGTTTTTA TTCTACCCTA AACTCTTCTG TTACTTTTCT TTGATTCCTC GATATTGAAC ATGAGAACAA  AACAATAGTG AATTCCTTCG GATATCTTTT TACAAGTCGT AAACTTGTAA TGGTTTGAAG CTCCTTAGGT TTGTGATCCT GATGATCTTA TTCGTTTTAG GTTGTGTTAG GAACCTGAAA  TGGAATGCTT ACTTCTTGCA TTAACCTTGT TGTGTTTTGC ATGCCACCCT AAATTCTTCT GTTCCTTTCC TTTGATTCCT CTATATAGAT AGCCGAGTAT GTAACTTGCA TCCTAATTGA  ACATTAGAAC AAATTCCCTT TTTAAACCGT TTACATGTCT TACTATTCAA AGCTCCTTAA GCATGTGTGA TCCTGACGAT TTTTTTTCCG GTCTTAAGTT TTGTGTTAGG AACCTGAAAT  AGAATGCTAG CTTAATGTAT AACGCAAGCT TTGTTGTGTG ATCTAGCTTT GCTGATGGAA CATTTGTATT TTATAGCTGA AACCATATGT ATCTCAGTGC CCTTTAGACG TCAACAAAAC  AAACGAGTCA ACTGAAGCTT CCAAGTGACG AAGTTAGAAG AAACATGTTT TTAACTTTGA AGTCTTCATT AGCTTAAAGT TAAGGACTGT GTTATTCTAT CATCCTTAGA TATCTTTTGT  TACTCAACAA CTCCTAGCAA GTTATTTCGA GATTGAGTTA ATAAAATAAA AACTTTGAAT TGAATCCAAT GAATCTTAGA TTTCAATATT TCTCCACTTC TCAATTCCCT GTTTGGTAAC  TGCTACTGAA TGTGTGTACC GTTTCTATTG TAACCAACAG GTAAAACGGT AAATTAAAGC GGGACAATGA ATAAAAATCC TCAAAAACCC CAAAAAATAC TCATACTAAT TTTTATTTGC  AAGTTTAATA CCCAATATTT TTGGATTGGA ATCAAAAATA CTTCATCTAA TATTTATGGT CATAAAATAC CTCATATATT TATTATTGGT AGAATGAAAC CCGCACAAAA TTCATGTTTT  TTTTCTCCCG TTTCTCTAAT TCTAGCCGAC GTAGATGATA CTCCCCGCAA GTAACATGTG CCTTATAATG TGATCGCGTT AGTTCCCAGC TTTGTCTAGC CACCAAGAAT CATCGTCTAT  GCCGCCTGCC GTCATAGCTC TAGGGAGGAG CTGAGAGTGA GAAGGACAAG GGAAAAAATG AGAATCTCTG AAGTTGGATT GGGTGTTTTA CTGGGATTAG TGGCATTCGA TAAGTTAGTA  ACACCGAATT GTATATATAG ATTAAAAAGT ATGAGATTCA AATTTAACCC CGTTAAATAG TTCCGTTAAC GTCCGTTAAG CCGTAGGTTA ATTCTAACAA TAATTAATAT ATGAGGTATT  TTATGACAGT AAATAATTAG ATAATTTATT TTTATACCAA TTCAAAAATA TTGGGTATTA AACTTGCAAA TAAAAATTAG TATGAGTTTT TTTTGGGATT TTTAACCACA AAAAAAATCT  TTGACCTTTT AAAAAACTCT TATTGAAAAA AAAAAAAGGA GTTATATGAT GAAACCAAAT GGACCCATAT GATTGGGAGA TTTGGATAAC AGAGAATCCA CAAAAGTGTA TCCTTCACAA 
AACCAAAACA CACTCTCCAT TTTCTTCAGA CAACTCTTTC TCCTTTCTTC TCTCTTCTCT GTCTCATCAC AAACCAGAA 

Retrieve as FASTA  
Terminator +►
Send to BLAST
Send to cis Analysis
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GCTATGTACA CTATATGTAT AACATGAGAG GAAACTTCGA AATAAACCAA AGATTTTTCT TGACATTGAA ACAAAAAGAG AAGTTGAATC CATTACAAAC AAAGACACAG AAGATAGGAG  TCAAATCACG ATAAAATGGA AACAGATAAA CGAAAAATAA TAGGAATCGA GTTTTCGTAT CCACGGTTGA GAAAAGCAGC AAAAAAGGAC AAGAATTAGA CTGCCTTAGA GAGCTTGGGG  ATAAAAGGAA ATAAGAAACC AACAGAGAAA CACCTCCAAG AGAAAAACAT ATTAATGGAG AGGTTTTAGA TACTGAAATG ACAACAAAGT TGCGGTAAGA CGACTTAGGA TTGTTGCTCG  TCAGCGGGTT TTGCTGCTGC TGGTGCTGCT TCTTTGATGT CATCAGCAAC ATCGTCCTGA TTGAAAAAAA CATTTGACAA GATCATCATA ATCAGAATCA GACCACAAGA AAGAAGGATT  GAGGAATGTA TCAAAATGTA AACTAAGCAA CAACTTGATT TCCAAATCTA GTCTCCCTCA ATGGCATATA TCTTGCTCAT GGTTTCAGAA ATCACAAACA GGCTTAAGCA AGGCATAAGG  AGGAATGCAT CAAAATGTAA ACTAAACCAC TTGATATTCA ATTCGTGTCT TCCTCAATGG CTTAACAAGG CTTATGATTT CATAAATTAA GCAACAAAAC AGGATTAAAC ACATTTGACA  ATCACTAAAA TCAGAATATG ACCAAGAGAA TGCATCAAAA TGTAAACTAA ACTGTTTGTT TTCCATATCT AGACTTCCGC AATGGCTTAA CAAGGCTCAT GGTTTCAGAA ATCAAGCAAC  AAAACAGGCT TAAATACATT TGACAATCAC TAAAATCAGA ATCAGAGCCA GCAGAATGCA TCCAAATGTA AACTAAACTG TTTTATTACA AATCAAGTCT TTCTTAATGG TTTAATTATA 
GGCTAAAAGT TTCAGAGATC AAGAAACAAA AACGTTATTC 

Retrieve as FASTA  
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGAGGAGTGTCCTTCCTCTCCACTGTTCCTTCCTTCACCAACACAACCAATCATCAACATCTCACTACACTCTCTTCTTCTTCTCATCGCTCTGTGAGTTTCAACCATTGTTACATT
CTTTACTTCTAACCCATTTTACATTTCTTCTGCTAACAATTCTTCTTCTGATCAGGCGCTGTTATACGATGTTCCAAGATTGAACCTCAAGTTTCCGGTGAAAGTTTAGCTTTCCACCGC
CGTGATGTTCTCAAACTCGCCGGCACTGCAGTCGGAATGGTACCTTAACACTTGACTCGATCAAAAATTACATACACATTGGTACAAATGAGATATTGTAATGTATAGTCTGTGGCTACA
TCTTCTTGAAGTTGTCCTCTCTATGTCACATTTGATGAGTTCTTGGCAGTGATGATCTCTCTTGTTAGGAGAATTAATAGGCAACGGTTTCATTAACAATGTGGGTGATGCAAAAGCTGC
TGACTTGAATCAACGTAGACAACGATCCGAGTTTCAATGTGAGTATCTGAAACAAGAACACTAGTGTGGTACCATTAGGTTGTTATTGGCACTAAAGGTTTCACTTTTATATTATGCAGC
ACAAAGATCAAGATTTTGCTTTCAACCACCATTAAGGCTAAACCGGAGCTTGTACCTTCCTTACTCAAACTAGCTCTCAATGATGCTATGACTTATGATAAGGTCAGGCTTCATATAATG
CTCTTGTCCATCTCTCTGGTGACCCTTTAATGATACTAGCTTTTTGTCTAGGCGCTACTAAATCCGGGGGAGCCAATGGATCCATACGGTTCAGGTAGTTATATGATGTAAGAACATTAT
AAGAGTAATCTTTAGATGATGTCTAATGCATTCTTTTCTTTTTGTGAAGCTCTCTGAGCTAAGTAGAGCAGAGAATGAGGGACTTTCTGATGGGTTGAGTTTGATAGAGGAAGTGAAGAA
GGAGATTGACTCTATCTCGAAGGGAGGTCCTATTTCATATGCAGATATCATTCAATTAGCAGGTAATGTTATAGTATATACCAAAACTTGTTCATGAAGAGTAGCATTATTGTATTTGTG
GATAACTGAAATCTTTCTTGGGTTGGTTTCTGTAGGAGACAATCAGCGGTCAAGTTTACATATTTAGCATCGGCTATCCGAAAATGTGGTGGAAATGAAGAGAAGGGGAACTTACTTTAC
ACAGCATATGGTTCAGCTGGTCAGGTAAACAATGCTATCGTATTCGCTTTTGAGTCGCGGCGTTTTGTTCAAATCGATACTGAACCGTTGTGAATCTGTTAGTGTGGGGATTGTTTGATA
GAAATTTTGGAAGGAGTGATGCAACAGAGGCTGATCCAGAAGGCAGAGTCCCACAATGGGGGAAAGCAACTGTGCAAGAGATGAAAGATAAGTTCATTGCTGTTGGATTGGGTCCTCGTC
AGGTACATGATTTTCGGTTTAAACAGAGAATTATCTACTAGGATCACTCGAAGTAACTAACCTGTATGAGGAATTTGTAGCTCTAGCTGTAATGTCTGCATTCTTGGGTCCTGATCAAGC
TGCAACAGAACAGCTCTTAGCTACTGACCCTCAAGTTGCTCCATGGGTTCAGAAGTATCAAAGAAGCCGTGAAACCGTATCTCAGACTGATTACGAGGTTCGTTTTCACTCGATTTGCCT
TAATCATATATTCATCTACCTCAAACTCAAGCTCATGTTTTGGTTTATGAATATGTTTGTAGGTGTTGATCTCATAACTGCATTCACAAAGCTAAGTTGCTTAGGACAGCAAATCAACTT
CGAGGCATATACATATCCCGTCGAACGGATCAATCTGAGCAAACTCAAGCTATAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGAGGAGTGTCCTTCCTCTCCACTGTTCCTTCCTTCACCAACACAACCAATCATCAACATCTCACTACACTCTCTTCTTCTTCTCATCGCTCTGCTGTTATACGATGTTCCAAGATT
GAACCTCAAGTTTCCGGTGAAAGTTTAGCTTTCCACCGCCGTGATGTTCTCAAACTCGCCGGCACTGCAGTCGGAATGGAATTAATAGGCAACGGTTTCATTAACAATGTGGGTGATGCA
AAAGCTGCTGACTTGAATCAACGTAGACAACGATCCGAGTTTCAATCAAAGATCAAGATTTTGCTTTCAACCACCATTAAGGCTAAACCGGAGCTTGTACCTTCCTTACTCAAACTAGCT
CTCAATGATGCTATGACTTATGATAAGGCTACTAAATCCGGGGGAGCCAATGGATCCATACGGTTCAGCTCTGAGCTAAGTAGAGCAGAGAATGAGGGACTTTCTGATGGGTTGAGTTTG
ATAGAGGAAGTGAAGAAGGAGATTGACTCTATCTCGAAGGGAGGTCCTATTTCATATGCAGATATCATTCAATTAGCAGGACAATCAGCGGTCAAGTTTACATATTTAGCATCGGCTATC
CGAAAATGTGGTGGAAATGAAGAGAAGGGGAACTTACTTTACACAGCATATGGTTCAGCTGGTCAGTGGGGATTGTTTGATAGAAATTTTGGAAGGAGTGATGCAACAGAGGCTGATCCA
GAAGGCAGAGTCCCACAATGGGGGAAAGCAACTGTGCAAGAGATGAAAGATAAGTTCATTGCTGTTGGATTGGGTCCTCGTCAGCTAGCTGTAATGTCTGCATTCTTGGGTCCTGATCAA
GCTGCAACAGAACAGCTCTTAGCTACTGACCCTCAAGTTGCTCCATGGGTTCAGAAGTATCAAAGAAGCCGTGAAACCGTATCTCAGACTGATTACGAGGTTGATCTCATAACTGCATTC
ACAAAGCTAAGTTGCTTAGGACAGCAAATCAACTTCGAGGCATATACATATCCCGTCGAACGGATCAATCTGAGCAAACTCAAGCTATAA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGAGATTTGG ATAACAGAGA ATCCACAAAA GTGTATCCTT CACAAAACCA AAACACACTC TCCATTTTCT TCAGACAACT CTTTCTCCTT TCTTCTCTCT TCTCTGTCTC ATCACAAACC  AGAAATGGGA GGAGTGTCCT TCCTCTCCAC TGTTCCTTCC TTCACCAACA CAACCAATCA TCAACATCTC ACTACACTCT CTTCTTCTTC TCATCGCTCT GCTGTTATAC GATGTTCCAA  GATTGAACCT CAAGTTTCCG GTGAAAGTTT AGCTTTCCAC CGCCGTGATG TTCTCAAACT CGCCGGCACT GCAGTCGGAA TGGAATTAAT AGGCAACGGT TTCATTAACA ATGTGGGTGA  TGCAAAAGCT GCTGACTTGA ATCAACGTAG ACAACGATCC GAGTTTCAAT CAAAGATCAA GATTTTGCTT TCAACCACCA TTAAGGCTAA ACCGGAGCTT GTACCTTCCT TACTCAAACT  AGCTCTCAAT GATGCTATGA CTTATGATAA GGCTACTAAA TCCGGGGGAG CCAATGGATC CATACGGTTC AGCTCTGAGC TAAGTAGAGC AGAGAATGAG GGACTTTCTG ATGGGTTGAG  TTTGATAGAG GAAGTGAAGA AGGAGATTGA CTCTATCTCG AAGGGAGGTC CTATTTCATA TGCAGATATC ATTCAATTAG CAGGACAATC AGCGGTCAAG TTTACATATT TAGCATCGGC  TATCCGAAAA TGTGGTGGAA ATGAAGAGAA GGGGAACTTA CTTTACACAG CATATGGTTC AGCTGGTCAG TGGGGATTGT TTGATAGAAA TTTTGGAAGG AGTGATGCAA CAGAGGCTGA  TCCAGAAGGC AGAGTCCCAC AATGGGGGAA AGCAACTGTG CAAGAGATGA AAGATAAGTT CATTGCTGTT GGATTGGGTC CTCGTCAGCT AGCTGTAATG TCTGCATTCT TGGGTCCTGA  TCAAGCTGCA ACAGAACAGC TCTTAGCTAC TGACCCTCAA GTTGCTCCAT GGGTTCAGAA GTATCAAAGA AGCCGTGAAA CCGTATCTCA GACTGATTAC GAGGTTGATC TCATAACTGC  ATTCACAAAG CTAAGTTGCT TAGGACAGCA AATCAACTTC GAGGCATATA CATATCCCGT CGAACGGATC AATCTGAGCA AACTCAAGCT ATAAGCTATG TACACTATAT GTATAACATG 
AGAGGAAACT TCGAAATAAA CCAAAGATTT TTCTTGACAT TGAAACAAAA AGAGAAGTTG AATCCATTAC AAACAAAGA 

Retrieve as FASTA